LOC113529627


Basic Information

Item Value
gene id LOC113529627
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17481462 ~ 17489363 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918934.2
gacctggtctttttccagtcttcagctgtccagtttcgTCGTAGGAAATGATCCAACAGTTTCTGCGCCCGTTGCTGTGGGTCCGTCCGCTTCGCTGCATGCTGGATGAAAGGCTCGACGTGCGCGTGCGCGGTTTACTGCCCGGGGTTCGAGTCACGCTGCACGCGCTGCTTCACACAGAGGATGGAGATTTTTGGGAAGGTTTTGGTCACTATATTAGCGATGATTTAGGAACTGTCACAGTATGTAAAGATGCCAGTCTTGGTGGATCATATGACGGAGTTAAACCCATGGGTCTGCTGTGGAGTATGAAACCCATTCCTGGAAGTAGGACAGGCCTCAGATTGAGGAAGAAGGATGTCCAGGCACAGTCTGATGTGCACATATCTGTGTACAAAGACCACTTAACACACGGCTTCCAGGAGAAAGCTCCTATAGCATCAGTTGTGGCACAGCGGTGGTACATGGCCCCTGGAGTTCAGAGAGTTGATGTTACGGACAAAGGATTAAAGGGGACTCTTTTTATCCCACCAGGTCCTGGTCCTTTTCCTGCTGTGCTGGACCTCTGGGGTGGAGGAGGGGGTCTAGTCGAGTATCGCTCTGCTCTACTAGCATCCAGAGGCTACGTCTCATTATCTTTAGAGTATAGTGCTGAAACGGATGCTGGTGGAAAGCCGCGGCATGTGGAGATTGACTATTTTGAGGCAGCCATCACTGTGCTGAGGCAGCATCCACAGGTGTCCCCTGAAAGACTCGCCATTGTGGGTTTGTCATATGGTGCTTTTTTGACCATGTACATGGCGGCGTATTCTTCAGTGATAAAGCCCAggtgtatagtgtgtattagTGGAAGCCATGCTATACCTGTCAGTGGATCACTGGTTGATATCTCAGGACTGGTCAAAAGATTGACCAAGAAACCCCACTATGATAAGGAACAGAGACAAATTTGGCGAGCTCCTCTGCTACCAATACCAGATGACCCTTTGAACAAAGTTGAAGTAGATCGTATCAAATGTCCCATTTTACTGATTGTTGGGGAAGATGATCAAAATTGCCCAGCATCAGAGTCAGCAGATGATATGAAGCAGATGATGGAGCGAGCTGGTAATAGTCACCTGTTGACCGTTTTAACCTACCCTGGAGCCGGCCACCTCATCGAGCCTCCTTACACTCCACATTGCCAAGCCAGCAACTTCATGTTGGCAGAGACAAGGACTAAAGTGATGGTGCTGTGGGGTGGACAGACGGAGGCTCACAGTCAAGCTCAGGAAGATTCCTGGCACAAAATCCTGGCCTTTTTGGAGCAGCACCTCTACAGCAACACAAGTGATTAAAACCaatgtgaaaacatttatttccagaATGTGGCTCACTGGTGAAAAGGGAGCTCAAGAGTCTTCTCCAGATTTCTTATCATTTCATATTATGTTGTGCCTTATATCAGCTATTGAAGAACAATAATCAGATCATAAATCTGTGgttaaaatttcatttaaaaatggaagGTAATGTATGTAACTTATGACTAAGCGGAGGACCACCAGGTCTGTATCCTTCCCTAAGACTAGTGACCTAGTGACCACTACTACCTTATGACCGTGACGCCATGCTGGTACCCTATAAATGGTGCCTGTGACATCAAGTTCGTCCCGTGGCTGTTCTTATCAACGCAAGTCACCAACATGTATCAGCAGTCCTCCAGTCATACATCCACGGTTACATACTTAACATTCCATTGCACTTCCAGACTTGCGTTCCAGACTGCCAAAGTCATCAAAAGGGTTCATAAAATGTCCTGACAATGACAGACTGAATTAGTCAAAGTTCTGATACTGTTCTCCACCAAGGAATTGCTATTTATCAGCTTGACTAAAATTTCAGGAAGATAAAACGTATCTAAAAGTGCaatctttataaatgttatataataaaagATTTGTATGCATGTTTATGTGTACACATTAGTCcacataattaataaatgaataattaatgta
>XM_026918935.2
GTTGTCCAGGAATACCATTATCCCCTTTAGACCATGCAGCGTCTCTGTCATCATTCAGTGAAAGAGTTCTGGAGTGCTAGTTATGGTGAATGGTAGACTTCTGAAACAGTATCTGGCCAATAAAGGTGGTGAGCTTACTCTCAGGGTGGATAGGGTATCTGCCAGAAACCGTGTGCAGCCTCCAGTGAAGAGAATACAGTGGCACAGCTTAGGAATTATCTTCTCCAGGTCGTAGGAAATGATCCAACAGTTTCTGCGCCCGTTGCTGTGGGTCCGTCCGCTTCGCTGCATGCTGGATGAAAGGCTCGACGTGCGCGTGCGCGGTTTACTGCCCGGGGTTCGAGTCACGCTGCACGCGCTGCTTCACACAGAGGATGGAGATTTTTGGGAAGGTTTTGGTCACTATATTAGCGATGATTTAGGAACTGTCACAGTATGTAAAGATGCCAGTCTTGGTGGATCATATGACGGAGTTAAACCCATGGGTCTGCTGTGGAGTATGAAACCCATTCCTGGAAGTAGGACAGGCCTCAGATTGAGGAAGAAGGATGTCCAGGCACAGTCTGATGTGCACATATCTGTGTACAAAGACCACTTAACACACGGCTTCCAGGAGAAAGCTCCTATAGCATCAGTTGTGGCACAGCGGTGGTACATGGCCCCTGGAGTTCAGAGAGTTGATGTTACGGACAAAGGATTAAAGGGGACTCTTTTTATCCCACCAGGTCCTGGTCCTTTTCCTGCTGTGCTGGACCTCTGGGGTGGAGGAGGGGGTCTAGTCGAGTATCGCTCTGCTCTACTAGCATCCAGAGGCTACGTCTCATTATCTTTAGAGTATAGTGCTGAAACGGATGCTGGTGGAAAGCCGCGGCATGTGGAGATTGACTATTTTGAGGCAGCCATCACTGTGCTGAGGCAGCATCCACAGGTGTCCCCTGAAAGACTCGCCATTGTGGGTTTGTCATATGGTGCTTTTTTGACCATGTACATGGCGGCGTATTCTTCAGTGATAAAGCCCAggtgtatagtgtgtattagTGGAAGCCATGCTATACCTGTCAGTGGATCACTGGTTGATATCTCAGGACTGGTCAAAAGATTGACCAAGAAACCCCACTATGATAAGGAACAGAGACAAATTTGGCGAGCTCCTCTGCTACCAATACCAGATGACCCTTTGAACAAAGTTGAAGTAGATCGTATCAAATGTCCCATTTTACTGATTGTTGGGGAAGATGATCAAAATTGCCCAGCATCAGAGTCAGCAGATGATATGAAGCAGATGATGGAGCGAGCTGGTAATAGTCACCTGTTGACCGTTTTAACCTACCCTGGAGCCGGCCACCTCATCGAGCCTCCTTACACTCCACATTGCCAAGCCAGCAACTTCATGTTGGCAGAGACAAGGACTAAAGTGATGGTGCTGTGGGGTGGACAGACGGAGGCTCACAGTCAAGCTCAGGAAGATTCCTGGCACAAAATCCTGGCCTTTTTGGAGCAGCACCTCTACAGCAACACAAGTGATTAAAACCaatgtgaaaacatttatttccagaATGTGGCTCACTGGTGAAAAGGGAGCTCAAGAGTCTTCTCCAGATTTCTTATCATTTCATATTATGTTGTGCCTTATATCAGCTATTGAAGAACAATAATCAGATCATAAATCTGTGgttaaaatttcatttaaaaatggaagGTAATGTATGTAACTTATGACTAAGCGGAGGACCACCAGGTCTGTATCCTTCCCTAAGACTAGTGACCTAGTGACCACTACTACCTTATGACCGTGACGCCATGCTGGTACCCTATAAATGGTGCCTGTGACATCAAGTTCGTCCCGTGGCTGTTCTTATCAACGCAAGTCACCAACATGTATCAGCAGTCCTCCAGTCATACATCCACGGTTACATACTTAACATTCCATTGCACTTCCAGACTTGCGTTCCAGACTGCCAAAGTCATCAAAAGGGTTCATAAAATGTCCTGACAATGACAGACTGAATTAGTCAAAGTTCTGATACTGTTCTCCACCAAGGAATTGCTATTTATCAGCTTGACTAAAATTTCAGGAAGATAAAACGTATCTAAAAGTGCaatctttataaatgttatataataaaagATTTGTATGCATGTTTATGTGTACACATTAGTCcacataattaataaatgaataattaatgta

Function

GO: NA

KEGG:

id description
K06889 K06889; uncharacterized protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918934.2 False 2000 mRNA 0.45 11 17481462 17489363
XM_026918935.2 True 2191 mRNA 0.45 11 17482141 17489363

Neighbor

gene id symbol gene type direction distance location
LOC113529594 LOC108275015 coding upstream 7549 17468920 ~ 17473913 (+)
scamp5a scamp5,LOC103363822,LOC107395508,LOC108436905,LOC102221013,LOC103466429 coding upstream 13936 17459490 ~ 17467526 (+)
si:ch73-330k17.3 LOC108275018,LOC108436903,LOC107688943 coding upstream 33805 17445361 ~ 17447657 (+)
eif3ja eif3j,LOC108275014,LOC107688938,LOC107739069 coding upstream 37788 17437234 ~ 17443674 (+)
duox2 duoxa1 coding upstream 57997 17420208 ~ 17423465 (+)
ubl7a ubl7a,ubl7,LOC108274434,LOC108436908,LOC107703185 coding downstream 1472 17490835 ~ 17496461 (+)
LOC113529626 LOC108275292,LOC108436907 coding downstream 9954 17499317 ~ 17504896 (+)
lamb4 lamb4 coding downstream 18497 17507860 ~ 17525781 (+)
lamb1a lamb1,lamb1a,LOC107662456,LOC107595246 coding downstream 38878 17528241 ~ 17551524 (+)
si:dkey-42p14.3 LOC108274539 coding downstream 72824 17562187 ~ 17564164 (+)
G150268 NA non-coding upstream 24327 17456920 ~ 17457135 (+)
G150265 NA non-coding upstream 35002 17446249 ~ 17446460 (+)
G150261 LOC108275011 non-coding upstream 47085 17430143 ~ 17434377 (+)
G150152 sqrdl non-coding upstream 226125 17253667 ~ 17255337 (+)
G150148 NA non-coding upstream 244516 17236641 ~ 17236946 (+)
G150407 NA non-coding downstream 213191 17702554 ~ 17702758 (+)
G150590 LOC108274445 non-coding downstream 343403 17832766 ~ 17840449 (+)
G150592 NA non-coding downstream 422274 17911637 ~ 17912583 (+)
G150609 NA non-coding downstream 425262 17914625 ~ 17915242 (+)
LOC117598020 NA non-coding downstream 641483 18130846 ~ 18139145 (+)
LOC113529564 ano9,LOC108442698 other upstream 1658871 15807990 ~ 15822591 (+)
svip svip other upstream 1756371 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 1828778 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 3652131 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 3704591 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 344874 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 693191 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 1185647 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 1232232 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 1258464 18747827 ~ 18796259 (+)

Expression


Co-expression Network