ubl7a (ubl7a,ubl7,LOC108274434,LOC108436908,LOC107703185)


Basic Information

Item Value
gene id ubl7a
gene name ubl7a,ubl7,LOC108274434,LOC108436908,LOC107703185
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17490835 ~ 17496461 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918936.2
TACAACAGAGATGGCGCGTTTAAAGCCATTTTGACTACAAATCCCATAAGCACCATAACGTTCAGTGCTTACGTCATTCCGCACAAAACAAGAATGAAAACAAGGATGATTTTGCAGAGTGTACAAGTTCATGACTGTAACAGAGTGACTAGATATATTTTATAAGAATTTAAAAGAatacgtctttttttttttttagaattgttgtttatttttgtgtcttaAACCCGCTTTCCGGCGTCACTCATTAAGAATTAAATATTAGTCAGAGTATCTTGCTCTAATTCCTGTTGGTGCTGGGGTGATATATTACTCACGGGTTTGCCTCTGGCACCGGAAATATGGCGGTTTCCGAGTGGCGTTTGTCGCTGAAGTTAATGGACCAGCCCTCGGTTCCGAAGTCGGTGCTGCAGTTTCCTGAGGCAGAGCCTGGTGATGTCCCACCGGGCCAGTACCGCGTTGCGACTCTCAAGCAGCTCGTTTCAGTGCAGTTACCGGACGCCATTCCAGACCCTGAGCTTATAGAGCTGGTGTACTGTGGCAGGAAGCTGAGGGATGAACTCACTTTAGATTCTTATGGGATCCAGTCAGGATCAACAGTACACATCCTGAGAAAGTCATGGCCAGAACCTGAGATCCACCCAGAGCCAGTGGACAGGGTGACAGCCGCAAGAGAATTTCGTGTCCTGCAGGCAGCTCTTCACACCAGCACAGCCTACAGAGACTCAGTTTTTAAGATGCTGAACAACAAGGAGTCTTTGGATCAAATCATTGTGGCGACACCTGGCTTGAGTAGTGATGCAGTGGCCCTAGGTGTGCTTCAAGACAAGGACCTCTTTGTGCAATTCACAGATCCAAACATGCTTGAcatGTTGATTAGCTCTCACCCAGCATTGGTTAATGCCATTATTCTGGTGTTGCATTCTGTAGCTGGCAGTGTTCCCACCCAGCAGAGTGCCAGCTCCTCTAGAAATGTATCCTCCAGCTCCTACAGTGAAATGCCAGGTGGTTTTCTCTTCGAAGGCATGTCGGATGATGAGGAAGAATTCCAGTCTGGGAATCGCAGTGGCCCATCTTCGAGTTCTGCAGGTTCTTCGGGCCTGAGGCCTGCTACATTAGGTTACAGTGGAGCAGTAGGGCCCAGGCCAATCACACAGAGTGAACTCGCTACAGCTCTGGCCCTAGCCAGCACTCCAGAAAGCAGTGCTGTTACTCCTACCATAGGAAACCAGGGAGCTTCTTCAGGGGTTTCCCCTATCCCTGCAGGAACTCCGATAACAAATGACCTTTTTAACCAAGCCCTGCAGCAAGCCTTACAGGTGTCTAGCATATCGTCTCTGCAAagtCAGTGGCAATCTCAGCTCCAGCAACTGCGCGATATGGGAATCCAGGATGAGGAGCTGATTCTGCGAGCCCTACAGGCCACTGGAGGAGACATCCAAGCTGCCCTAGAGCTCATTTTTGCTGGGGGAGCTCCATGAAATGCTGCACACTCAAAGAATGTACTCTGTAATATTTGTGCAGTTATAACTGTACAAATtattcttaaatattttaaatagaaaagcTGTTCACACTTTTTTCCTGACATGCCaacatacatattttatttattttaattccacTAATTATGTGAATATACAGCTCCCTCCAGAATTAGCAGCACCCTGGCTCCCGAGTGGTGTGACAGAAAAGCGTTCTATTTGTTGTTTGGAGATTGCGAGTTCGATTCCCGATAATGCCACAGCCACCCATGGCTGGGAGTCCTAAAGCTGTGcgctctgggtgggaggggtggcacactgtcaatcacagaaacaccagccaatcatggttgtctgtgagctcatgcatgcggaagagggcagatagcactttcctcagtgtgtgttatgCGGTCCTGTGATGCAgcgtgagcagcagtttgaaaaggctggcttcacgtgtctgaGAGGaggcatgtgttagccttcaccctccttgACTGGAAGCACAAAAAACATTGAACTTTTTTGTATGAAAATATTGAGTTTAAAATTATTGGTAAAATTATAGTATTAGTATCAGTACTATGGGTGGGGACCATTTTGATACCTAACCTCTCTTCCTGTCTAATAACACTTTGTTTGTTCCTACAGAGCTATAGAGATCTTGGTCTAATCTTCTATgcagaacatttaaaaacatcacAGGTTTTAAGTTGGGTTAAaatctggagactgagatggtcattgcaaaacattttgtgttttttaaccatttctggGTTGATATAGAAGTATGTTTGTTGAAAGGTTTATCAGTGAAAAGGCCTGAACCTCCTGGAGAGGCAGCCAGGTTTTGGGCAGAAATATCTTGGTGTTTAGAAGAATTCAAAATGCTATCAGTCTTCACAAGAGCCCCTGGACCACCATGTTGTGAGATGATCTAAGGAGGGGCTTCTTTCTTGCAATGCTTCCAGTTTTTTGTTGTGAAAGTGACGTGATGCTTAATGGTTGATTTTGAAAGAGAATCAACTAAACTGTAAGAATCGATTCTAAAACTCTGATGCAACAGGGAACATGTTCCTGGGGACctgtact

Function

symbol description
ubl7a Predicted to enable polyubiquitin modification-dependent protein binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol. Orthologous to human UBL7 (ubiquitin like 7).
ubl7 Predicted to enable polyubiquitin modification-dependent protein binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol.

NR:

description
PREDICTED: ubiquitin-like protein 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918936.2 True 2582 mRNA 0.45 10 17490835 17496461

Neighbor

gene id symbol gene type direction distance location
LOC113529627 NA coding upstream 1472 17481462 ~ 17489363 (+)
LOC113529594 LOC108275015 coding upstream 16922 17468920 ~ 17473913 (+)
scamp5a scamp5,LOC103363822,LOC107395508,LOC108436905,LOC102221013,LOC103466429 coding upstream 23309 17459490 ~ 17467526 (+)
si:ch73-330k17.3 LOC108275018,LOC108436903,LOC107688943 coding upstream 43178 17445361 ~ 17447657 (+)
eif3ja eif3j,LOC108275014,LOC107688938,LOC107739069 coding upstream 47161 17437234 ~ 17443674 (+)
LOC113529626 LOC108275292,LOC108436907 coding downstream 2856 17499317 ~ 17504896 (+)
lamb4 lamb4 coding downstream 11399 17507860 ~ 17525781 (+)
lamb1a lamb1,lamb1a,LOC107662456,LOC107595246 coding downstream 31780 17528241 ~ 17551524 (+)
si:dkey-42p14.3 LOC108274539 coding downstream 65726 17562187 ~ 17564164 (+)
znf800a znf800 coding downstream 80247 17576708 ~ 17594730 (+)
G150268 NA non-coding upstream 33700 17456920 ~ 17457135 (+)
G150265 NA non-coding upstream 44375 17446249 ~ 17446460 (+)
G150261 LOC108275011 non-coding upstream 56458 17430143 ~ 17434377 (+)
G150152 sqrdl non-coding upstream 235498 17253667 ~ 17255337 (+)
G150148 NA non-coding upstream 253889 17236641 ~ 17236946 (+)
G150407 NA non-coding downstream 206093 17702554 ~ 17702758 (+)
G150590 LOC108274445 non-coding downstream 336305 17832766 ~ 17840449 (+)
G150592 NA non-coding downstream 415176 17911637 ~ 17912583 (+)
G150609 NA non-coding downstream 418164 17914625 ~ 17915242 (+)
LOC117598020 NA non-coding downstream 634385 18130846 ~ 18139145 (+)
LOC113529564 ano9,LOC108442698 other upstream 1668244 15807990 ~ 15822591 (+)
svip svip other upstream 1765744 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 1838151 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 3661504 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 3713964 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 337776 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 686093 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 1178549 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 1225134 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 1251366 18747827 ~ 18796259 (+)

Expression


Co-expression Network