ldlrad3 (ldlrad3,LOC107570178)


Basic Information

Item Value
gene id ldlrad3
gene name ldlrad3,LOC107570178
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 14911227 ~ 14994873 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919007.2
CTCCCACTCCCGGTTCCACCCCGCCCCCTGTCTCCGGCCCTGCTCGCGCGGCTGGCCCTCTGAGAGAGCCCCCTCCTGCCCGCTAAACTAAACTTACccttcaggggaaaaaaacgaaGGACCTGCACTACCCGCGAATATCCGAGACACTGCTGGAAACCGAGGAACTTTTAAAAATCACCCCGAAGTGACTGGGCCGCGGCGGGGTGAAGCAAGGGCCGGCCGAAACAGAAAGTAGGATGTGGGTCTGGTACCTCCTGCTCGGGTCGGGAACGGGCAGCAGCTCGGTCGAGAGCCAGCTTCTCCCTGGGAATAACTTCACCACTGAATGTAACATCCCAGGAAATTTCATGTGTGGCGATGGCTTGTGTATCCCTGGAAGCTGGCAGTGTGATGGTTTCCCCGACTGCTTCGACAAGAGCGACGAGAAGGGTTGCCCGAAGGTGAAGTCTAAGTGCGCCCCCACGTTCTTCGGCTGCGCTAATGGCGTCCACTGCATCATCGGCCGCTTCCGCTGCAACGGCTTCCGTGACTGCCCCGACGGCAGCGACGAGGACAACTGCACAGGTAATCCTCTGGTGTGCTCAGCAGCTCGGTTTCACTGCAGGAACGGCCGATGTGTGGATCGAAGTTTCCTCTGTAATGGCCAAGACAACTGCCAGGACAACAGTGATGAAGAGAACTGCCTTTCTACAGCAGAATCTCCAGGTCAGGATTTTGTGACGTTGGACTACCGGTTGCGTTACTACCCCAGCATCACCTACGCCGTCATAGGCAGCGCCATCATCTTCGTCCTGGTGGTGGCGCTGTTGGCTCTGGTGCTGCATCACCAGAGGAAGAGAAGTGTGTTATTGCCCCGTAGTGGAAGCCACCCGCACCCTCACCAGCCACTGCTGCTCTCCCGGCTGGTAATAGTGGACAGAGGACATGTCTCACCTCCATCCTCCTCTCCATCAGCACATTTCAGCTCAGCACACAGCCTCCAGCTGCTCACCAGCTCGCTCTACCCCCAAGGAGCCCCGCTGGAGTCGCCACCCTCATACTCACAGGCAGTGCTGGACGTCAGTCGACCACCATGGTTTGACCTCCCACCTCCTCCATACCTTCCTGATGGTGATGCTGCGTGTGAAACAGAGCCACCTGTTTATGAAGCATCCACACAAGCTAGTCAGACTCCTGCAGTCAGATCTGAGCGAGCACAAGTACACAGCATCAATCCCACAGTCAGATGTGACGCAGCACAGCCTCGAACCCTCAGTTCAGCTTCCAGCTCCACAGGGGAGTCTCAGCAGCTATAGCTGTCCAGTGAGAGGACACAGAGACACTTGTATATAGGACACAGAGACATGTATGGGACTCACTGTGTGGAAAGATTAAAGTCGGAAGAGTGCCACAGCGCTGCATTTGGAGTATCGCTAAAGGACACTGACAGAAATTGGTCTTACTACTCAGAGTGGTTTCCTGAGTGGAAAGTGCCATCTTCTGGTACAAATGTGACATTACAGCTCATGACTTTGCTACGGTGAAAAGACACTGTACAGAGAAATCTACTTCACACCTCTGAGACCTGAGACTCAGAGACTGGTCTCTAATACAAGACTGATTTAGACATTGCATTAAAGATGCAGGCACCAAATGAATAGCACTCAAGTACTACAGGACTAAAACTGTTCTGAGCTGTTCTTTGTCACTAGTTATTTCTTTCGGTGTTTCCTTTTCATCCAGAGCTTTATAATATTCTGATAAATCACTATGCAGTGTGAATTGTTGAacttgtttaaacaaaaaaaaaacatgatacaaGTGATATGGTGTGTAAAGAATCAAAGTCCTACCCCATTCTCATCATTAAGGCACTTACTAATGTATCCCGTTGAAACACTTCTGGTCATCATGTTCCCTTCAATGATTTCTCAAATTAAAGTCACAATAAACTCTAAATAGACCACCTTAAGCTGCGTTCACGCTATAATACACTTTTCTCCACAGTAAAAGTGCTGGATGGTGTTCTGACAAATTGTCCTTACCTGTTGAAATGTCCATGGGTTTTGCACACCCATTAATTCATGCTTCTTCAAGTAGATTTCTCCTGGAGGAATTTTCTGAGAAAGTTACAGTAATAAAGTAGACGAAATAGCTCAAAATACATGTAACCATGACGACAGTGATACTGCTTGTGGTGTTCTATGTATTTTTCCTGCATTTTGCAGCGATTCTACTGGCCAGTATGAGTGATGTATTATTCCAAATCAGCACTAGTTAGTGTCATGGTTCAATAACCATAAATATCTCTTGATAAAACCTAAAAACACAATGAACTTAATCTTGCTTAAATGGTTACGCCACCAATTCTGCCTTCTGATTGCACCAGCTTAAGTAGTTAGCTTATCTATCTCGATTTATTAACAGCAATGATTAGATTGTTCTCTTAATATTCATTCTAACTAGAAGGCTTTGTGTTCTGTGTTGAAATCGCCCTTATATTCGCTcactaaaaaaaactaatttctcAGCA
>XM_026919008.2
CCTCCCACTCCCGGTTCCACCCCGCCCCCTGTCTCCGGCCCTGCTCGCGCGGCTGGCCCTCTGAGAGAGCCCCCTCCTGCCCGCTAAACTAAACTTACccttcaggggaaaaaaacgaaGGACCTGCACTACCCGCGAATATCCGAGACACTGCTGGAAACCGAGGAACTTTTAAAAATCACCCCGAAGTGACTGGGCCGCGGCGGGGTGAAGCAAGGGCCGGCCGAAACAGAAAGTAGGATGTGGGTCTGGTACCTCCTGCTCGGGTCGGGAACGGGCAGCAGCTCGGTCGAGAGCCAGCTTCTCCCTGGGAATAACTTCACCACTGAATGTAACATCCCAGGAAATTTCATGTGTGGCGATGGCTTGTGTATCCCTGGAAGCTGGCAGTGTGATGGTTTCCCCGACTGCTTCGACAAGAGCGACGAGAAGGGTTGCCCGAAGGTGAAGTCTAAGTGCGCCCCCACGTTCTTCGGCTGCGCTAATGGCGTCCACTGCATCATCGGCCGCTTCCGCTGCAACGGCTTCCGTGACTGCCCCGACGGCAGCGACGAGGACAACTGCAGTAATCCTCTGGTGTGCTCAGCAGCTCGGTTTCACTGCAGGAACGGCCGATGTGTGGATCGAAGTTTCCTCTGTAATGGCCAAGACAACTGCCAGGACAACAGTGATGAAGAGAACTGCCTTTCTACAGCAGAATCTCCAGGTCAGGATTTTGTGACGTTGGACTACCGGTTGCGTTACTACCCCAGCATCACCTACGCCGTCATAGGCAGCGCCATCATCTTCGTCCTGGTGGTGGCGCTGTTGGCTCTGGTGCTGCATCACCAGAGGAAGAGAAGTGTGTTATTGCCCCGTAGTGGAAGCCACCCGCACCCTCACCAGCCACTGCTGCTCTCCCGGCTGGTAATAGTGGACAGAGGACATGTCTCACCTCCATCCTCCTCTCCATCAGCACATTTCAGCTCAGCACACAGCCTCCAGCTGCTCACCAGCTCGCTCTACCCCCAAGGAGCCCCGCTGGAGTCGCCACCCTCATACTCACAGGCAGTGCTGGACGTCAGTCGACCACCATGGTTTGACCTCCCACCTCCTCCATACCTTCCTGATGGTGATGCTGCGTGTGAAACAGAGCCACCTGTTTATGAAGCATCCACACAAGCTAGTCAGACTCCTGCAGTCAGATCTGAGCGAGCACAAGTACACAGCATCAATCCCACAGTCAGATGTGACGCAGCACAGCCTCGAACCCTCAGTTCAGCTTCCAGCTCCACAGGGGAGTCTCAGCAGCTATAGCTGTCCAGTGAGAGGACACAGAGACACTTGTATATAGGACACAGAGACATGTATGGGACTCACTGTGTGGAAAGATTAAAGTCGGAAGAGTGCCACAGCGCTGCATTTGGAGTATCGCTAAAGGACACTGACAGAAATTGGTCTTACTACTCAGAGTGGTTTCCTGAGTGGAAAGTGCCATCTTCTGGTACAAATGTGACATTACAGCTCATGACTTTGCTACGGTGAAAAGACACTGTACAGAGAAATCTACTTCACACCTCTGAGACCTGAGACTCAGAGACTGGTCTCTAATACAAGACTGATTTAGACATTGCATTAAAGATGCAGGCACCAAATGAATAGCACTCAAGTACTACAGGACTAAAACTGTTCTGAGCTGTTCTTTGTCACTAGTTATTTCTTTCGGTGTTTCCTTTTCATCCAGAGCTTTATAATATTCTGATAAATCACTATGCAGTGTGAATTGTTGAacttgtttaaacaaaaaaaaaacatgatacaaGTGATATGGTGTGTAAAGAATCAAAGTCCTACCCCATTCTCATCATTAAGGCACTTACTAATGTATCCCGTTGAAACACTTCTGGTCATCATGTTCCCTTCAATGATTTCTCAAATTAAAGTCACAATAAACTCTAAATAGACCACCTTAAGCTGCGTTCACGCTATAATACACTTTTCTCCACAGTAAAAGTGCTGGATGGTGTTCTGACAAATTGTCCTTACCTGTTGAAATGTCCATGGGTTTTGCACACCCATTAATTCATGCTTCTTCAAGTAGATTTCTCCTGGAGGAATTTTCTGAGAAAGTTACAGTAATAAAGTAGACGAAATAGCTCAAAATACATGTAACCATGACGACAGTGATACTGCTTGTGGTGTTCTATGTATTTTTCCTGCATTTTGCAGCGATTCTACTGGCCAGTATGAGTGATGTATTATTCCAAATCAGCACTAGTTAGTGTCATGGTTCAATAACCATAAATATCTCTTGATAAAACCTAAAAACACAATGAACTTAATCTTGCTTAAATGGTTACGCCACCAATTCTGCCTTCTGATTGCACCAGCTTAAGTAGTTAGCTTATCTATCTCGATTTATTAACAGCAATGATTAGATTGTTCTCTTAATATTCATTCTAACTAGAAGGCTTTGTGTTCTGTGTTGAAATCGCCCTTATATTCGCTcactaaaaaaaactaatttctcAGCA

Function

symbol description
ldlrad3 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human LDLRAD3 (low density lipoprotein receptor class A domain containing 3).

NR:

description
low-density lipoprotein receptor class A domain-containing protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919007.2 True 2515 mRNA 0.48 6 14911228 14994873
XM_026919008.2 False 2513 mRNA 0.48 6 14911227 14994873

Neighbor

gene id symbol gene type direction distance location
trim44 trim44,LOC107716865,LOC107719839 coding upstream 24260 14838032 ~ 14886967 (+)
fjx1 fjx1 coding upstream 98521 14809908 ~ 14812706 (+)
cd44b NA coding upstream 201793 14693632 ~ 14709434 (+)
pdhx pdhx coding upstream 228910 14639460 ~ 14682317 (+)
ehf ehf coding upstream 280788 14623295 ~ 14630439 (+)
LOC113530018 rccd1 coding downstream 94402 15089275 ~ 15096339 (+)
metap2b metap2,LOC108275287,LOC108428789,LOC107732295,LOC107701059,LOC107676466,LOC107754321,LOC107569354 coding downstream 108051 15102924 ~ 15111187 (+)
tmpob LOC108275086 coding downstream 132494 15127367 ~ 15132498 (+)
slc25a3b slc25a3,slc25a3b,LOC107551415,LOC107732290 coding downstream 138049 15132922 ~ 15138489 (+)
ldhbb ldhbb,LOC108275055,LOC108428782,LOC103028647,LOC105895664,LOC107659842 coding downstream 145224 15140097 ~ 15145417 (+)
G148654 NA non-coding upstream 23024 14887534 ~ 14888203 (+)
G148645 NA non-coding upstream 106773 14804141 ~ 14804454 (+)
G148551 NA non-coding upstream 172877 14723351 ~ 14738350 (+)
G148521 NA non-coding upstream 408345 14502622 ~ 14502882 (+)
G148459 NA non-coding upstream 610991 14300017 ~ 14300236 (+)
G148787 NA non-coding downstream 48260 15043133 ~ 15043881 (+)
G148862 NA non-coding downstream 107605 15102478 ~ 15102695 (+)
G148866 NA non-coding downstream 141617 15136490 ~ 15137999 (+)
LOC113530229 NA non-coding downstream 141628 15136501 ~ 15136728 (+)
LOC113530230 NA non-coding downstream 142869 15137742 ~ 15137952 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 1081896 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 1134356 13761334 ~ 13776871 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other upstream 1522031 13372872 ~ 13389196 (+)
zgc:172145 LOC108275003 other upstream 1557965 13349323 ~ 13353262 (+)
G147542 NA other upstream 1993973 12916919 ~ 12917254 (+)
slc5a12 slc5a12 other downstream 568433 15563306 ~ 15652684 (+)
svip svip other downstream 726405 15721278 ~ 15725091 (+)
LOC113529564 ano9,LOC108442698 other downstream 813117 15807990 ~ 15822591 (+)
G150589 LOC108274445 other downstream 2839364 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 3187681 18182554 ~ 18184033 (+)

Expression


Co-expression Network