klf13 (znf467,klf13,znf746,LOC108274922,LOC107598847,LOC107550220)


Basic Information

Item Value
gene id klf13
gene name znf467,klf13,znf746,LOC108274922,LOC107598847,LOC107550220
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16296593 ~ 16311059 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919054.2
GACACTCGGGGCCACCACGCCCCCAGCGTGGATACCGACAGCTCCAGTCAGCGCAGAGCACAATACTGTCACTTTACGTGGGTATGGACTTTTCAGCCACGATGGGGAGTTTTCATATTCAAGCAACACAAGTTTATCAGCCTCTCTTTGTCTGAACAATAGCTCTAAAGTGAACAAACAGTCAGTGCGGCGCGTTAACGGTTTGTGTCTCCGCGTGCTTTTCTTCAGGATGTCAGGTTTCTTGAAAAGCCGGTAACGACACGAAGTGAGTTTGCTGAATGTTCAGCATCACACAAAAGGGATCGACGACGGAGTTGAGCGATTTAGACAAGTGTCATTTCGCTTCTGAATGTTATAAAGCAACATCGGGGGCATTTTTGTTTTGCGTCTTTAACAAAATGGAACATTTAGCTGCAGAGTGCCTTGTGTCTATGTCCAGCCGCGCAGTCGTTCACGCTCCTAAAGGGAACAGGGAGATCCGACCCGAAACTGCGCCTGCACCCAGGAACGGAGAAGAGGCCAAGGAAGCGCTGGTGAAGGACAACTCTTCTCTCTTTGTCGTGGCGCGGATTCTGGCGGATTTCAATCAGCAGAGCCCTACGAATTTCGCCGAACAGGCAAAAACGAAAGAAGAGAGCATGCCACCAACCCCAACGCGAGAGGATGGGAACTCTGCCACACCTACCGCCGTCCCTGCCGACTCTGCCCTTAAACAAAGAGGCAAGCGATGGAGGGCTCGCGCTGAGCAGGAGTCCCCGcagaaaaagcacaaatgcCACTATTCTGGCTGCGAAAAAGTTTATGGCAAATCATCACATCTCAAAGCTCACCTAAGGACACATACAGGAGAACGGCCCTTTCCGTGCACCTGGCCTGACTGCAGTAAGAAGTTTGCTCGCTCGGACGAGCTGGCACGCCACTACCGCACACACACGGGAGAAAAGAAGTTCGGCTGCCCACTGTGTGACAAGCGCTTTATGCGCAGCGACCACTTGATGAAGCACGCTCGCCGCCACTCCGACTTCCAGCCAGCCATGCTGAAGAGGCAGCAAGGAGGCAGCGGCACGCTGAACACAGCGAGCAGCACACGACCCGGATCGCTGAGCGACTACAGCCGCTCGGATGCCTCCAGCCCCACACTCAGCCCCACACTCAGCCCAGCCAACTCGCCTTAAACCCGCCTGCACTTTTCCGCCCTCTGCCCCCTGCAgctcagtgctgttttttttaaactcaaattCTTTTCTGTCAAAAGTAGTGATGTTGCACACTTGTTAGCCGCCACCTCTCTTTGCTAATCCTTTCGCTTGCTGTGGTGTACTCTACTGTACATAACTGCTTCCTgtagtgcaattttttttctcaccaacttcaaaaaagagaaaagcagaaaacagagaagaaaatgCCTTTTCCAGATGGCAATATTTACCATATGTACCatatgtctgtattttttatagTCTCTGGCCTCAGCCAGTTTCCATTGTATTTTTGTTGCTCTCTTTTGATCAAATCTgttcaaatgaacaaaaatgtagaCAGAATTAACAGgtataaatttgtttttttgttcctctcttttttttttttaatttatgacgGGTTAGGGGGagtggcgcacacacacacctcaggatTCTAGacagttgtttttcttttcttctcctttaaTATTCACACTGACTGCACAATACAAGCATCACTTTACTCTGAAATTCAACAGGGGTTGAATTTTGTGCCCTGCTCAGGGATGGCCTTGTTAGCTTGAAAGAATGAACATGAAGagaaaacatacataaaacagCCTTACACTcaacaaaaaaattgcactcttccttttgtttttttttatttttattggtgTTCACATCAGGTGAAACTAGTACTAGGTTTAACAGTCATAAAAACTCAATATCTGATCTGGCTGTAAGACGTGGTACCCCAGCATAGGGATTGGAATGGAGTGGAAGTCATTGTGTATTGAGACTGGAAGTaactctttttgtttttaacattgc

Function

symbol description
klf13 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human KLF13 (Kruppel like factor 13).
znf746 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and ubiquitin protein ligase binding activity. Involved in negative regulation of transcription by RNA polymerase II; positive regulation of neuron death; and positive regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm.
znf467 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus.

NR:

description
Krueppel-like factor 13, partial

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09208 KLF9S, BTEB; krueppel-like factor 9/13/14/16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919054.2 True 2021 mRNA 0.47 2 16296593 16311059

Neighbor

gene id symbol gene type direction distance location
rab8b rab8b,LOC108433638,LOC107598845,LOC107550224,LOC107752325,LOC107659505 coding upstream 45518 16242248 ~ 16251075 (+)
dnaja dnaja4,LOC107550212,LOC107698158,LOC107752324,LOC107598844,LOC107659503,LOC107715738 coding upstream 61212 16231335 ~ 16235381 (+)
idh3a idh3a,LOC107757767,LOC107659502 coding upstream 76959 16209778 ~ 16219634 (+)
lrrc61 lrrc61,LOC107752319,LOC107598843 coding upstream 90143 16202775 ~ 16206450 (+)
si:ch211-112g6.4 sh2d7 coding upstream 121759 16170244 ~ 16174834 (+)
LOC113529796 LOC108275431,LOC108433634,LOC108274563 coding downstream 89783 16400842 ~ 16421690 (+)
gcnt3 NA coding downstream 111564 16422623 ~ 16424388 (+)
foxb1a foxb1,LOC103353681 coding downstream 187465 16498524 ~ 16500108 (+)
tln2b tln2,LOC108433629,LOC107659514,LOC107703225,LOC107739102 coding downstream 584651 16895710 ~ 17011850 (+)
tpm1 tpm1,LOC106573503,LOC107659515,LOC107739081,LOC107712528,LOC106946143,LOC103141214,LOC107589334 coding downstream 717018 17028077 ~ 17042478 (+)
G149552 NA non-coding upstream 41279 16254684 ~ 16255314 (+)
G149428 NA non-coding upstream 268574 16027607 ~ 16028019 (+)
G149427 NA non-coding upstream 270081 16024844 ~ 16026512 (+)
G149276 NA non-coding upstream 478225 15771838 ~ 15818368 (+)
G149268 NA non-coding upstream 541681 15754665 ~ 15754912 (+)
G149574 NA non-coding downstream 17197 16328256 ~ 16328539 (+)
LOC117597940 NA non-coding downstream 27531 16338590 ~ 16341963 (+)
G149722 NA non-coding downstream 128647 16439706 ~ 16440054 (+)
G149723 NA non-coding downstream 134980 16446039 ~ 16449140 (+)
LOC117597920 NA non-coding downstream 149321 16460380 ~ 16474228 (+)
LOC113529564 ano9,LOC108442698 other upstream 474002 15807990 ~ 15822591 (+)
svip svip other upstream 571502 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 643909 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2467262 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2519722 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1523178 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 1871495 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2363951 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2410536 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2436768 18747827 ~ 18796259 (+)

Expression


Co-expression Network