slc2a13b (slc2a13)


Basic Information

Item Value
gene id slc2a13b
gene name slc2a13
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15567829 ~ 15577214 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919064.2
CCTCTTCTCATTGAGACAATTTAAACATGGCGCCCTCCTGCCTACTCCCTACAAACTGCAAATAATGCTGTTTCTCGTAGGTTATTATAATGTTTGGTTTATAAAGCGTCTAACTTACTGCGGTACATAGTGAGATTAGATAAGAGCGCTGGATATTCTGTGTTATCCCTACAGGCATGGTTATGCAATGATAAAACCTCTACTAGTGCAGGATTCGGACATCAGTGGATAAAAGGCGTGAAACATGGCGTATAGTCTGCCGCATACTTGCATGTTTGAGTGCAGATGTCATTTGTGCgttgtttttataatttatcacaTCTCAGATGTTCTTCCTGCTGTTATATGAGTGCCGTTGTAAAGGATGGTTATGAGCTGCACATCATGGACCAGGTGACGGGCAGCGCGAGGAGAGTGGAGGATGAGCGCAGGCTGATCCGAGCGCGCGCTACTGCCGCTCAGTCTGTGGGAAGCTCCCACAGCCAGGATGGCTCCTCGAGGTTTGTCTACgtcctctccttcttctccgCTCTGGGAGGCTTCCTCTTCGGCTATGACACCGGCGTGGTGTCCGGGGCTATGCTTCTGCTCAAGAAAGAGATGAACCTGAGCGCGTTTTGGCAGGAGTTGTTGGTCTCCAGCACCGTAGGCGCGGCGGCGCTCTCAGCTCTAGCGGGAGGCTGCCTGAACGGGCTGTACGGCCGCCGGAAGTGCATCATGCTGGCCAGCTTCATTTTTACAGTGGGGGGGATCGTTCTGAGCGTGGCACCTAATAAAACGGTTCTTCTTTTCGGCAGGCTTATTGTTGGTCTTGGAATTGGTGTAGCTTCTATGACAGTGCCGGTCTACATAGCTGAAGTGTCTCCTCCTCAGCTGCGAGGTCAGCTGGTcaccataaacacactgtttatCACAGGCGGGCAGTTCATAGCCAGCGTGGTGGATGGAGCCTTCAGCTACATGGGGCACAATGGCTGGAGGTATATGCTGGGTCTGTCAGTAGTCCCTGCTGTGCTACAGTTTTTgggattcttcttcttcttgcctgAGAGTCCTCGCTGGCTCCTGCAGAAAGGCGATACTCAGCAGGCCCGTGAGGTGCTCACACAGATCCGGGCCACAGAGAACGTGAACGAAGAGTATGACGGTATCAAGAGTATTATtgaagaggaggaaaaggaagCAGGAGGGGGACCAGTGCTGTGCCGTATCCTGGCCTGTGCTCCTGCCCGGAGAGCCCTGATTGTGGGATGTGGCCTTCAGATGTTCCAGCAGCTCTCTGGAATTAACACTGTAATGTACTACAGTGCCACAATTTTGCAGATGGCAGGAGTGCGGGATGATAAGACAGCCATCTGGCTTTCTGCTGCTACAGCATTCACCAATTTCCTGTTTACGCTGGTGGGTGTTTGGCTGGTAGAGCGGGTGGGCCGCAGAAAGCTGACTCTGGGCAGCATTGTTGGTACTGgtgtcagtctctctgtcttggCTGTGGGATTCctactttctgctcagaccTCTCCTCCAGTGACCCTTCACCCTAGTGACCCCACTTCTCCTAACTCAACCTGCACACACTATGGATTTTGTGAACAGTGTATGCTGGATCCAAACTGTGGCTTTTGTTACTATGAGAATGGCTCAACCATATCAGGCTCTTCCTGTGAGCCAGTTGATCCAGCCAACACAGAGCAAGCAGCGAGTGgcagGTGCTCCAATGGTACCCAAGAAGACCCAAGTGCATTGTGGGCCTATAACTACTGCCCAACCTCCTATTCCTGGGTAGTATTGCTGGGTCTCATCCTTTATCTGGCCTTCTTTGCTCCAGGGATGGGGCCCATGCCATGGACAGTGAATTCTGAGATTTATCCGCTGTGGGCTCGGAGCACAGGCAATGCTTGCTCTGCTGGCGTGAACTGGATCTTCAATGTCCTTGTGTCTCTGACATTCCTCCATGTGGCTGAGTACCTCACATACTATGGTGCGTTTTTCCTCTACACTGGCCTGGCTGTGCTTGGATTCCTCTTCTTGCTGGGCTGTCTGCCAGAGACCAAGGGTCTCATGTTGGAGGACATAGAGACTCTGTTTAGCAGAAGGCTCTGCACCTGTGGCGCACTGGGTGGcgaacacacacattacatcagGCCTCATTTGGATTTGGGAAAGTTGCATTATGGGACACTGGAACCAGAGGAAGGAATTGCTTACATATCACTGCAATAATGGTGAAGTTATACCTGGATTTGCCTTTCAGGAGCAATGAACAGCACATATGAGATCATGATCAATGaactgacactttttttttttttaaagatacttATATACACGTACTAACAAAGAGTCAGAATGGGTCTTGGTGTAATCTAGTTGAAACTAGAAGCTCTGTCACTGCATTTAACATGAACAAATCTAtggttttggggaaaaaatcatgCTCTACAAGTGTTTACAAGTCTGACAATcatatattaatgattatattgaGTTGGAGAGAAAACAACTTGATCCTTTAAGGAAtggtatatattttattatgttgaTTATTATGTTTCATTATGTTAGATTAACAGTTTCCAAAATAGACAAAGAACAATGTGAGCCCCCTTTAAATTTAATGGACAAACCCCGAAATTCTCCACattttggaaattaaatgtacatatgACGTAAgtgcatattttatatacatagtacatactgtatatttttgaaAGTATACACAATGATCTGACCACAGATCTCCTGCAGTATCTTTGCTGACCGCTAGGGTCCATGAACCCCATGTTGGAAACCCAGGTGTTGGACATAGCTcagcaacagcaaaaacaaaattccaGTCTACTGTATAGGCTGTCTCTTACATTATTCCATTAATGTAACTATTTTGTTTAGACAAAACTGTGTTCCTCTTTTTCTATTGAATAAAATTTGTCAGAATTAA
>XM_026919065.2
ACCACAGACAGGCGTGACTTGCGGCAGTGGGAGTCACATGACCGCTGCTGTAACTTTAAAACAGGAAGTTTCACGCGCCGAGCCGGGGCTCACTGAGCAGACTAAAAGTAAGACAGCGACGGTTTCATTTACAGGATGGTTATGAGCTGCACATCATGGACCAGGTGACGGGCAGCGCGAGGAGAGTGGAGGATGAGCGCAGGCTGATCCGAGCGCGCGCTACTGCCGCTCAGTCTGTGGGAAGCTCCCACAGCCAGGATGGCTCCTCGAGGTTTGTCTACgtcctctccttcttctccgCTCTGGGAGGCTTCCTCTTCGGCTATGACACCGGCGTGGTGTCCGGGGCTATGCTTCTGCTCAAGAAAGAGATGAACCTGAGCGCGTTTTGGCAGGAGTTGTTGGTCTCCAGCACCGTAGGCGCGGCGGCGCTCTCAGCTCTAGCGGGAGGCTGCCTGAACGGGCTGTACGGCCGCCGGAAGTGCATCATGCTGGCCAGCTTCATTTTTACAGTGGGGGGGATCGTTCTGAGCGTGGCACCTAATAAAACGGTTCTTCTTTTCGGCAGGCTTATTGTTGGTCTTGGAATTGGTGTAGCTTCTATGACAGTGCCGGTCTACATAGCTGAAGTGTCTCCTCCTCAGCTGCGAGGTCAGCTGGTcaccataaacacactgtttatCACAGGCGGGCAGTTCATAGCCAGCGTGGTGGATGGAGCCTTCAGCTACATGGGGCACAATGGCTGGAGGTATATGCTGGGTCTGTCAGTAGTCCCTGCTGTGCTACAGTTTTTgggattcttcttcttcttgcctgAGAGTCCTCGCTGGCTCCTGCAGAAAGGCGATACTCAGCAGGCCCGTGAGGTGCTCACACAGATCCGGGCCACAGAGAACGTGAACGAAGAGTATGACGGTATCAAGAGTATTATtgaagaggaggaaaaggaagCAGGAGGGGGACCAGTGCTGTGCCGTATCCTGGCCTGTGCTCCTGCCCGGAGAGCCCTGATTGTGGGATGTGGCCTTCAGATGTTCCAGCAGCTCTCTGGAATTAACACTGTAATGTACTACAGTGCCACAATTTTGCAGATGGCAGGAGTGCGGGATGATAAGACAGCCATCTGGCTTTCTGCTGCTACAGCATTCACCAATTTCCTGTTTACGCTGGTGGGTGTTTGGCTGGTAGAGCGGGTGGGCCGCAGAAAGCTGACTCTGGGCAGCATTGTTGGTACTGgtgtcagtctctctgtcttggCTGTGGGATTCctactttctgctcagaccTCTCCTCCAGTGACCCTTCACCCTAGTGACCCCACTTCTCCTAACTCAACCTGCACACACTATGGATTTTGTGAACAGTGTATGCTGGATCCAAACTGTGGCTTTTGTTACTATGAGAATGGCTCAACCATATCAGGCTCTTCCTGTGAGCCAGTTGATCCAGCCAACACAGAGCAAGCAGCGAGTGgcagGTGCTCCAATGGTACCCAAGAAGACCCAAGTGCATTGTGGGCCTATAACTACTGCCCAACCTCCTATTCCTGGGTAGTATTGCTGGGTCTCATCCTTTATCTGGCCTTCTTTGCTCCAGGGATGGGGCCCATGCCATGGACAGTGAATTCTGAGATTTATCCGCTGTGGGCTCGGAGCACAGGCAATGCTTGCTCTGCTGGCGTGAACTGGATCTTCAATGTCCTTGTGTCTCTGACATTCCTCCATGTGGCTGAGTACCTCACATACTATGGTGCGTTTTTCCTCTACACTGGCCTGGCTGTGCTTGGATTCCTCTTCTTGCTGGGCTGTCTGCCAGAGACCAAGGGTCTCATGTTGGAGGACATAGAGACTCTGTTTAGCAGAAGGCTCTGCACCTGTGGCGCACTGGGTGGcgaacacacacattacatcagGCCTCATTTGGATTTGGGAAAGTTGCATTATGGGACACTGGAACCAGAGGAAGGAATTGCTTACATATCACTGCAATAATGGTGAAGTTATACCTGGATTTGCCTTTCAGGAGCAATGAACAGCACATATGAGATCATGATCAATGaactgacactttttttttttttaaagatacttATATACACGTACTAACAAAGAGTCAGAATGGGTCTTGGTGTAATCTAGTTGAAACTAGAAGCTCTGTCACTGCATTTAACATGAACAAATCTAtggttttggggaaaaaatcatgCTCTACAAGTGTTTACAAGTCTGACAATcatatattaatgattatattgaGTTGGAGAGAAAACAACTTGATCCTTTAAGGAAtggtatatattttattatgttgaTTATTATGTTTCATTATGTTAGATTAACAGTTTCCAAAATAGACAAAGAACAATGTGAGCCCCCTTTAAATTTAATGGACAAACCCCGAAATTCTCCACattttggaaattaaatgtacatatgACGTAAgtgcatattttatatacatagtacatactgtatatttttgaaAGTATACACAATGATCTGACCACAGATCTCCTGCAGTATCTTTGCTGACCGCTAGGGTCCATGAACCCCATGTTGGAAACCCAGGTGTTGGACATAGCTcagcaacagcaaaaacaaaattccaGTCTACTGTATAGGCTGTCTCTTACATTATTCCATTAATGTAACTATTTTGTTTAGACAAAACTGTGTTCCTCTTTTTCTATTGAATAAAATTTGTCAGAATTAA
>XM_034307318.1
CAGGAAGTTTCACGCGCCGAGCCGGGGCTCACTGAGCAGACTAAAAGTAAGACAGCGACGGTTTCATTTACAGTCGTTAGGGGTCACTACACAATCACAACTCCACAAAACAGCTGAAACATCTGATGGTTATGAGCTGCACATCATGGACCAGGTGACGGGCAGCGCGAGGAGAGTGGAGGATGAGCGCAGGCTGATCCGAGCGCGCGCTACTGCCGCTCAGTCTGTGGGAAGCTCCCACAGCCAGGATGGCTCCTCGAGGTTTGTCTACgtcctctccttcttctccgCTCTGGGAGGCTTCCTCTTCGGCTATGACACCGGCGTGGTGTCCGGGGCTATGCTTCTGCTCAAGAAAGAGATGAACCTGAGCGCGTTTTGGCAGGAGTTGTTGGTCTCCAGCACCGTAGGCGCGGCGGCGCTCTCAGCTCTAGCGGGAGGCTGCCTGAACGGGCTGTACGGCCGCCGGAAGTGCATCATGCTGGCCAGCTTCATTTTTACAGTGGGGGGGATCGTTCTGAGCGTGGCACCTAATAAAACGGTTCTTCTTTTCGGCAGGCTTATTGTTGGTCTTGGAATTGGTGTAGCTTCTATGACAGTGCCGGTCTACATAGCTGAAGTGTCTCCTCCTCAGCTGCGAGGTCAGCTGGTcaccataaacacactgtttatCACAGGCGGGCAGTTCATAGCCAGCGTGGTGGATGGAGCCTTCAGCTACATGGGGCACAATGGCTGGAGGTATATGCTGGGTCTGTCAGTAGTCCCTGCTGTGCTACAGTTTTTgggattcttcttcttcttgcctgAGAGTCCTCGCTGGCTCCTGCAGAAAGGCGATACTCAGCAGGCCCGTGAGGTGCTCACACAGATCCGGGCCACAGAGAACGTGAACGAAGAGTATGACGGTATCAAGAGTATTATtgaagaggaggaaaaggaagCAGGAGGGGGACCAGTGCTGTGCCGTATCCTGGCCTGTGCTCCTGCCCGGAGAGCCCTGATTGTGGGATGTGGCCTTCAGATGTTCCAGCAGCTCTCTGGAATTAACACTGTAATGTACTACAGTGCCACAATTTTGCAGATGGCAGGAGTGCGGGATGATAAGACAGCCATCTGGCTTTCTGCTGCTACAGCATTCACCAATTTCCTGTTTACGCTGGTGGGTGTTTGGCTGGTAGAGCGGGTGGGCCGCAGAAAGCTGACTCTGGGCAGCATTGTTGGTACTGgtgtcagtctctctgtcttggCTGTGGGATTCctactttctgctcagaccTCTCCTCCAGTGACCCTTCACCCTAGTGACCCCACTTCTCCTAACTCAACCTGCACACACTATGGATTTTGTGAACAGTGTATGCTGGATCCAAACTGTGGCTTTTGTTACTATGAGAATGGCTCAACCATATCAGGCTCTTCCTGTGAGCCAGTTGATCCAGCCAACACAGAGCAAGCAGCGAGTGgcagGTGCTCCAATGGTACCCAAGAAGACCCAAGTGCATTGTGGGCCTATAACTACTGCCCAACCTCCTATTCCTGGGTAGTATTGCTGGGTCTCATCCTTTATCTGGCCTTCTTTGCTCCAGGGATGGGGCCCATGCCATGGACAGTGAATTCTGAGATTTATCCGCTGTGGGCTCGGAGCACAGGCAATGCTTGCTCTGCTGGCGTGAACTGGATCTTCAATGTCCTTGTGTCTCTGACATTCCTCCATGTGGCTGAGTACCTCACATACTATGGTGCGTTTTTCCTCTACACTGGCCTGGCTGTGCTTGGATTCCTCTTCTTGCTGGGCTGTCTGCCAGAGACCAAGGGTCTCATGTTGGAGGACATAGAGACTCTGTTTAGCAGAAGGCTCTGCACCTGTGGCGCACTGGGTGGcgaacacacacattacatcagGCCTCATTTGGATTTGGGAAAGTTGCATTATGGGACACTGGAACCAGAGGAAGGAATTGCTTACATATCACTGCAATAATGGTGAAGTTATACCTGGATTTGCCTTTCAGGAGCAATGAACAGCACATATGAGATCATGATCAATGaactgacactttttttttttttaaagatacttATATACACGTACTAACAAAGAGTCAGAATGGGTCTTGGTGTAATCTAGTTGAAACTAGAAGCTCTGTCACTGCATTTAACATGAACAAATCTAtggttttggggaaaaaatcatgCTCTACAAGTGTTTACAAGTCTGACAATcatatattaatgattatattgaGTTGGAGAGAAAACAACTTGATCCTTTAAGGAAtggtatatattttattatgttgaTTATTATGTTTCATTATGTTAGATTAACAGTTTCCAAAATAGACAAAGAACAATGTGAGCCCCCTTTAAATTTAATGGACAAACCCCGAAATTCTCCACattttggaaattaaatgtacatatgACGTAAgtgcatattttatatacatagtacatactgtatatttttgaaAGTATACACAATGATCTGACCACAGATCTCCTGCAGTATCTTTGCTGACCGCTAGGGTCCATGAACCCCATGTTGGAAACCCAGGTGTTGGACATAGCTcagcaacagcaaaaacaaaattccaGTCTACTGTATAGGCTGTCTCTTACATTATTCCATTAATGTAACTATTTTGTTTAGACAAAACTGTGTTCCTCTTTTTCTATTGAATAAAATTTGTCAGAATTAA

Function

symbol description
slc2a13 Enables ATPase binding activity; myo-inositol:proton symporter activity; and protease binding activity. Involved in myo-inositol transport and positive regulation of amyloid-beta formation. Is integral component of plasma membrane. Part of cell body; cell periphery; and cell projection.

NR:

description
PREDICTED: proton myo-inositol cotransporter isoform X2

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0055056 D-glucose transmembrane transporter activity molecular_function

KEGG:

id description
K08150 SLC2A13, ITR; MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919064.2 True 2944 mRNA 0.47 13 15567829 15576601
XM_026919065.2 False 2715 mRNA 0.48 13 15567829 15577214
XM_034307318.1 False 2705 mRNA 0.48 14 15567829 15577153

Neighbor

gene id symbol gene type direction distance location
kif21a kif21a,LOC102199929 coding downstream 1421 15522687 ~ 15566408 (-)
cpne8 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC106561599,LOC105026415,LOC106573107 coding downstream 47367 15481038 ~ 15520462 (-)
lsm14aa lsm14aa,LOC108274970,LOC108428766 coding downstream 89517 15468722 ~ 15478312 (-)
gpia gpia,LOC108274969,LOC108428767,LOC107679975 coding downstream 102048 15454180 ~ 15465781 (-)
hsd17b2 LOC108275401 coding downstream 115117 15448742 ~ 15452712 (-)
spi1a LOC108275191,LOC108442687 coding upstream 43085 15620299 ~ 15627455 (-)
fibina LOC108275273 coding upstream 63127 15640341 ~ 15642520 (-)
ano3 ano3,LOC107677449,LOC107752468 coding upstream 74991 15652205 ~ 15709179 (-)
LOC113529473 gas2,LOC107728426 coding upstream 149729 15726943 ~ 15749724 (-)
slc17a6a slc17a6,slc17a6a,LOC107555703,LOC107677426,LOC107570095 coding upstream 182412 15759626 ~ 15769464 (-)
G149057 NA non-coding downstream 190423 15377203 ~ 15377406 (-)
G148992 NA non-coding downstream 236397 15331207 ~ 15331432 (-)
G148919 slc25a3,LOC107569351,LOC107754323 non-coding downstream 429822 15136126 ~ 15138007 (-)
G148920 LOC108275086 non-coding downstream 435332 15130776 ~ 15132497 (-)
G148926 LOC108275086,LOC108428785,LOC106523631,LOC105938579,LOC107388471 non-coding downstream 439323 15127232 ~ 15128506 (-)
G149301 NA non-coding upstream 148037 15725251 ~ 15725901 (-)
G149305 fancf non-coding upstream 173945 15751159 ~ 15752470 (-)
G149312 NA non-coding upstream 181070 15758284 ~ 15758501 (-)
G149363 cyp11a non-coding upstream 320676 15897890 ~ 15898161 (-)
G149364 NA non-coding upstream 325226 15902440 ~ 15902642 (-)
LOC113529695 NA other downstream 338844 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 479769 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 755124 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 1732074 13825782 ~ 13835755 (-)
trnar-acg_1 NA other downstream 1777284 13790287 ~ 13790545 (-)
LOC113529470 LOC108275326 other upstream 134779 15711993 ~ 15719575 (-)
islr2 islr2,LOC107662462 other upstream 403950 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 563905 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1476139 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2627437 18204651 ~ 18214487 (-)

Expression


Co-expression Network