LOC113529693 (LOC108274564,LOC108433637,LOC108441836,LOC107750517)


Basic Information

Item Value
gene id LOC113529693
gene name LOC108274564,LOC108433637,LOC108441836,LOC107750517
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16256510 ~ 16262939 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919070.2
ATGGGTTCAGAGGGACAGCAGGACATTGAGATGGCCATTCTAACAGCTTTACTGAAAGGCACAAATGCCTCAGCCTCAGACCAACTGAGCTTGGCTCTTGCCTGGAATCGGGTGGATATAGCACGCAACCAAATCTTTGTTTACGGACACAACCTGCCACCTGCAAGTGCAGTAGCTAGTGCCACGTCCACCCTGAAAGCCAAGAGCTCCCCTGCAGCCTCACAGGGCATAGCTAAGGGCAGAGGCAAGAGGAGCAATGGGGGGAAGGCCAAGGCAGATGTTCTAGAGGAAATGGATCCTAGAAAGCTAGAATTACTCAACTGGGTGAACTCACTGGAGCAGGCAATGATGGATGCCCTGGTGCTGGACCGAGTAGATTTTGTTAAGCTGTTGATTGAAAATGGGGTCAACATTCACCATTTCCTCACCATCCCACGGCTTGAGGAGTTATATAACACGAAACTTGGACCTGTCAACACACTGAATGCTGTAGTGCGAGATGTTAAAAAAGGCAACCTCCCACCAGACTATCAAATTACACTAATTGACATTGGCCTGGTGATGGAGTACCTTATGGGAGGGGCCTATCGCTGTAACTACACAAGAAAAAGTTTTCGCTCTCTCTACAACAACCTTTATGGTCTTAAAAGGCCAAAGGCTCTAAAACTTCTTGGGATGGAGGATGATGAACCAAAtatgaaaggaaagaagaaaaagaagaagaaagaggaggaggtggaCATTGACGTGGACGACCCTGAGGTCAGCCGTTTCCAGTACCCATTCCACGAGCTGATAGTTTGGGCTGTGCTGACGAGGAGACAGAAGATGGCTCTGTTCTTGTGGCAGAGGGGAGAGGAGGCCATGGCTAAGGCCTTGGTGGCCTGTAAGCTTTATAAAGCCATGGCCCATGAATCCTCTGTCAGTGAGCTGGTGGATGACATATTTCAGGACCTAGATAACAACTCCAAGGAGTTTGGAACTTTGGCCTATGAGCTTCTGGACCAGGCATACAAACATGATGAACAGGTGGCCATGAAGCTGCTGACCTATGAGCTTAAGAACTGGAGTAACTCCACCTGTCTGAAACTAGCTGTGGCTGCCAAGCACAGAGACTTCATTGCCCACACATGCAGCCAGATGCTCCTTACTGACATGTGGATGGGCTGCCTGAGGGTTGGCAAAAACCCTGGACTCAAGGTAATTGCGGGCATCATCTTTCCTCCTTCAATCCTGCTCCTGGGTTTCCGTGTGGGTGATGACACCTACCAAGGCTGTGATGACAACACAGGTGCCAAGGACAAGGATGATGACAACAAATCCAGCAGGGATGCCACCACAGATGCACATTCAAAGAAAGGTGATGAAGAAGATGGCAGTAAGAAGCTGAGACATGTACCTATTGGAAGGAAGATCTATGAGTTCTACAATGCTCCGTTCACCAAGTTTTGGTTTAATACGATCTCGTACCTTGGGTATCTTATGCTGTACAATTACATTGTCTTGGTGAAGATGGAACGTTGGCCATCAATACAAGAGTGGTTGGTCATTTCCTACATACTGACACTCGGCctagagaaagtgagacagATTCTGATGTCAGAGCCTGGTAAGCTCAAACAGAAGATTAACGTGTGGTTGGAGGAGTACTGGAACATCACAGACCTGGTGGCCATCTCTACATTCCTTCTGGGTCTTCTCCTCAGACTACAGCCCGAACCTTACATGGGCTATGGCCGGGTTATATACTGCGTGGACATCATCTTCTGGTACATCCGTGTGTTGGATATTTTTGGGGTCAACAAGTACCTCGGACCCTATGTCATGATGATTGGCAAGATGatgATTGACATGTTGTACTTTGTGGTGATTATGTTGGTGGTCCTGATGAGCTTTGGGGTAGCACGGCAGGCCATTCTCCACCCAGATGAAGAGCCCACCTGGCGATTAGCCCGAAACATTTTCTACATGCCCTACTGGATGATCTATGGAGAGGTGTTTGCGGACTCAATAGACCGTAAGACTAGAATTGATAGTAAGATTCTTTTTCCTGCCTCCAGGGTAGATATTCAGTCTTACCTGTACTTTCCTCTATCTTACTGAGTTGTAGTGTATTGTAGTGTCACATTTGCGCATACAGTAGTTCTTACTAATTGATTT

Function

NR:

description
PREDICTED: transient receptor potential cation channel subfamily M member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919070.2 True 2160 mRNA 0.47 14 16256510 16262939

Neighbor

gene id symbol gene type direction distance location
LOC113530180 LOC108274564 coding downstream 2014 16251344 ~ 16254496 (-)
rps27l rps27l,zgc:136826,LOC107598918,LOC107752326 coding downstream 18353 16236143 ~ 16238157 (-)
cib2 cib2,LOC103027299,LOC107752320,LOC107573330,LOC104917862 coding downstream 57395 16180917 ~ 16199115 (-)
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding downstream 90511 16141596 ~ 16165999 (-)
dapk2b dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496 coding downstream 115606 16121657 ~ 16140904 (-)
trpm1b LOC108274564,LOC108433637,LOC107585966,LOC107750517 coding upstream 2623 16265562 ~ 16267986 (-)
otud7a otud7a,LOC108275340,LOC107715690,LOC107659507,LOC107752330,LOC107698115,LOC107550219,LOC107598848 coding upstream 63003 16325942 ~ 16362375 (-)
bnip2 bnip2 coding upstream 180516 16443455 ~ 16458395 (-)
anxa2a anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175 coding upstream 277913 16540852 ~ 16546270 (-)
ice2 ice2 coding upstream 284386 16547325 ~ 16566002 (-)
G149649 NA non-coding downstream 1024 16254647 ~ 16255486 (-)
G149643 NA non-coding downstream 5425 16249161 ~ 16251085 (-)
G149631 rps27l,zgc:136826,LOC107598918,LOC107752326 non-coding downstream 18402 16180906 ~ 16238108 (-)
LOC117597941 NA non-coding downstream 24701 16230614 ~ 16231809 (-)
G149495 NA non-coding downstream 161335 16093072 ~ 16095175 (-)
G149632 klf13,znf746,LOC108274922,LOC107550220,LOC107598847,LOC107752329 non-coding upstream 46951 16309890 ~ 16317926 (-)
G149718 NA non-coding upstream 159727 16422666 ~ 16424604 (-)
G149836 NA non-coding upstream 197852 16460791 ~ 16461045 (-)
G149841 NA non-coding upstream 233232 16496171 ~ 16498461 (-)
G149854 NA non-coding upstream 350045 16612984 ~ 16614416 (-)
acsbg1 acsbg1 other downstream 28176 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 264416 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 536935 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 1027525 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 1168450 15086113 ~ 15088060 (-)
LOC113529460 nrg4 other upstream 790414 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 1941712 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2040203 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 2041699 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 2091035 18353974 ~ 18364036 (-)

Expression


Co-expression Network