LOC113529694 (LOC108274566)


Basic Information

Item Value
gene id LOC113529694
gene name LOC108274566
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15769696 ~ 15771485 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919071.2
GAGCATGTTTTCTGAAATGGACAGCAACCACACTCTGGCATATTATGAAACTCTGTCTTGTAATTTATCAGCTCCTGGTCAAGGTGCGATGCGAATAGTCCAGCTCTTCTTGATGCCAGGCATCTTTTTGGCAGTGTTGGTCCTTGGTGTGCCCCTTAACATCATCTCCCTGTGGGTGTTGTCCCGCCGGTTTTCATGGGGTAACCGCAGTACCCTGTTTCTCCACAACCTAGCACTGGCTGACATTTCCTGGCTGATGGCCTTGCCGTTCCTCATCCAATTCCACTTGTCTGGGATGGAGTGGTCACTTGGTGTACTTTTTTGCAAACTTATCCGTATGTTATACCATAACTACTTCTACCTGAGCATATTCTTTGTGACCTGTGTGAGTGTAGACCGCTACCTGGCCATCGTTCACCCTGTTCACTCGCCTGTTCTCCTTACTCGCCAACGTGCCATTATGTTATGCATCACCGTTTGGGTGTTTTCCATAGTGATGAGCATCCCAGTGGCCCAGCTGACTTACATCTCGAACTGTCAGAGTGACAACAAGACAGCGTGCTTTATGTACATCTTTATGGGTACTGTAAAGCAGAGCTTGCCGTATTCCCTCTGGTGTACCTGTGTGGGATTCCTGTTTCCATTTATAGTGCTGAGCTACTGTTACATACGCAGTGTGTGCCAGCTGCGCAGACGGGTTGACCCACGTCTCAGAGGACTGGCCTGTGAACTTGGTGCAGCCATGGTCTTGTTTGGACTCTTTTACTTACCGTATCATGTAAGTCGGAATATGGCTATCGCCATGCCATCACTAGCACCAGATAATCCATCAGCATGGGAGGTGGCTGACTTAGTGTTTAGtctagagatgtgtgtgtgcagtctcaCTTCCTGTACTAACCCTCTATTCAGCTGCTTTTTGGGGAGGACACTCCGTAGAGAGCTGTGGTCAACTCTCACCAAGCTGTGGACGAAGCAAAGCTGTGGAAGAGTGGAGCCAGAGCTTAAGGAGGAGAGGGAAACTGAGGAGTCCACAATTAGAGTTGAGGCAACAAGTTAGACTCTGTGCCACCAGACCACCACTGCAACCTGTTTACACTTAGCAAGTGTTCACTTATCATTTCTCCATATGACATGGAAAGAGTGCCTCACATGCTACAAAATAAAGACTTAAATTGAAATAGAGCTACAATCCGGTGCTACAGTGCCCACTTGTGGTCATTTTAAAATACGAGTCATTTTGACTCCATTAATCATGTATCCTTTTGTTCCttctttctgtccctctttttgtctttctttttcctttccttgtAGACATTTAAGCTACCGTGCGTAAAAGACATTTCTTATATCTCATTGCTCTGCAGCTGAatgtggacacacacaaaccagaAAGGATGTCCCGATCTCTCATGCAAGCTGCATTAACACCCGTTCCTCATTCTCTAGCCAACAACTTTTGGATATTAACCCAGTTAATCTTGAGCTGTTAGGAGTGTGCTAGGTTTTTTACACTATACTTTCAGGTTCATCAGTATTTTTCCATATGCCTGTTTCCTCTCAGGGAAGCTTAGAGCCCCTTACTGATGGTGAAATCTCGT

Function

NR:

description
PREDICTED: P2Y purinoceptor 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919071.2 True 1604 mRNA 0.46 2 15769696 15771485

Neighbor

gene id symbol gene type direction distance location
slc17a6a slc17a6,slc17a6a,LOC107555703,LOC107677426,LOC107570095 coding downstream 232 15759626 ~ 15769464 (-)
LOC113529473 gas2,LOC107728426 coding downstream 19972 15726943 ~ 15749724 (-)
ano3 ano3,LOC107677449,LOC107752468 coding downstream 60517 15652205 ~ 15709179 (-)
fibina LOC108275273 coding downstream 127176 15640341 ~ 15642520 (-)
spi1a LOC108275191,LOC108442687 coding downstream 142241 15620299 ~ 15627455 (-)
ano5a ano5,LOC107728425 coding upstream 929 15772414 ~ 15802627 (-)
pkp3a LOC108275089 coding upstream 76653 15848138 ~ 15864702 (-)
ccdc33 ccdc33 coding upstream 132835 15904320 ~ 15936578 (-)
sema7a sema7a coding upstream 226404 15997889 ~ 16005363 (-)
man2c1 man2c1,LOC107752311 coding upstream 243435 16014920 ~ 16024858 (-)
G149312 NA non-coding downstream 11195 15758284 ~ 15758501 (-)
G149305 fancf non-coding downstream 17226 15751159 ~ 15752470 (-)
G149301 NA non-coding downstream 43795 15725251 ~ 15725901 (-)
G149057 NA non-coding downstream 392290 15377203 ~ 15377406 (-)
G148992 NA non-coding downstream 438264 15331207 ~ 15331432 (-)
G149363 cyp11a non-coding upstream 126405 15897890 ~ 15898161 (-)
G149364 NA non-coding upstream 130955 15902440 ~ 15902642 (-)
G149366 NA non-coding upstream 132207 15903692 ~ 15903902 (-)
LOC113529609 NA non-coding upstream 296944 16068429 ~ 16092930 (-)
G149495 NA non-coding upstream 321587 16093072 ~ 16095175 (-)
LOC113529470 LOC108275326 other downstream 50121 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 540711 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 681636 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 956991 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 1933941 13825782 ~ 13835755 (-)
islr2 islr2,LOC107662462 other upstream 209679 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 369634 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1281868 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2433166 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2531657 18303142 ~ 18305329 (-)

Expression


Co-expression Network