ambra1b (ambra1,LOC108432675,LOC107559958)


Basic Information

Item Value
gene id ambra1b
gene name ambra1,LOC108432675,LOC107559958
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 21938847 ~ 21952695 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919121.2
CTATGCGGCATCTTGGCTCGTCTAAAATGCCTGGCTACGTTAAAGATGCCTACAAGCCCATAAGCTAGTTAACTAccgttttattattattttttttcttcgaATCCTGTAAAAAAATTGAAGTTATCAAAATGGTCTGACTGTTACATTTGAACGGAGATGAATGTAACCCGGTGGATATGTGGGATGTTGTATGACATCGTCATTATAGGCTTAAAAAAACGCAGTTGCCAGTTGTGGTTGGTTTCTAATAGCAAACAAGCTTGTCTGTGTTAGCGAGCCTGCTAGCTAGCGAGTTTGTAGCTACGCCTTCGATGACACTTTTCACTGGAAAGACAAGAAAACAGTATGCATGGACTATATGCTGCTGAATAATAACTGACCCGTGCATGAGGGAGGGCCGAGCCGGACTCAGtctgctatagagagagagagagcaagagacagaaagatggcTGTGCAGAACAGGAATGCAGTGTTGGTCCTGTCGGGGCGAGAGCGCGGAGCTCGGATTTTGGGATCCCAGCGGCTGCTGCAGCAGCTTGTGGAGGACAGGACACGCTGGATGAAACTGCAGAGTCAGAAAGTGGAACTACCTGATAACCCTCGCTCAACCTTCTTGCTGGCCTTCAGCCCAGACAGGAACCTCATGGCTTCCACTCATGTCAATCATAACATTTACATCACGGACGTGAAAACGGGAAAGTGCCTGCACTCTCTGGTGGGTCACCGCCGGACCCCATGGTGTTTGACCTTCCATCCAACAATTCCAGGCTTGGTGGCCTCAGGGTGCCTTGATGGAGAAGTGCGCATCTGGGACCTACACGGTGGTAGTGAGAGCTGGTTCACAGAAGGGAACATAGCCATCGCATCCCTGGCCTTCcaccccacagcccagctgcTGCTTATTGCCACCAACAACGAGCTGCACTTCTGGGACTGGAGTCGACCCGAGCCCTTCGCTGTCGTCAAGACCGGCAGCGAGACCGAGCGCGTCAGACTTGTAAGGTTTGATCCTCTTGGACACAATCTTCTGACAGCTATCGTGAACCCAACCAACCAACAGaaCGATGAAGACTCTGATGTTCCCATGGACAGCATGGAAATGGCTCTGTTCCGCCAGCGTTCTGTGCTCCGTTCCCCTCCTGTTCGCCGCACTCCGATTTTGCACAACTTCCTGCACATCCTGTCATCTCGCTCTTCTGGAGGAACAGAACCCCGCGAACCTCCTCCCAGCATGCCTCTGTTTCAGTATCCCGGGCGGAGTGAGCTAGCAGATCGGCCTCCTCAGCAGAGCTGCACTCAGCACCTGGGCCTCGGTTGCCTATGCAGTCGTTGTGCTGCCACATCTCGAAACGTTCAGAGCCCCTCTGCTCTGCAGCCTACAGACTCCGTGcacactcactctcattctcacCCACAGCCTCCCAACCAATCACGTCCCTCCTCAGACAGGCCCTCTGCGTTTAGCAGCGTGCATAGCAGCACTGCAGGGAGCTCGCTGCACCGAGGCCTGTCATCTCTCAGAACTAGCATGGCTTTGGGTGGCACTCCAGAGCCCTCAGCTCGGCTGCCAGGTGGTGATTGGTCCAGTAGCTTGCTGGGCACCAGTTCTGGAGCTACACTGGACGAGGCAGCAGTGGGCATTATGGGAAGGGGGATCGTACCCCCTCCCAGGACCAGCTCCTCTTCTGTGGGTCTGCACTCCCTGCATAGGTACCCTGAcagctcttcctcctcctcttcgcCCATCTATACGTCGGCCACCGAGGGCCGCGGCCTAGGACTGCCTGGCACTGACCCCAGGCAGGGCAGAGCCAGTGACGGAACCAGTAGTGGGCATCACCCCTTTTATGATAACTCCCAACGGAACAACCCAGCTTCCATCCGCAACGTCCTCCAGTGCAACCTGAGCCGCTACTTCATGGAATACGAACGCATGCAGGATCTGGAGAGAGCAGGTTCTAGCCGGGAAGCAGGCACACAGGGGCCCATGCAGGACCTGCTATCCAGCAACGTAGACTCAGAGAGAGCAGGGCCTTCGCATCGGAATTCCGCCTATGCCGGGGATGGCACCAGCAGTTCCAACCTCCACCACAACCACCACAACCACCCTAACCGCTGCCGCTCATGCCACAACCTCCTCACGTTCAACCATGACACCCAGCGTTGGGAGCGTTCAAGCCAAGCTTCTTCTGCCTCAGCTCAGGAGGGCCCCCACTGGCAGATGCCTGTCCCTGCCTTCGAGGTACCTTCACAGAGTTCGAGAGAAGAATCTCATACCACAGAAGAGGGCCAGCAGCCTATGCAGGGCCACCAGCCTATGGGCCTGGTGTATAATCAGGACACAGGCCAGTGGGAGAGAGTGTATCAGCAGGCCACAGCCAATCCCTCCACTGAAGCAGCACAAGAAGCCTTAAACCCGGATGTGCCTGTGGACAATACTGACGAGGACACACTCCGAAGGAGGCTTTTGGAGTCATCGCTCTTTCCTTTCTCCCGGTATGACATGTCCGGTTCCCGTGATCATCCTATTTACCCAGATCCTGCCAGGTTGTCTCCAGCAGCATATTACGCCCAGAGGATGATTCAGTATCTGTCTAGAAGAGAAAGTATTCGTCAGCGCTCCTTACAGAATCGCCTGCGCACCCTATCCACATCCTCTGACAACCAGGCGGGCAATCCCTCCTCCACACCTGCAGAGGGCAGTGATGCCGACTATGAGGACATAGAGGAGCCTGGAGACCGGACAAGACACAGAATGCCCCGCAATGCACGAATGTCTGCACCCTCCCTTGGTCGCTTTGTGCCACGaagGTTCCTGTTACCTGAATATCTTCCGTATGCTGGTATTTTCCATGAGAGGGGTCAGTCGGGCCTGGCGACCCACTCCTCAATTAACAGAGTGTTAGCAGGGGCTTCAATTGGTGACGGCCAGTCTGCAGTAGCCAGTAACATCGCCAACACCACCTACAGACTGCAGTGGTGGGATTTCACCAAGTTCGACCTGCCAGAGATCAGCAATGCCTCTGTGAACGTGCTGGTTCCGCACTGTAAGATCTATAATGATGCTAGCTGCGACATATCAGCAGACGGGCAGCTACTGGCTGTTTTTATACCCAGCAGCCAGCGGGGCTTTCCTGATGAGGGCATCCTTGCTGTCTACTCTCTTGCCCCTCACAACTTGGGAGAGATGCTGTACACCAAGCGATTCGGTCCCAATGCCATCTCTGTGAGCCTGTCTCCAATGGGTTGCTATGTGATGGTGGGTCTGGCCTCGAGAAGGATCCTGCTCCATCCTACCACTGACCACATGGTGGCGCAAGTGTTCCGTCTGCAGCAGCCTCATGGAGGAGAAACTTCCATCAGGATGGTGTATAATGTGGTGTACCCCATGGCTCCAGACCAGCGCAGGCATGTAAGCATTAACTCGGCACGCTGGCTGCCTGAACCTGGCATGGGTCTGGCCTACGGGACCAGCAAAGGAGACCTGGTCATCTGCAGACCTGTTGATTACCGTAATGAGGGAGACAGCAGCACTGAACAGAACTCGGATCCTCTATTCactgccagcagcagcagtcgGACCCGTGGAGTGGATCGGACGAGCAGGTCTGGCTGGCGATTGGACAGAGACATGGGACTGATGAGCGCTATTGGCCTGCAGCCCCGTCAGCCCGCCCCCTCAGTGACCTCCCAGGGCACGCAGACACCTGTGGTGCATCTACAGAatgcagagacacagacagagagagagctgccCTCAACGAGTGCGTTTCAGACCACACACGCACCGCGACACCTGGCAGAGACAAGTGAAGTGCAGACTGCCAGTACAGAGACACTCCCACACAGTGAGCCACCAGACACAGTGGCTCATGGAGCCGCTTCCCACGATCCCAGTAcccacactgactcactgaacacCAACCACGGTGAGTCCCAGTCGGATCCTGCCCCAGGTGAAGATGCTCTTTCCCGGATCCGACGTCTGATGGCTGAAGGTGGGATGACAGCGGTGGTCCAGAGAGAGCGCAGCACCACCATGGCCTCCATGGGAGGATTCGGCAACAACATAGTGGTGAGCCACCGCATTCACCGCGGCTCTCAGACACCAGCAGGAGCAGCGCAGGCGAGTAACCCAGCACCTTCAGGGGAAAACAGCCTCAACACGAGACCAAACACGCTCCTCTCTGACACTTCAGACCAATCCTGCTCCTTCTGAGTCTCATGGTGGTACTCCTCTAACTGGAATCCCCTCTAGGTCTGCTCTTCCCTCTTCAGGCCCTAATGCAGTAGTGTTAGAGGCCCCGGCCATGGAGGACATGATGGAGGACAGTCAGAACGAAGAACCCGATCCATCCTCTAGGAGTGGGTACTTGGCCAACATCAGTAACAACGGcagcaacaacaatgacagtagCAGCAGAAATTACCCCGATGACCTGTACAGCAGATAGTGCTTCCTCCCACTGTCCTACACGTACATCAGTGGAGCAGGTTGATTTGGATTTGGCAAGATGTGAAAGGTTCTCTGTCAGGACCTGACAGAATGAACCCCTGAGGTGGACCTGTGTGCCTGTGTTTTGCCTCCTTCTGCTTTGGCCTTATGTGCAGAAGTAAGAGTGCCAAATttccactctgtctctcttcagaGGAGACAGCAGCCTCTCTACAAATATTTCACGGGGAATGTCTTCATGGAAAGCCATTGTTGTTGCACTTGGTCCTTGCACTTCAGTTGTAGTTTTGCTTCCTTTGAAACATGTCTCAGACTTTTGAGCATTCCATCGCCAGAAAGGGCTTCTACTTGAGTCATTCTTGTACTGCGGTACAGAATTAATGCGGTTTGGTTTACTGCTCCCTCAGGAGCCATCGTTGTCAGTCAAGTTCCAGGCACGGCTGCAGAAAACGTGCTTGCGTCACAAGGCAAGTTTCCATGCTTGCGTCACTAATGCGTTCATTTGAAGTGATTTGAATTTATTCTGAGGAATTGGAGAAACATTGAAAGGACACTGCTGTCTATTAATCCTGTAATAATCAGATTCACTGTTTGTTCATGGTTTTTGTTTGCAGAAGAGAGATTATAATCACAGCACTATAATCCACCCAAATGCTCCGCAGTTTCAACTAATATGTAAGGAGGGTGAGCGTAAAGGAGCCCAGATGttctttgaaatgttttatgatgATGGCTTTTAAGTTTCCATATTGgcaaatgcattttatttgttaccTGAAAAAGGTATTTCAGTTGAAAAGTGAAAGGTAATCATCAATTAAGCTGAGTCAGAAATTTCTTTTACACCTTCAAAgagggccaaaaaaaaaacaaagctacCACCACATCAATATTCTGTATCTGCATTGGTTTTGGAGACTTACTGAGCTGAGTTCATTTTAGTCGGGCTCTGTTCCCCTGAAACATGCTGCTTGTGCTCATCTGTGTTCAGCCTAGGATGCTAACGGTTCGTTTTGATGCCACCAGTCACAGCATGCCTGTGCCACCTATAGTGGCAGCTAGTGTCTGATTGCACTAAACACCCTGGTTTCTCTCCAGACTTTTTTATGTGAGGAATGACTGTCAGGACATATCTTCCAAATCAAGCCTGGGTAAAGAATTATACTTGAATTACATATAGTAGAATATCTCTAAGGAGCTGgccagttgttgttgttgttgttgtttaaaaaaaaaaaatggcctagAACCAGCAAATTGAACTTGACCTGCATTGAAACACATATGTTGCTTAATCACTGAACAGAGGGCATGTGCTTGCGCGTGCGTGTACTACTGTGCATGAGGTTGTATCACAGGTAAGTGTAGCATTTCCAATCAAGAAAATGACTTGAAAGCtaaatgtgcttgtttttaGGTAGATAAGTTTGCTGTCTGTTCCTGCGCTTCTGAAGCTTTGAGTATTTCCTAGTCATCTCTGCCCTGCGCAGGTGTCGAGCTCGACCTCCTGTGGGTGTAACAAAAGAAGCGTTGAGGTAGGCTTTCCCAGGTTCTCAGTGTCTGAGGCAAAACCACGAAGCACAGAACATcctagtttgtttttatttggtgTCTGAATGGCTTTTAACAATTTGTGCCCCTTAATAGCCCCGCTTTTAGCTGTCTAATATTTATCCTTAGTTTTTGACATCATAACACCTGCTGAGGCACCCTGCCTTCTCATTTCTCTACTACGTCTTGATATTCGAGACTCAGTCAATGTTGGACTGCTTTTCATAAAGAacaaagagagtgagtgagtgaattcttgacaaaataatacacacattgtTTTCCATTTCATGCTTGGAGTGGTTTTGATtgctattgtttaaaaatattaactaaaatCTCACCTCTGGTgctgtttatgtatttttttttttttataattattttacactttatatgGTTAGCCCTGTTATTCATTGACGACACTGATGgaattataatgtatttttgtttccCCAAAACACTGTTACTGATTTAAGAACTTAAATAGGGCAATTTGTGGGGGAAAAAGGGGAATAGCTGTAATAAGGGAGATAATgacatctgtttttatttgatgtcactctatactgtatatctgttgGTCTGATAAATCTGCTTGTAGATATCAAATGTTTgtagggttttgttttttttttttgttttgttttgttttgttttgttttttttttaaaaaaaagctttcccCATTGCATTTTTTGCCCACATCAGATAATGCAGTACATGTCTGAGAAACACATCTCTCTCTAgtattttattagcattttagGTTGTCTTAAGACGCTTTGGTCAACTGAAGCATACAGAACTAAAGAAGATACCAACATACAAAACCTGGTGTgaagtgacagacagacatacattAGCGACTCTGTGCCAGTTTTGGTGATCTCACTGCTGGGTCAGTGCTGAAGAAATCAAAGGTATTGGAAAAGCAGGATGTAAAAGTCCCCTTATCCGCTTATGTGAGAAGCATCTTTTATCAAGTAAAGAAGTGTGAAGTTAAGTCTTTAGTTAAATTAGGGGTTAGGTGTTTGTTGAACAAAGTGCTGTTGGACGCCAAAGATCCAGTGTTACGGTGGTTAAAAGAGGTTTAATAAAATGGGAATATTGAAAA

Function

symbol description
ambra1 Enables GTPase binding activity and ubiquitin protein ligase binding activity. Involved in macroautophagy; positive regulation of phosphatidylinositol 3-kinase activity; and response to mitochondrial depolarisation. Located in cytosol. Colocalizes with mitochondrion. Biomarker of multiple system atrophy.

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K17985 AMBRA1; activating molecule in BECN1-regulated autophagy protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919121.2 True 7130 mRNA 0.49 19 21938847 21952695

Neighbor

gene id symbol gene type direction distance location
glcea glce,glcea,LOC108274589,LOC107569710,LOC107673273,LOC107559985,LOC107740877,LOC107670231 coding upstream 2774 21932709 ~ 21936073 (+)
nox5 nox5,LOC107720789,LOC107559983,LOC107673291 coding upstream 8117 21916016 ~ 21930730 (+)
hal hal,LOC108275357,LOC103041200,LOC107670217,LOC107740873,LOC107673290,LOC107720790 coding upstream 22952 21909109 ~ 21915895 (+)
camk1db camk1d,camk1db,LOC108275359,LOC103041809,LOC107569715,LOC107670218,LOC107740872,LOC107673301 coding upstream 36230 21889672 ~ 21902617 (+)
dhtkd1 dhtkd1,LOC107559980,LOC107673284 coding upstream 53714 21867063 ~ 21885133 (+)
phf21ab LOC108275277,LOC108432679,LOC107673221,LOC105892361 coding downstream 51927 22004622 ~ 22034391 (+)
prdm11 prdm11 coding downstream 82556 22035251 ~ 22047329 (+)
bet1l bet1l,LOC107740886,LOC107559993,LOC107569707 coding downstream 117951 22070646 ~ 22074010 (+)
myo5ab LOC108275443,LOC108432640 coding downstream 129224 22081919 ~ 22107193 (+)
myo5c myo5c,LOC106561779 coding downstream 155652 22108347 ~ 22128791 (+)
G152838 NA non-coding upstream 127248 21810911 ~ 21811599 (+)
G152736 NA non-coding upstream 314183 21624450 ~ 21624664 (+)
G152403 NA non-coding upstream 813552 21122929 ~ 21125295 (+)
G152404 NA non-coding upstream 816011 21122322 ~ 21122836 (+)
G152391 NA non-coding upstream 875788 21059032 ~ 21063059 (+)
G152984 LOC100304581 non-coding downstream 205172 22157867 ~ 22158096 (+)
G152985 NA non-coding downstream 205737 22158432 ~ 22158654 (+)
G152987 NA non-coding downstream 207963 22160658 ~ 22160872 (+)
G153013 NA non-coding downstream 262559 22215254 ~ 22215502 (+)
G153026 NA non-coding downstream 277610 22230305 ~ 22231430 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other upstream 2190767 19661843 ~ 19748080 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other upstream 2553943 19323331 ~ 19384904 (+)
G151401 NA other upstream 2674954 19260624 ~ 19263893 (+)
faap24 faap24 other upstream 2813646 19121151 ~ 19125201 (+)
nfat5a LOC108274760,LOC108428435 other upstream 3142588 18747827 ~ 18796259 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other downstream 99919 22052614 ~ 22058158 (+)
arpp19b arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970 other downstream 124154 22076849 ~ 22078496 (+)
G153014 zmp:0000001167,LOC108274702,LOC107754369,LOC107551438,LOC107561184,LOC107655150 other downstream 263580 22216275 ~ 22266382 (+)
syt7a syt7,LOC108432693,LOC107655153,LOC107754343,LOC107551433 other downstream 378068 22330763 ~ 22446147 (+)
LOC113529801 LOC108274632,LOC108274583 other downstream 647099 22599794 ~ 22623807 (+)

Expression


Co-expression Network