pim3 (pim3,LOC108275436,LOC108436897,LOC107716739,LOC107598820,LOC107696273,LOC107573827)


Basic Information

Item Value
gene id pim3
gene name pim3,LOC108275436,LOC108436897,LOC107716739,LOC107598820,LOC107696273,LOC107573827
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18487484 ~ 18490931 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919197.2
gcacgcgcacacgcacacacgcgcacacacacgcgcacgctcGTGCCGACTGTTGCAGTGGAGTGGAGTGCAGTGTTCAGACACACGAGCGTTAGTCGGTGCTGTTAGTATGGCTGGAGAGGGACGTTATTGTGAATAGGGCTAATTGGCGAGCTTTCAGACAGTAAGGTGTTGAAACACCCTGCTGCATCTGATACTTGTGGTATTTTTAGGCTTACATTCTACATTCTTACGTTCTACATGTGATTTTGTTTAGGCTacacagaattttatttatcttcGTGAATTTTGGAGATTTGTTGATTTCCAAATCTCTTCAAAGATGCTGCTTTCCAAATTTGGATCTTTTTCTCACATTTGCGCCACGACTAACATTGAGCACTTGCCAGTGAAAATTCAGCTCCAGTCAGCTAAAGTGGAGAAGGAGCCGTTTGATAAGGTGTACCATGTGGGCTCGGTGCTGGGAAGCGGCGGGTTCGGGACTGTGTACGCCGCGAGCCGCATCTCAGACGGTTTACCGGTCGCTGTTAAACACGTGGCCAGGGAAAGAATTACTGAATGGGGCACAATTAACGGTTCGCTGGTTCCGCTGGAGATTCTCCTGATGAAGAAAGTGGGAAATACATTTCAGGGTGTGATTAAACTGCTCGACTGGTACGAGAGGCCTGACGGGTTTCTGATCATCATGGAGCGGCCGGAGATGGTGAAGGACTTATTTGACTACATCACTGAGAAGGGCGCACTGGATGAGGACACGGCCAGGGGCTTTTTCCGCCAGGTCCTGGAGGCTGTGCGACACTGCTACAGCTGCGGAGTAATCCACAGGGACATTAAAGACGAAAACCTGCTGGTCGATTTACGCACAGGAGATCTTAAACTCATCGACTTTGGCTCAGGAGCCATTCTCAAGGATACTGTGTACACTGACTTCGATGgtaCAAGAGTCTACAGCCCACCAGAATGGATTCGCTACCACAGGTACCATGGACGCTCTGCAACGGTGTGGTCACTTGGTGTGCTGCTGTATGATCTGGTTTGTGGAGACATCCCATTTGAGCATGATGATGAGATTTTGAAAGGTCATCTCTTCTTCAGAAGGACAATCTCCCCTGAGTGTCAACAACTCGTCAAGTGGTGTCTCTGCTTGAGACCATCGGACAGACCTACATTGGAACAAATATTCGAGCATGAGTGGATGCATACAGAGAAAGACTCAAAACCTCTGACCAGGGATATCACTCTTCATGCAATCTGCACAGACTCCTCATCCAGCACAAGCTCAAGCAAAGAAAGCCTCTGACAGCAACGGATATACTAACTCATTTATGACCCAAAATTGtttggacttgtctttaaattactttaaattatttttcagtctttttttgtttcaaatgaatatttttttaacactcaTGGGAAGTGCAAATGCAGTGATGCTAGCAACCCTATGGCCATACTCTTTGCTCTTATAGAGCTTATTCTTTAAATTTAGTTTTAACTGTTACTAGTGCCTTTTTCTTCCCTAGAAAGCTGCTTGGTGGGAcagtaaaaactttttttttttttgctccctcGCCCCCTTGTGGTGGactatattctctctctccacccccTTCTCACATGCATTATATACAGATAAACCCTTTTACTACTCCACTACTCCATCTCAGCTGTTGCCACATATTGGCTTTTGGATGGTAGATACTTTAGTGAATTGCACAATCAATGCAATATTAATAGATTTTAAGTTTGAAtacaagtatttatttatattcactcccatgtgttatttattaatacaaagCAAACATTCCACATTCTgtggctatttatttatttattcattttataccatCAGCAAAAAGGAAATAATGCTAGATTTGATACCCTTGCCTTATCCTGTAGTTGAATCTAAATACCTGCAAATAAACTATGCCTGTCTTATACTGATACACA

Function

symbol description
pim3 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm. Orthologous to human PIM3 (Pim-3 proto-oncogene, serine/threonine kinase).

NR:

description
PREDICTED: serine/threonine-protein kinase pim-3

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919197.2 True 1959 mRNA 0.44 6 18487484 18490931

Neighbor

gene id symbol gene type direction distance location
pkmb pk,LOC108275437,LOC108436941,LOC107716749,LOC107661438,LOC107696282,LOC107573699 coding upstream 112120 18368046 ~ 18375364 (+)
LOC113529962 LOC108275334 coding upstream 169759 18306241 ~ 18317725 (+)
amn1 amn1 coding upstream 184559 18297594 ~ 18302925 (+)
si:ch211-106e7.2 NA coding upstream 190782 18276911 ~ 18296702 (+)
slc41a2a NA coding upstream 232714 18245570 ~ 18254770 (+)
brd1b LOC108436948,LOC108275266,LOC107661448 coding downstream 814 18491745 ~ 18503991 (+)
prr5l prr5l,LOC107573861 coding downstream 77682 18568613 ~ 18577366 (+)
api5 api5,LOC107696269,LOC107753602 coding downstream 88180 18579111 ~ 18586692 (+)
hsd17b12a hsd17b12,LOC107696265,LOC107661451,LOC107573907,LOC107716735,LOC107753600 coding downstream 131257 18622188 ~ 18634768 (+)
alkbh3 alkbh3 coding downstream 145758 18636689 ~ 18645706 (+)
G150932 LOC108436944 non-coding upstream 43432 18425317 ~ 18444052 (+)
G150933 NA non-coding upstream 63264 18423558 ~ 18424220 (+)
G150900 NA non-coding upstream 120376 18366882 ~ 18367108 (+)
G150873 LOC108275329,LOC102219286,LOC107096723,LOC103150244,LOC103466419,LOC103046663 non-coding upstream 141755 18342243 ~ 18345729 (+)
LOC117598020 NA non-coding upstream 348339 18130846 ~ 18139145 (+)
G150952 NA non-coding downstream 39208 18530139 ~ 18530708 (+)
G150954 NA non-coding downstream 46330 18537261 ~ 18537855 (+)
G150958 NA non-coding downstream 60962 18551893 ~ 18552137 (+)
LOC113530068 NA non-coding downstream 110608 18601539 ~ 18620821 (+)
G151093 NA non-coding downstream 454344 18945275 ~ 18945942 (+)
tmem17 tmem17,znf774,LOC107678976 other upstream 303451 18182554 ~ 18184033 (+)
G150589 LOC108274445 other upstream 644949 17834237 ~ 17842535 (+)
LOC113529564 ano9,LOC108442698 other upstream 2664893 15807990 ~ 15822591 (+)
svip svip other upstream 2762393 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 2834800 15563306 ~ 15652684 (+)
rfwd3 rfwd3,LOC107754982 other downstream 184079 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 230664 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 256896 18747827 ~ 18796259 (+)
faap24 faap24 other downstream 630220 19121151 ~ 19125201 (+)
G151401 NA other downstream 769693 19260624 ~ 19263893 (+)

Expression


Co-expression Network