aass (aass,LOC107698474,LOC107752301,LOC106584550,LOC107753626)


Basic Information

Item Value
gene id aass
gene name aass,LOC107698474,LOC107752301,LOC106584550,LOC107753626
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18089100 ~ 18111444 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919209.2
CTCGCTCAGACTCGGGATTGGTGGGACGTAGGAGGCAAGTCAAGTGCTATTTCGGACAGAACCAGGGCTTGAATCACTTAACAGTCAGAAGCGTTTCCAGTGTAGAAACAGTCCGCTCAGAGCTGATCTTATTACACTGCAGCAATCCGTGTTGACTGGCAGTCATAACTTTTCCGTGAAGCCTGCGTGAGCCATGCTGCGACTTGTTAGAGGCCAGAGCAGGAGGGTGAAAGGCTGTGTGCGCAGCCAGCGGAGGTCGAGTCATCATAAGAGCGTGATGGCAATCCGAAGAGAGGACGTTAATGTATGGGAGAGACGGGCACCCCTTGCCCCGCAACATGTGAAGGAAATCACTGCAGCAGGCCACAAAGTGCTGGTGCAGCCCTCCAATAGAAGAGCCATCCACAACAGATTCTATGAGAAAGCAGGAGCCATTATACAGGAGGACATCTCAGAGGCTTCTCTCATCATTGGTGTGAAGAGGCCACCAGAAGAAAAAGTCATTCCACAAAAAACCTACGCTTTCTTTTCCCACACCATCAAAGCCCAGGAGGCTAACATGGGTCTTCTAGATGATATACTCAAAAAGGAAGTGCGGCTGCTTGATTATGAGAAAATGGTTGACGAAAATGGGTTCAGAATTGTTGCATTTGGAAAGTGGGCTGGTGTTGCTGGaatgattaacattttgcaTGGGCTAGGTCTCCGATTCCTGGCCCTTGGGCACCACACTCCCTTTATGCATATTGGAATGGCACACAATTACAGGAACGTCAGTCAAGCCATACAAGCAGTGAGGGATTGTGGGTATGAGATCTCACTGGGCCTCATGCCTAAGTCCATTGGTCCACTCACATTTGTGTTCACTGGTACAGGCAATGTATCTAAGGGTGCACAAGACATTTTCAATGAGCTTCCATGTGAATATGTGGAGCCACATGAACTGAAAGAGGTCTCCAAATCAGGAGACCTGACAAAAGTTTATGGTACAGTGATCAGCAGACACCACCATTTAATTCGAAAGAGTGATGGGGTTTATGATCCTTTTGAGTATGAGCACCATCCTGAGCGTTACACCTCTCACTTCAGATCCACTGTAGCACCTTACACAACCTGTCTGATAAACGGCATCTACTGGGACCCACACACTCCAAGGCTGCTGCGGCGACTGGATGCACAGAAGCTTATGAGACCTTCAAAATCTTTAGCCGCAATGACAGAAGGCTGGCCCTCCCTGCCACACAAGTTCTTGGCGATCTGTGACATTTCTGCAGATACAGGTGGTTCCATTGAGTTCATGACAGAGTGCACCACCATTGAGAAGCCCTTTTGCATGTATGACGCCAACCAGCACATAGACCACGACAGTGTGGAAGGAAATGGCATTCTCATGTGCTCTATTGATAACTTGCCAGCCCAGCTTCCCATTGAGGCTACTGAGTATTTTGGCAATCGCTTGTTCCCCTACATTTGGGAAATGCTTCAGTCAGATGCGACAAGACCACTGGATGAAGAGAACTTCTCTCCACAAGTCAGAGATGCTGTAATAACATCTAACGGGAAGTTGACTACTAAGTTTGAGTACATTCAGAAGTTAAGAGAGAAAAGGGAATCAGAACAGATCCTGAAGAAAAGCGGAATGAAGCGTGTCTTGCTGCTAGGCTCTGGCTATGTGTCCTGCCCAGTTGTTGAGTATCTCACCAGGGATCCTGGCACCCAAGTCACAGTGGCATCAGTGCTTCTAAGTCAGGCTGAGGAACTGGCTGCCAAATATCCAAACACCATACCTGTGAGGCTTGATGTGACTAGCCAAGAGGGCCATTTCGAGTCCCTGGTCAAGGATCATGACCTGGTCATCAGCATGCTGCCATATAATTATCATCCTTTGGTAGCTAAATATTGCATCAGTAAGAAGGTGAATCTAGTGACAGCCAGCTACCAGTCTTCAGCCATGAAAGAGCTCCAGAAGTGTGCTGAGGAGGCTGGCATCACCATAGTCAATGAGATGGGCCTGGACCCTGGCATTGATCACATGTTGGCCATGGAGTGCATCGACCAGGCCAAGGCAGACGGTTGCACTGTGGAATCCTACAGCTCTTTCTGCGGTGGTCTTCCCACCCCAGAGTGTTCTGACAATCCACTGCGTTACAAATTCAGTTGGAGTCCATATGGAGTGTTGCTCAATACCATCAGTCCTGCCACTTATCGCAAAAACAACCAGgtGATCAGTATTTCCCCTGGTGGGTCTCTAATGGATGCCACCGTGCCCATGGACTTCTTGCCAGGTTTTAACCTTGAGGGCTTTCCCAATCGAGACAGCACCAAATATGCTGAAGCCTATGGCATTgagtctgcacacacactgatcagagGGACTCTACGCTTTAAGGGCTTCTCCAGAGCAATGAGCAGCTTTGTAAAACTAGGCCTGATCAACACTGAGCCTTGCCCAATGTTGGAACACACAGCCGATCCTGTCTCCTGGAAAGAGCTCCTGTGTAAGCAGATTGGCCTGACCTCTGATGTTAGCACTGAGTCTTTTGAGGAAGCTGTGTTCAATCAAATTGGAAGAGATGAGTTCAGGATGCAGACTCTCAAATGGTTTGGGATGCTGAGTGAGGAGCCTGTGCCTCATGCTAACACCATCCTGGAAGCACTTGCTAAACACCTGGAGGCTAAGCTGTCTTTCGataaaggagagagagatatgatCATCATGAAGAATAAGATTGGCATCAGACATCCTACAGGAGAACTTGAGATGAAGCACATCAGTCTGGTGGTCTATGGAGATGCTAATGGCTTTTCTGCCATGGCCAAAACAGTGGGCTACCCTGCTGCTATTGCAGCTCGTATGGTCCTGGATGGTGAGCTGAACACTAAAGGACTTGTTGTACCAATAACGAAGAATATCTATGCACCTGTTTTGAGGAGACTTCAGCAGGAAGGCATTCAGTTCACCACCAAAAGCACAATATCAGAGTAATGTTCTGTAAAATCTACTCACGCTGCTGATAAATGGATGATTATCTATTTTCTTAATCAACTGCTTTTCACTTTTGTCTGATGAACTACTGAATGCTTTGGAATGTTTGCTTCCTCCTGTAAAATTACTTTATATTGTAACGGTTTTATTTAGATATTCCAGCTTGTAGGTCAGTACATATCCCTCTACAACCCTTAAAGCACCTGTGCATCAAGCAGTGAGAAGGGCATGATGCTTTACTATGATGTAttcaacacatttatttcaaccaagaaaaaaactgaactgaactaaaCTAAACTGCACATTTTTTGTCAAACAGACGAATTTGTTTTCTAGTACGTATTTCAGatgggttcccaaactaggggagAAACTCActatttcctctttttgtttaaatatcGAAGGCAGATTTTgtgtgctgttgtttttaaaatgttacttgGAGTCACCTTCAGACAAGCCACATTTCAAGTAATAGGGTATTTGCTATTTTAGGCTTTTTCACTATcctaacacactgcagtagcaataagaaaaaaaatggaagaatttCACCATCCATCTACCTctgctaaacaaactagcatacTTGTGCACTATTCTCAACCGTTATTGAGTTCTAACACTAACCGTTTTTCTaacattacagttagtgtttgaattttaaaaacctctcaaaCCTCTTCAGACTTACAGAaatgtctgttttgtgtaccagtcttctggattttctagattagtaaatacttttgaatgtaagatCAGAGTAGTCGATTTGCGACACAGCCCATGACAGCAGTCATTACTACGGCGTGCagttttaaaggtgcattaggtaagatttctCAAAATTTGTCAAGAGTAGGTCTCTGATTTGCAGGAGTCCTATATTGTAAATCTGGAGTTTTACAAATGTAGGTGAAGGTTTGGGGTAGCAGAAAATTCATGATGTCCATTTGAGTTCATTTACCCATACAGTTTGGGAACCCTTGATATATTTTCTAGTTTCTTTCTGGAATTTTTGTTCTAGTATTTCAGTTACTGTCAATAAATTTCATGTTAATAAACTTCGAATTTCATAGCTAGAAATGTGACTGAAGGGAGGTTCAGTGCTCTTTGTTTAGTTTCTGAATGccatcattaatttatttaaagcagCATGTCAGTAGCTCCAGTCACAGCACTCATCAATACAGAACTGACACTTCTCACCTGTATGATATCAAAACTGATGAGTTGTTCCTCATGAACCCCAATTCATAATTTGATCATATTTGTTACAAATTGTATATATCTCtaatctgtgtaaaaaaaataaataaataaaaataaaaaataaataaattaaaaaaagtccaTCAATATGTACTTTtatgaaacaataaataaatggcagAAAAAATAATTGCTAAACAAACCCAATGAGATATTTTGGCAGTGATACTGTAGAAAGCTTGTCATAATATGATAAAGGTCAGATTTTTGCAAATCCATTGAACTTTTGGATATTTGCAAACCATGGAAGCCAATCACTATtcaaataaactgattttaacaGATTG

Function

symbol description
aass Predicted to enable saccharopine dehydrogenase activity. Predicted to be involved in lysine biosynthetic process via aminoadipic acid. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in hyperlysinemia. Orthologous to human AASS (aminoadipate-semialdehyde synthase).

NR:

description
lysine ketoglutarate reductase/saccharopine dehydrogenase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K14157 AASS; alpha-aminoadipic semialdehyde synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919209.2 True 4554 mRNA 0.43 24 18089100 18111444

Neighbor

gene id symbol gene type direction distance location
fezf1 fezf1 coding upstream 2365 18082942 ~ 18086735 (+)
cadps2 cadps2 coding upstream 9478 17949291 ~ 18079622 (+)
slc13a1 slc13a1,LOC108274433 coding upstream 146145 17934290 ~ 17942955 (+)
iqub iqub coding upstream 157954 17921555 ~ 17931146 (+)
wasla wasl,wasla,LOC108275301,LOC107753630,LOC107659464,LOC107598884 coding upstream 178239 17890887 ~ 17910861 (+)
slc15a5 slc15a5,LOC107598876,LOC107575796 coding downstream 60487 18171931 ~ 18180647 (+)
cnot2 cnot2,LOC108275083,LOC108436929,LOC107678985,LOC107696293,LOC107752336 coding downstream 102679 18214123 ~ 18227661 (+)
slc41a2a NA coding downstream 134126 18245570 ~ 18254770 (+)
si:ch211-106e7.2 NA coding downstream 165467 18276911 ~ 18296702 (+)
amn1 amn1 coding downstream 186150 18297594 ~ 18302925 (+)
G150609 NA non-coding upstream 173858 17914625 ~ 17915242 (+)
G150592 NA non-coding upstream 176517 17911637 ~ 17912583 (+)
G150590 LOC108274445 non-coding upstream 248651 17832766 ~ 17840449 (+)
G150407 NA non-coding upstream 386342 17702554 ~ 17702758 (+)
G150268 NA non-coding upstream 631965 17456920 ~ 17457135 (+)
LOC117598020 NA non-coding downstream 19402 18130846 ~ 18139145 (+)
G150873 LOC108275329,LOC102219286,LOC107096723,LOC103150244,LOC103466419,LOC103046663 non-coding downstream 230799 18342243 ~ 18345729 (+)
G150900 NA non-coding downstream 255438 18366882 ~ 18367108 (+)
G150933 NA non-coding downstream 312114 18423558 ~ 18424220 (+)
G150932 LOC108436944 non-coding downstream 313873 18425317 ~ 18444052 (+)
G150589 LOC108274445 other upstream 246565 17834237 ~ 17842535 (+)
LOC113529564 ano9,LOC108442698 other upstream 2266509 15807990 ~ 15822591 (+)
svip svip other upstream 2364009 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 2436416 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 4259769 13790973 ~ 13829331 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 71110 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 563566 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 610151 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 636383 18747827 ~ 18796259 (+)
faap24 faap24 other downstream 1009707 19121151 ~ 19125201 (+)

Expression


Co-expression Network