gabrb2a (gabrb2,LOC107554707,LOC107684828)


Basic Information

Item Value
gene id gabrb2a
gene name gabrb2,LOC107554707,LOC107684828
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7467772 ~ 7525350 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919243.2
TAGCAAGGCTACTCTTTGATCTTGAGGCTCGGTGTGCGCATGCGCGTGAGTCGCGCTCGGCTTTACTGCACTGGCTGGGACTGAAGTTGGATGCGCGGCGCGCGCTGTCTTCCTTCAGCTTGGTccacaagaagaaaaaaaatcatcaaaactGTTGCAATGGAGAGGATGAGGAAATCGCAGTGCATCTTCTTGCTGTGTCCCTTCATCATGACTGCTGTGTGCGCgcaaagCAGAGACTCTAGCAATATGCCTGTAGTGAAAGACACAGTGGACAGACTGATGAAGGGATACGATATCCGACTGAGGCCGGATTTTGGAGGGGCTCCGGTGGCGGTTGGCATGAATATAGACATTGCCAGCATAGACATGGTGTCCGAAGTAAACATGgACTACACCCTGACCATGTATTTCCAGCAGGCATGGCGGGACAAGCGTCTCTCGTACTCAGAGATCCCACTGAACCTGACGCTGGACAACCGCGTGGCCGATCAGCTGTGGGTGCCTGACACTTACTTCCTCAATGACAAGAAGTCCTTCGTGCATGGCGTCACGGTGAAGAACCGCATGATTCGCCTGCATCCTGATGGCACCGTGCTGTATGGATTGAGGATCACCACCACAGCAGCATGTATGATGGACCTGAGACGCTACCCGCTGGATGAGCAGAACTGCACACTGGAGATTGAGAGCTATGGATACACCACAGATGATATTGAGTTTTACTggagaggaggagatggagcTGTGTCTGGAGTGGAGCGCATTGAGCTGCCCCAGTTCTCCATCGTGGACTACAAGCTCATCTCGAAGAATGTAGTGTTCTCCACAGGTTCATACCCACGTCTATCGCTGAGCTTCAAGCTGAAGAGGAACATTGGCTACTTTATCCTGCAGACCTACATGCCATCCATCCTGATCACCATTCTGTCTTGGGTCTCATTCTGGATCAACTACGATGCCTCTGCTGCCCGTGTAGCCCTAGGTATCACCACGGTGCTGACCATGACCACCATTAACACCCATCTGAGAGAGACTCTTCCCAAGATCCCCTATGTGAAAGCTATAGATATGTACCTGATGGGCTGCTTCGTCTTTGTGTTCCTGGCCCTGCTCGAGTACGCCTTCGTCAACTACATCTTCTTTGGTCAAGGCCCCCAGAGGCAGAAGAAGGCAGCTGAGAAAGCAGCCACCGCCAACAACGAGAAACTCCGACCTGATCCGAACAAGTGGATGGTGGGAAATGTAGTTCAGAGAGACGATGCTCTGTATGCCAGAATGAAACAGAGGGAAATTGACGTGTATGACTCGATGTGGGATCCAATCTTTGCCGACGATGCTGCATTAGGACTAGGCGAGCAGAGACTTAAGATGAATCCGGATGATATCCGGCTGACCACAGTGGAGATGAAGAATGAGATGGGTCCTGGCGATCTCTCCCGTGGTCTGGGCGACCCGCGAGGTGCCATGCTGGCGTATGACAGCTCCACGCTGCAGTATCGACGGGCAGCACTGGCACGCCACAACTACGGCACCGGTGctctggagaagaagaagagccgTCTACGCCGACGTGCTTCGCAGCTCAAGGTCAACATCCCTGACCTGTCTGACGTCAACTCCATCGACAAGTGGTCCAGGATGGTCTTCCCAACCGTCTTCTCATTCTTTAATGTGGTCTACTGGCTCTACTATGTCCATTAAGAAGGGCCCGGGAGAGAATAaagtacaaaaacattcaaaagataaaatatataaaacactgagtCCCTTTTATTTCTcgaaaaatagattttatggaGGCAAAGGAGTCAGGATTGgctctttttttgttctgaGAACACCATAATGACTGACAAAGACACTAAACACAACCAGACTGAAAGTTGCAGAATTTTAATAGATCACGTATATTGTCATTCGTAACTTACTCTGTGGACAAATATTTATGCTTGCgtttgcatatattttaaagtttttttttgttgttgttttgtttttttgctgattATATCTATTTACTTTGTAGCCAATGCTATGTGTGTCCAGGAAAGTTTTAGAGATGATTTTTTTCAAGGGCTCATCCTTCAAagccctttttttcccctatagtTAAACTGTTAGACATCTTTTAAAAGCAtgctttggtttggttttttgtCTACATCTCTTGCTGTGAGATGAAGCacaatgcattttcattttgaatagCTAAAGATCCTTctattctacaaaaaaaaacatttgatttgGTGCAATGCAGAGCACTGAGTCTCTAAAAGGAAAACAGGGTAAACACACACCAGGTAACTTCATCATAATGTTGGCATTGTTATCGGCGCAGATGTGAATGGGGCAATAGGGGGCGCTCTTTCCTATCAACCCAACAGACTTTCTTCGCCCCTCCTATGGTGGGGACTTTTGAAGGTGATTGAATGAGATTTGGGCAAACATCAGTTGTGTGGATTGTTTGAACCCCGTGGCTGGACATAATGAAGATTCTCTTCATCCTCTTAATTCGACAAACTTTTGTCTGGCTTTGTTCCAGATCCAAGTCAtcaaaaacatcacacactctttatctCTACTCACACGTGAGTGGGACATTATGGCTGACTGACATCTCTCCGACATGATATAATGAAAAAGGTGAGTTCCATAAAAGATATAATTATAATCCATTAACATTACCAATAGATTTAAGTTAAAAAAGAGCTTATAGATGATattaaatcatgttaaaaagaattttataaTTCATAGTTATAATATTAGGTGTTAATGTTACAAATCATTATTTAAGCAGGTATATTTTGGTGTATTAGCTTTCTTATTATAAAAGATCTCTACTGGGATGCGGAGAAAAATTAtctaaaggaagaaaaaagactgAACTTTCTCAAGGCCTGCACATGTGAAAAGGATGGTATGGACAGAACAGAGCGTGAATGAAATATTGTTTTGAAGTCAACTTTTCAGAACAGGGAAGTATCTGGAAAGATCAATCAAGGCATCTGTAAGGTGATTTTGTATCAAATCCTGTACATTATAATGATATTTCATAATgatctgtaaatatatattgtgtaatgACTGTCAAGAATAACAATATGTatctaaattaaattattaaagctGAA
>XM_026919245.2
TAGCAAGGCTACTCTTTGATCTTGAGGCTCGGTGTGCGCATGCGCGTGAGTCGCGCTCGGCTTTACTGCACTGGCTGGGACTGAAGTTGGATGCGCGGCGCGCGCTGTCTTCCTTCAGCTTGGTccacaagaagaaaaaaaatcatcaaaactGTTGCAATGGAGAGGATGAGGAAATCGCAGTGCATCTTCTTGCTGTGTCCCTTCATCATGACTGCTGTGTGCGCgcaaagCAGAGACTCTAGCAATATGCCTGTAGTGAAAGACACAGTGGACAGACTGATGAAGGGATACGATATCCGACTGAGGCCGGATTTTGGAGGGGCTCCGGTGGCGGTTGGCATGAATATAGACATTGCCAGCATAGACATGGTGTCCGAAGTAAACATGgACTACACCCTGACCATGTATTTCCAGCAGGCATGGCGGGACAAGCGTCTCTCGTACTCAGAGATCCCACTGAACCTGACGCTGGACAACCGCGTGGCCGATCAGCTGTGGGTGCCTGACACTTACTTCCTCAATGACAAGAAGTCCTTCGTGCATGGCGTCACGGTGAAGAACCGCATGATTCGCCTGCATCCTGATGGCACCGTGCTGTATGGATTGAGGATCACCACCACAGCAGCATGTATGATGGACCTGAGACGCTACCCGCTGGATGAGCAGAACTGCACACTGGAGATTGAGAGCTATGGATACACCACAGATGATATTGAGTTTTACTggagaggaggagatggagcTGTGTCTGGAGTGGAGCGCATTGAGCTGCCCCAGTTCTCCATCGTGGACTACAAGCTCATCTCGAAGAATGTAGTGTTCTCCACAGGTTCATACCCACGTCTATCGCTGAGCTTCAAGCTGAAGAGGAACATTGGCTACTTTATCCTGCAGACCTACATGCCATCCATCCTGATCACCATTCTGTCTTGGGTCTCATTCTGGATCAACTACGATGCCTCTGCTGCCCGTGTAGCCCTAGGTATCACCACGGTGCTGACCATGACCACCATTAACACCCATCTGAGAGAGACTCTTCCCAAGATCCCCTATGTGAAAGCTATAGATATGTACCTGATGGGCTGCTTCGTCTTTGTGTTCCTGGCCCTGCTCGAGTACGCCTTCGTCAACTACATCTTCTTTGGTCAAGGCCCCCAGAGGCAGAAGAAGGCAGCTGAGAAAGCAGCCACCGCCAACAACGAGAAACTCCGACCTGATCCGAACAAGATGAATCCGGATGATATCCGGCTGACCACAGTGGAGATGAAGAATGAGATGGGTCCTGGCGATCTCTCCCGTGGTCTGGGCGACCCGCGAGGTGCCATGCTGGCGTATGACAGCTCCACGCTGCAGTATCGACGGGCAGCACTGGCACGCCACAACTACGGCACCGGTGctctggagaagaagaagagccgTCTACGCCGACGTGCTTCGCAGCTCAAGGTCAACATCCCTGACCTGTCTGACGTCAACTCCATCGACAAGTGGTCCAGGATGGTCTTCCCAACCGTCTTCTCATTCTTTAATGTGGTCTACTGGCTCTACTATGTCCATTAA

Function

symbol description
gabrb2 Contributes to GABA-gated chloride ion channel activity. Involved in gamma-aminobutyric acid signaling pathway and inhibitory synapse assembly. Located in plasma membrane. Implicated in autistic disorder and developmental and epileptic encephalopathy 92.

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit beta-2 isoform X2

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05181 GABRB; gamma-aminobutyric acid receptor subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919243.2 True 3140 mRNA 0.44 10 7467772 7525350
XM_026919245.2 False 1563 mRNA 0.53 9 7467772 7523914

Neighbor

gene id symbol gene type direction distance location
ccng1 ccng1,LOC107745080 coding upstream 23506 7439695 ~ 7444266 (+)
LOC113529491 LOC108275229,LOC103023804,LOC103475354 coding upstream 33542 7422869 ~ 7434230 (+)
sfxn1 LOC108275306,LOC108435595,LOC107668583,LOC107749734,LOC107594876,LOC107594919 coding upstream 49244 7401497 ~ 7418528 (+)
LOC113529540 cfap69 coding upstream 67347 7382078 ~ 7400425 (+)
LOC113529730 herpud2,LOC108275212,LOC105897640,LOC107686057 coding upstream 203076 7253320 ~ 7264696 (+)
atp10b atp10b coding downstream 10985 7536335 ~ 7574229 (+)
trnaa-agc_3 NA coding downstream 83691 7609041 ~ 7609113 (+)
trnaa-agc_4 NA coding downstream 86420 7611770 ~ 7611842 (+)
trnaa-agc_5 NA coding downstream 89155 7614505 ~ 7614577 (+)
trnaa-agc_6 NA coding downstream 94587 7619937 ~ 7620009 (+)
G144523 NA non-coding upstream 46952 7418761 ~ 7420820 (+)
G144486 NA non-coding upstream 200857 7239003 ~ 7266915 (+)
trnag-ccc_3 NA non-coding upstream 242224 7225478 ~ 7225548 (+)
LOC113530161 NA non-coding upstream 328400 7132850 ~ 7139372 (+)
G144444 NA non-coding upstream 505834 6958600 ~ 6961938 (+)
G144568 NA non-coding downstream 49758 7575108 ~ 7575491 (+)
G144661 NA non-coding downstream 50710 7576060 ~ 7576788 (+)
G144665 NA non-coding downstream 52778 7578128 ~ 7578377 (+)
G144715 NA non-coding downstream 160398 7685748 ~ 7688153 (+)
G144726 NA non-coding downstream 178731 7704081 ~ 7704763 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 1220 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 511256 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 514899 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 516350 6951072 ~ 6951422 (+)
LOC117598156 NA other upstream 668868 6796972 ~ 6798904 (+)
G145233 LOC107676291 other downstream 1316126 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 3011901 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 3029016 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 3769778 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 4070149 11595499 ~ 11597970 (+)

Expression


Co-expression Network