lamb1a (lamb1,lamb1a,LOC107662456,LOC107595246)


Basic Information

Item Value
gene id lamb1a
gene name lamb1,lamb1a,LOC107662456,LOC107595246
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17528241 ~ 17551524 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919247.2
GTATGTAGCTATGTGTATAGCCTAACATGGTTACAGTCCTAAGAACAATATGAGCAACTAATATCATCTGAATAGAGGGCTTGGTGGCAGAGCCCACACTTTAGCTTGTTCTGGTCTAGTTTAACGGCTCACTAACTCAGTCACATTTGATAACACCTGGGGGAGGGCTGAGAGCCCTGTGCGCatgagctgagagagagagagagagagagagagagagaggggacaggagaaaaaggagaaacttGGACCGAGAGGCGACACACCAGGAACACCAACATCATGATATTCCAACTCGCAGCCCTTTTGTGTTTAGGGGCGCGGTCGTTGGCCGAGCTGCCTGAGCGTGGGGACGTGTGCACGGAGGGAAGCTGCTACCCTGCCACTGGAGACCTGCTTATTGGCAGAGCCCATCAGCTCTCAGCCACCTCCACCTGTGGCCTGGAGAAAGCCGAACCTTTCTGCATCGTCAGTCACCTTCAGGAAGAGAAGAAATGCTTTGTGTGCGATTCTAGGGAGTCCTACAATGACGCCGCACATACAACCAGCCACAGTATCGAAAATGTGGTGACCACATTTGCTCCTAACCGACTTAAGACTTGGTGGCAGTCAGAAAATGGCATGGAGAATGTGACCATCCAACTGAACCTGGAAGCAGAGTTCCACTTCACCCATCTCATCATGACCTTCAAGACCTTCCGGCCAGCTGCCATGGTGATCGAGCGCTCAGCTGACTTTGGAAAGACATGGCAGGTGTACCGTTACTTTGCCTATGACTGCGAGTCCTCCTTTCCCTTGATCTCTCGGGGCCCCATGAAGAAGGTGGATGATGTCATTTGCGACTCTCGCTATTCTGATATTGAACCATCTACAGAGGGAGAGGTCATCTTTCGAGTATTGGACCCAGCATTCAGGATTGATGATCCTTACAGCCCAAGGATCCAAAATATGCTGAAGATTACTAACCTGAGAGTGAAGTTTACTAAGCTGCACACACTGGGGGACAATCTGCTGGACTCACGTATTGAGATCAAGGAGAAGTACTACTATGCCATTTATGACATGGTGGTGAGGGGTAACTGCTTCTGCTATGGCCACGCTTCTGAATGTGCTCCCATCGATGGAGCTGGAGAGGTGGTGGATGGAATGGTCCATGGCCACTGTATGTGTAACCACAACACCATGGGGCTGAACTGTGAGCTCTGTCAGGACTTCTACCATGACCTGCCCTGGAGGCCTGCAGAGGGGCGTAACACCAATGCCTGCAAAAAGTGCAACTGCAATCACCACAGTACCTCGTGCCACTTTGACATGGCTGTGTACCAGGCCTCAGGTAATGTtagtggaggagtgtgtgatgactgCCAGCACAACACTATGGGCCACCATTGCGAGCAGTGCAAGCCCTTCTTCTACCAGCATCCTGAGAGGGACATTCGTGACCCCAACATCTGCGAGGCCTGTGACTGTGATCCCATTGGTTCTCTGAATGGAGGCATCTGTGATGGGCTGACAGATGTCTCTCTCGGACTGATCGCGGGACAGTGTCGTTGTAAGCCTAACGTGGAGGGGGAGCGTTGTGACCAGTGCAAACAAGGCCATTATGGCCTTAGTGACAATCCTCTGGGATGTAAAGCTTGCACCTGTAATCCTGTGGGGACAATCCCAGGTGGAAGCCCTTGTGACACAAGTTCAGGGAACTGCTACTGTAAGCGCTTAGTTACGGGGAGAGACTGTGACCAGTGCTTGCCTCAGCACTGGGGGCTCAGCAACGACATGGACGGCTGCAGGCCATGCGACTGTGATGCTGGAGGTGCTCTCAATAACGATTGTTCTCCAGAGACAGGGTTTTGCCAGTGTCGGGAGCACATGTCAGGCAGACGCTGTGACCAAGTGGAGTCCGGTTTTTACTTCATTGCTCTGGACCATTACGTTTATGAGGCAGAAGATGCCAAGTTTGGACCTgGTGTCACAGTTGTGCAGAGACCATATCCTCAGGACCGCAATCCAACCTGGACTGGTATTGGCTTTGTGAATGTTCCAGAAGGAGCTTATCTGGAGTTCAGCATTGACAACATCCCGTTTTCCATGGAATATGACATCCTTATTCGCTATGAACCCCAGCTTCCAGAGCAGTGGGAGGAAGTACTGATGACTGTCATCAGGCCTCATGGCATCACTGCTGACAGCCGCTGTGCCAACACTATGCCAGATGATGACAACCAAATGGTGTCTCTACACCCTggctccagATATGTGGTGTTACCCAGGCCAGTGTGTTTTGAGGAGGGGTTGAACTACACAGTGCGTCTGAGTCTTCCTCGCTACTCTACCAGCAGTGACGTCCAGTCCCCATACACACTCATTGACTCAcTTGTGTTGATGCCACACTGTAAGAATCTGGATATCTTCTCTGGTTCCGGATCAGAGGGAGGTGACTTGGAGACCAACAGTGCGTGGGACACCTTCCAGCGCTACCGCTGCTTAGAGAACAGCCAGTCTGTGGTGAAGACCCCTATGCCTGACATCTGCAAGAACTACATCTTCAGTGTGTCTGCTCTACTGCATCAGGGAGCTAAAGCTTGTGCATGTGACCCTCAGGGGTCTCTTAGTACGGTGTGTGACCCAAATGGTGGCCAGTGCCAATGCCGGCCCAACGTGGTGGGCAGAAACTGTGACAGGTGTGCCCCTTCTACTTTCCTCTTTGGACCTCAGGGCTGCAGACCATGTGAGTGCAATCCACAGGGCTCAGTGCATGCATTCTGTCATGAGGCCACTGGTCAGTGTGAATGTATTCCCGGAGCGTATGGACGTCAGTGTGATCGCTGTCTCCCTGGACACTGGGGCTTCCCAACCTGCCGGCCATGTACTTGTAATGGCCATGCGGAGCAGTGTGACCCCCAAACGGGGCAGTGCTTAGACTGTAGGGACCACACCACTGGACACAGCTGTGAGAGATGTTTGCACGGTTATTACGGTGACCCTGTCCTGGGATCTGGAGACCACTGCCGCCCCTGCATGTGTCCAGATGGCCCTGGCAGCAGCCGACAGTTTGCTGGGGCATGTTATAAGAGCCATGACTCCAACCAGGTGTATTGTTTATGCAACCAGGGCTATAAAGGTGCAAGGTGTGATGAGTGTGCCCCAGGCTACTATGGAAACCCTCATGAGGCTGGTGGAGAGTGTCGTCCTTGCCAGTGCAGTAACAACATTGACATGATGGACCCAGGATCATGTGATGTGCACACAGGCGTCTGCCTCAAATGTTTGTACCACACAGAGGGTGAGACCTGCAGCCACTGCAAGCTGGGTTACTATGGTGATGCCCTTACACAGAACTGCAGACggtgtgtgtgtaaccatATGGGCACTAGGCAGGACACCTGTCCCTCTGCTGGCGAATGCCATTGTGACCAGAACAACGGGCAGTGCCAGTGCCTACCCAACGTAGTTGGACAGAACTGTGATTTTTGTGCCCCAGACACTTGGAACATGGCCAGTGGTCAGGGCTGCGAGGCCTGTGACTGCGACCCCAATCACTCATCCAGCTCTGCCTGCAATGAGATAAGTGGCCAGTGTATGTGTAAGCCTGGATTTGGAGGAAGAACATGCAGGGAGTGCAGAGAGCTGTTTTGGGGTAACCCTGAAGTCAAATGCCATGCATGTGACTGTGACCCCAGAGGAATTGCTGAGCAGCAGTGTAACAAAGCCTCgggacattgtgtgtgtgtggagggtgtgTCGGGCCCCCGCTGTGACACTTGTGCTCGGGGTTACTTTGGTGAATTCCCACACTGTGAACGCTGCCACCAGTGCTTCGCTGAATGGGATGTGATCATAGGAGACCTCACTAACCAAACGCACAGACTGGTGCAGAAAGTTAACGCCATTAAATCCAATGGCATCTCGGGGCCCTACCAGGACACCATCAACAACGTGGAGAAGAGTGCCAATTCCATCCGTGAGCTTCTGGCCCAGAACCCCGCCACTCAGCCGCTCACTGAGATCCAGAGCCTGGTGGAGCAAGCTACaTCCATGATGGCTGAAATGAATGAGAAGCTGAATCAGACAGAGGAGCTCTTGTCTCAGATCTCTGACAACAGCACTGACTCAAAGCTGGAAACACTCAGTGAAGAAGCTCAGAAACTGCAGCGCACTGTAAAAGACCTGCAAGACCAAGTTGAGTTTATCAAGAATTCAGATGTGCGAGGAGCATTAGACAGTATGAGGAAATACATGCAGGAGTCTGAAGCAGCAGAGGCTCGCGTGAATGCCTCCATTAGTGATCCCGAGAGCCTGGTGGAGCAGTCAGCCTCACTGCGCAATTACACAGAGTCCATGATGAATGAGACTAAAGAGGAGTTTCAGAAGAAGCAAGATGAGCATACCAAGGCACTGGACAATCTGGCTGGCCAGCTTGAGACCCTGGACCTGTCTGAACTCAGTGAGAAGACTTGTGGCAGCCGTGCTGGCTCTGAGGCCTGTGCTGACTCTCCGTGTGGAGGTCTGGGCTGTGTGGATGCtgaaggaaacaggaagtgtgggGGAGAGGGATGTAATGGTCTCACCACATTGGCCCATAATGCCTGGCAGAAAGCCAAGAACTTTGACCAGGATATTGTCAGTGCCATGGAGGAGGTGGACAAACTTTCCAAGATGGTGTCAGAAGCAAAAGTAAAAGCAGATGAGGCCAAGCTGAATGCTCAAGAAGTGCTGCAGAAGACCAATAGGACCAAGCAGCGTGTGGATGACAGCAACGAGGAGCTGCGCAGGCTCATCAGACAGATCCGAGACTTCCTCACCCAagaaggagcagatctggagagCATTGAGGCTGTGGCTAACGAGGTGCTGCAGATGCAGATGCCCACCACGCCGGATCAGCTGCAGAATCTGACAGCAGATATTCGGGAACGTGTGGCCAGCCTGTCTGACGTGGCAGATATCCTTAACGAGAGCGCTGCTGATATTGAGAGAGCTGAGGCCCTGCTGGAGCAGGCCCGCAAAGCCAGGAAAGAGGCATCTGATGTGAAGAGCACAGCTGAGCTGGTACAGGAAGCTCTGGACCAGGCAGAAAAAGCTCAGACAGCTGTGACTGAGGCCTTGAAGCAGGCCACTAGTGACATCAAGGGAACACAGGATCTGCTTGTATCTGTGGAGTCAGAGACGGCAGATTCAGAGTTCAAGCTGAGTAATGCTACTCAGAGGCTACTTCAGCTGGAAAAGGATGTAGCTCTTTTGAAAGAAAAAGCACTCAACACTTCTACCAGTGCtgaaatgacagagagagacacagacagtgtCAGTGAGCTGGCAGAACAGATCAAAAAGgatctGGACACAGAGCTGAAGGATAAATATGGTACTGTGGAGGAGCTCATCACTCAAAAGGCTCAGGGTGTAGCAGATGCTAAGAAAAGAGCTGAGATGCTTCAACAGGAAGCcaaagagctgctgctgcaAGCTAGTGACAAACTACAACTTCTCAAAGATTTGGAAAAATCCTACGATGAAAACCAGAAGACGCTGGAAGATAAAGCCAACCAGCTGATGGATCTAGAAAAGGCTGTGAAAGAGTTACTTCAAGAAATTAGCCAGAAAGCCACCTTATACAGCACCTGTCTGTTTTAACAACAAAGCCATTAGGAGTAAGACACTGACAATCATTGATAAATCAAAGAAAGGTATACCAAGGTCTTGGTTAAGGAAAGTGGAATGTACTGTGGAATTTAAAATGACTATATactaaaaagtaaatgaatgaatgtgaagtTTGACCTGTTTGGCCATGTGACTGCAAAGGTCTCTGCCAATAAACAATGATTTTTAAACAACAGAATAgatgcgacttttttttttaatttttttttttatagatttttgtaCCAAATTGTGAATGAACATAAACCAAATAAACCTCTCATGCAAGCAA

Function

symbol description
lamb1a Predicted to enable integrin binding activity. Predicted to be an extracellular matrix structural constituent. Acts upstream of or within several processes, including animal organ development; detection of light stimulus involved in visual perception; and fin regeneration. Predicted to be located in membrane. Predicted to be part of laminin complex. Is expressed in several structures, including digestive system; fin; nervous system; optic cup; and pectoral fin bud. Used to study coloboma. Human ortholog(s) of this gene implicated in autistic disorder and lissencephaly 5. Orthologous to human LAMB1 (laminin subunit beta 1).
lamb1 An extracellular matrix structural constituent. Involved in several processes, including endodermal cell differentiation; neurogenesis; and substrate adhesion-dependent cell spreading. Located in basement membrane and extracellular space. Part of laminin complex. Implicated in autistic disorder and lissencephaly 5.

NR:

description
PREDICTED: laminin subunit beta-1

GO:

id name namespace
GO:1902017 regulation of cilium assembly biological_process
GO:0007517 muscle organ development biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0007634 optokinetic behavior biological_process

KEGG:

id description
K05636 LAMB1; laminin, beta 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919247.2 True 5932 mRNA 0.51 33 17528241 17551524

Neighbor

gene id symbol gene type direction distance location
lamb4 lamb4 coding upstream 2460 17507860 ~ 17525781 (+)
LOC113529626 LOC108275292,LOC108436907 coding upstream 23345 17499317 ~ 17504896 (+)
ubl7a ubl7a,ubl7,LOC108274434,LOC108436908,LOC107703185 coding upstream 31780 17490835 ~ 17496461 (+)
LOC113529627 NA coding upstream 38878 17481462 ~ 17489363 (+)
LOC113529594 LOC108275015 coding upstream 54328 17468920 ~ 17473913 (+)
si:dkey-42p14.3 LOC108274539 coding downstream 10663 17562187 ~ 17564164 (+)
znf800a znf800 coding downstream 25184 17576708 ~ 17594730 (+)
grm8b grm8,grm8b,LOC107659486,LOC107698172,LOC107598887 coding downstream 45549 17597073 ~ 17723081 (+)
pot1 pot1 coding downstream 208794 17760318 ~ 17803798 (+)
gpr37a gpr37 coding downstream 254601 17806125 ~ 17811964 (+)
G150268 NA non-coding upstream 71106 17456920 ~ 17457135 (+)
G150265 NA non-coding upstream 81781 17446249 ~ 17446460 (+)
G150261 LOC108275011 non-coding upstream 93864 17430143 ~ 17434377 (+)
G150152 sqrdl non-coding upstream 272904 17253667 ~ 17255337 (+)
G150148 NA non-coding upstream 291295 17236641 ~ 17236946 (+)
G150407 NA non-coding downstream 151030 17702554 ~ 17702758 (+)
G150590 LOC108274445 non-coding downstream 281242 17832766 ~ 17840449 (+)
G150592 NA non-coding downstream 360113 17911637 ~ 17912583 (+)
G150609 NA non-coding downstream 363101 17914625 ~ 17915242 (+)
LOC117598020 NA non-coding downstream 579322 18130846 ~ 18139145 (+)
LOC113529564 ano9,LOC108442698 other upstream 1705650 15807990 ~ 15822591 (+)
svip svip other upstream 1803150 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 1875557 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 3698910 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 3751370 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 282713 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 631030 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 1123486 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 1170071 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 1196303 18747827 ~ 18796259 (+)

Expression


Co-expression Network