LOC113529796 (LOC108275431,LOC108433634,LOC108274563)


Basic Information

Item Value
gene id LOC113529796
gene name LOC108275431,LOC108433634,LOC108274563
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16400842 ~ 16421690 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919260.2
AGACTGAGACACTCTGTAGTCTTGTGAGGCCAGTGGTGTGCTGTGAAGATGCAGTGTGAGTGCTGGGGAGTGCAGGCTGACTCTAGGTGGACCCGCAGTCACTCTGACCAATCCGCTGGAGCTCTTTCAGCACCGGGGCTTGTTATGAAGCCGGAGCGGGGCATTAGCTCACACGGCAGCACCGAGCCGCTCTCTAAACCCGGGATTTCTGCGCACTCAAAATGCCTTTTAGAGCTTCACAAAAGATGCAAACACTTTTAACGCAgcattttttattagtattattactgGGTTGcgtttttatttctgtccaaGCGAAGGTGTCGTCTGTGTCGTGTCCCAGCGGACAGTTCGCGTTTAAAAACCGCTGCGTCTTGTGCCATCCCACCTGCGCCGAGTGTGAGGGCCATGAACTCTTCCAGTGTACCGCCTGTGATTCGGatgaggatgggagGGAGCGCTTCCTGTACCAGGGCCACTGCAGAGCTCACTGCCCGCGGGAGTTCTACCCTGACCGAGAGCAGTACACCTGCCTGCCCTGCATTGCCAACTGTGAGATCTGTGTGGATGGCAACATCTGTGCCAAGTGCAGGGAAGGATATAAAGTCCAGAGTGGGCTCTGTCTGCCAGTGCCCTGTGGTGTGGGTCAGGTCCAGGATCCAGACTCAGGAGAATGCATTGACTGTGAGACTGGCTGTAAGACCTGCTCAGCTGATGACCCAGAGTACTGTAACAGCTGCACAGAAGGCTACTTTCTGTACAGGCACCAGTGTCGCCAGCACTGCCCCCAGAGGAGCTACGAGGAGCCAAGTAGGGGTGTGTGTCTCAGCTGCCCAGAGTCCTGCTTAGACTGCAGGAGTGAGACGCTCTGTCTGACCTGTCAGCCGGTCCACTTTCTCCACAATGGTgcctgtgtgaatgagtgtccCCAGGACACGTTTGGAGATGCCAGAGGATGGCGCTGCCAGCCCTGTCATGCCTCATGTCTAACCTGCCATGGCCCAGGAGCTAGAGACTGTGACAGGTGTAATGGCTGGAACCATCCCATTTATGGGACGTGTCCCGACATTACCTGCCCTGAGGGCCAGTATTTTGACAGTGGGGCTCATGACTGCCGTTATTGCGATGTGTCATGCAGGGCTTGCTATGGTCCAACCGCTCAAAACTGCAACACCTGTGCTACTGGGTACATGTTGGAGCAGCAGGAGGCAGTGTGTGTCCAGCACTGTCCATTAGGTTTCTATGGGAACAGCTCCAGTCAGCAGTGTGAGAGGTGTTCGACTAACTGTGAGGCATGTGAAAGTGGAGACCAGTGTTTAAGCTGTCAGAGTGGCTCTTATCAGCTCTTTCTGTTCCAGGGCAGCTGCTGGTCAGAGTGTCCAGATGGTTATTTTGAGACAGAAGATGGGAAGTGTGAGCCTTGTGATGACATCTGTATGACCTGTGATGGGAGAAGAACTCAGTGTCTTGCATGTAGAGATGGTCTTTTCCTGGAAAACGGCATGTGCAGAGATAACTGCTCAGTGAGGACCtatgctgctgaggatggcacGTGCAGACGCTGTGGCCCTCACTGTGACACCTGCACTGACACCAGCGCATGCACCAGATGTACTTTTCTTTATCTGCTTTTGAATGGCATGTGTAAAGCCAGCTGTCCAGAGGGTTATTTTGAGGACTTGgaccagggtgtgtgtgtgcagtgccaTGAGTCATGTGCTACATGCTCTGGGCCTCTCTCAGATGACTGTGAGAGCTGCTCCACTCTAGCCCCAAAGCTGTATGAAGGCACATGTTCAGAGGAGTGCCCCGCTAGCACCTACTACCAGTCTGCCAGCATGGAATGTCAGGAATGCCACCAGACATGTGCATTGTGTATGGGCCCAGAGCCCACCCAGTGCACTCAGTGTGTTAAAGGACTAGCCCTGGACCCCAACACCATGATGTGTGGCGTGACCGGAGACTCAGACTGCCCACCCAGAACATTCCTCCATGCCAACCAGTTCACATGCCAGGCATGCCATCGTCACTGCCAGTCCTGTGAGGGCCCTGGGCCTACAGATTGCCAGACCTGTGCCCTGCCCCGATATCTCCATAACAGCTCTTGTGTGAACGAGTGTCCGGTTGGCACATACAGTGCCCACGAGGAAGCTGATGGCCTTGAGCTGGGGTTCTGTATGCCATGCGATCATGTGTGTGCCACATGCTCTGGAGCATCTCCTAAAGACTGTCTGAGCTGCTCTCCTGGTTACTTGCACCTGCTCTCACATCTGTGTGTCCGCCATTGTCCCACTGGATACTACAGTACAGGCCACCACTGTGAGAAGTGTCATGTGTCCTGTGAGATGTGCTCGGGCCCGGGACCGGATGCCTGCATAGTGTGTGTCCCACCTCTGCTGGAGCTTCTGGGCACCAgggtgtgtgtggagcagtgcCCTCCCCGTTTCTACCAAAGCGCACACGCTTGCTGGCAGTGTCACACTAGCTGCAAGACCTGCACTGATAACACACCTCAGGGCTGTCTGACGTGTGACTGGGGCAGTATCTTACAGGAAGGGGTGTGTTACCCTCGCTGTGAAGAAGGCCACTACTACTCTCAAAATGAGGTGTGTGAGGCCTGTGATGAATCCTGTAAACACTGCTCTGGGCCTGGCCCCGAGAGCTGTGTGACGTGCCACACAGGTTTTGGACTACATGCAGTAACCCGGAGCTGTGTGCGTTGCTGCCAGCCTAATGAACCAGCCAAGAACTGCTGCCTCTGTCACTCGGCTTCAGCTTTGTGTTTGGaggctccagtgtcagcacataACCAGGCTGAGGACGATGAGGTGAATCTGAGGTCTCGTGTATACCAGCACACATCTGCCGCCCTGCCTGCAGCGCTGATCTTGGCTGTAGTCCTTGCGCTGGGCATCTTCGCATTGGCACAGGCCCGTGCCAGGAAGAGGCTGTGCTGGAGGCAGAGTTATGAGAGGCTGAGCGGGACAGCGGGTGCCAGGCCCGATCCACGCCCCATGCCCCATGGAGTACCCGAGCCCGAGGACAGCGGAGATGATGCAGACGTTGTGTACACAAGTCGAGATGGATCCATCTATCGCCGCTATGGATTCATACACAAACCTGAacctgaggaagaggaggtggATGAAGCCAATGagaacacactcctcaaccaaGCATAAAGAGAGCAAAGGGCATGCTATTTTACCCCTCGGGATTGAAGTCTGGATAGTTCCAAATTTTATATTGTAATGGtttactttttatgttttttcaatGAAATAAAGGTTAACATGCAACATACATGTTCTctcattgtaaaatattttatatgtaagtAACACCTATAACACACCAGTTTTGTGTTTGAGAATGAATGGTTACTTTGTAGAATGTAATAAATTTGATTAAGTAAATAAGGAGTTGTcagtgaaatattaaatttgaTATCTGTAGTATATCATctgtgaaaatgtacaaatagaaaaatacaaaattccTTGTAACTCCAGTTTCATGCCTTCTAGCAATTGTTCTGTCTTCCTTAGAAATAACGTGCAAATTTATCAAGTGGCATGTTCCATTCTGTAAATACAGTGTAGCTGTATTCAGTGGAATTGTTTATTGAAGTGCCAGTTCATACTGTAATGAATAATTTGTAATGTTCCATTTGTGTAAATACAACATGTGATTTAGATAAAATGAACTTTTAAGTC

Function

NR:

description
PREDICTED: proprotein convertase subtilisin/kexin type 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919260.2 True 3716 mRNA 0.51 16 16400842 16421690

Neighbor

gene id symbol gene type direction distance location
klf13 znf467,klf13,znf746,LOC108274922,LOC107598847,LOC107550220 coding upstream 89783 16296593 ~ 16311059 (+)
rab8b rab8b,LOC108433638,LOC107598845,LOC107550224,LOC107752325,LOC107659505 coding upstream 149767 16242248 ~ 16251075 (+)
dnaja dnaja4,LOC107550212,LOC107698158,LOC107752324,LOC107598844,LOC107659503,LOC107715738 coding upstream 165461 16231335 ~ 16235381 (+)
idh3a idh3a,LOC107757767,LOC107659502 coding upstream 181208 16209778 ~ 16219634 (+)
lrrc61 lrrc61,LOC107752319,LOC107598843 coding upstream 194392 16202775 ~ 16206450 (+)
gcnt3 NA coding downstream 933 16422623 ~ 16424388 (+)
foxb1a foxb1,LOC103353681 coding downstream 76834 16498524 ~ 16500108 (+)
tln2b tln2,LOC108433629,LOC107659514,LOC107703225,LOC107739102 coding downstream 474020 16895710 ~ 17011850 (+)
tpm1 tpm1,LOC106573503,LOC107659515,LOC107739081,LOC107712528,LOC106946143,LOC103141214,LOC107589334 coding downstream 606387 17028077 ~ 17042478 (+)
lactb lactb coding downstream 624311 17046001 ~ 17052211 (+)
LOC117597940 NA non-coding upstream 58879 16338590 ~ 16341963 (+)
G149574 NA non-coding upstream 72303 16328256 ~ 16328539 (+)
G149552 NA non-coding upstream 145528 16254684 ~ 16255314 (+)
G149428 NA non-coding upstream 372823 16027607 ~ 16028019 (+)
G149427 NA non-coding upstream 374330 16024844 ~ 16026512 (+)
G149722 NA non-coding downstream 18016 16439706 ~ 16440054 (+)
G149723 NA non-coding downstream 24349 16446039 ~ 16449140 (+)
LOC117597920 NA non-coding downstream 38690 16460380 ~ 16474228 (+)
G149729 NA non-coding downstream 118909 16540599 ~ 16573872 (+)
G150148 NA non-coding downstream 814951 17236641 ~ 17236946 (+)
LOC113529564 ano9,LOC108442698 other upstream 578251 15807990 ~ 15822591 (+)
svip svip other upstream 675751 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 748158 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2571511 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2623971 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1412547 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 1760864 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2253320 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2299905 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2326137 18747827 ~ 18796259 (+)

Expression


Co-expression Network