si:ch211-106e7.2


Basic Information

Item Value
gene id si:ch211-106e7.2
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18276911 ~ 18296702 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919263.2
ACAAGCACTGTAAAACTGCATGAAAGAGTGTGCTGGGACTGAGCCCGGGCTTTGTTGCGTGGGTAATAAAGTCTATTTTTTGGCATCAAACCCCTGAGACTTTGAGAGATATTTTGCAGAAAAGATTCTACCACACCGTCAATCtgaagaagcagcagaagaaatATTAGTACAGGAGAAAGTGCTGTGAATGAAGTAATGAAGTGCCCGTTTTAAGCTGTGAGAGGCAGCAGCACTCCATAGTACCATTTAGCCTGCTgataggaggaggaggaggaggcgaagaagaagaagaggcagcagcagaagaagaagaaaaaaatctgttatgTTGTCCAAACTAGCGAAAACTGCGAAACATGAATTTCTGAAGGTTTTCTCTTCCAAGCTTGCATCAACACATCCTTTTGAGAATGCAAACTAGTTTATAGTTCCTAAACAATGGAAAAGCTTGGTGGCTCTGGAGATGGCACATCCAATCATCTAAGCCAAACATCTAATAACATAACTATACCTCTGGAGACCATTCTAAAGGACAAGGAAATCCTTTCTTATGAAGGACCAAGAGCATTTGAAAGTGACTGGAAACTATCATCACCAAGTCTGCAAACCAGCAATGGCCAGATTTTGGCACATCAACATAATAACGAATCTTGCATAAGAAAATCTATGGTGTCAATTCATAGACAGACTGGACAGAATAGAAATCATGGTTGTACAGCAGTGCTCCCTAAAGAAAACTCTCCTCAGCATGAATTGAAACATCTCTGTTCAAATGATAGACCACCAGAAACATCAGCTTGGAAACTCTTGCTTCAAAAATGCCCAATTCAGTTAAGTTCTTCATCCTTCAGACACCAAAATGCATCTTCTGCCTCAACGACCACAAACATATCACAACAGTCTATGCCACATATGATTGTTCTGAATACTAATAATCTCAGTGGAAGCTGGAAGAATAATCAATACAGTCAGCACCAGCATGTGAAGATTGTTAATAATTTACCTAAGGACTCGATCTGTCAGGGATTGTTGACTGATGTTGGAcgttgtggttttattttagcaCAGTCTCAACCGGTCAAACTTTGTCAACAAAATGCTTGTATGCCTAAAGATAGCTATCAGCAGAGGTATGCGCCTCAGAAAGCTATTGCTGTTGTTACACCATTGACTCAGCAGGTAGTTGCAGGTGTTACATTTTCAAAGACCCTGACCAAAGTGAAGGAGGGAGGCCATGAAACAAGATATCTACCAAATAAGAATAACCATCACCCTTACATTCCACATACCTTACAGTCAACAACTAATGAAAGTGGTACAAAAACTTTGTATGATAATATATCACAAACAAAGGAAATGCCATCAAAATCAGTACTAGCCACTGGATTTTCTCACTGTGTAAAGAATAATGGCCCTGCTGAGAATAATAAACTTCCTGGTCAGAGTGAAAGATTGTCCTCAGTCCCTGTTAAtagtgtgagtatagagagaaAAGAAGTGGTACAGCCGTATCTCACTGACAATAACTGTAGTGCTAAATTTCTCAGTGAAGATGATGCTACGGTGATGGGCAGAAATTCTGAAGGCACGGAAACTAGAATGGATGCTAGAATGCATAAGTTGTCTACCATACCTGTAAATGAGTGGTCTCTTCAGAGATTGCAAACCTTAGTGACTGACTTAGAGCAGATGCAAAAAAGGCAGCAGAAAGACATACCTTTTTTTGACCTTTCCAGCAAGATTTTAAAATTGTACTGGAATGGAGATTATCAAAAATTATGCAATGCAGCAAAGTCAAGCAtttatatcaatatcatgaaaGAAGTCAGACTTCACTGCGGAACAGAAAATTCTGTAATACTCCAGGGAGTTTcaagagagagactgaatgaAATTGCATCAAGCTTTCACATTTTAGAACATGGCATTGCACCCCCCAAGATGGTGTACAAATCATCCTGGTTGAATCTCAGTGAGAAACACTATGATATGGACAAGGAACATGATTGTCTGTCATCCTTAATGACTTtgcactacaaaacaaaaattgctGACAAGGACGTGCCAATGAAAGAGATGGAAAACAGGCAGGAGCCTACAGATGAGAAGCTAAAGGCATCTAATAAGGCACTAAGTgaaggagagaaacagagcaaaTCATTACCACCTGAGCATCAAAACAACTCAAGTGTTAAAGGTGACAAAATGGTAAGAAAAGAGCCAGTGGTCATGGatgctgaaaataaatgttctgtcagagagacagaaggacaaGATAGTATGACTGTGAATGTGATAAAGAAAAGAGTACAATcagagaaacaaaataaaacaaatggtGAAAATGAGGCACCTTTGCTACTGTCCTCAAGTACACAATCATTAGATGTGAGTGACAGCTGTATAAAACCAGGGAATTTGTTCAAACTCCCCACCACAGACGTGACTCCTAGGTTGGACAAAAATGGTATTACAGACTGCATTTCTGTTGAGATGAGCATCCTTCCACCAGAGAAAGCTAGAAGATTGTTTGCTGGGGAGCCAGATGAAGAGGTGGATAACAGGCAAAAAGAAGATGAACAAATTTTGACAGACAGCAGGGGTCAAGTCACTGTGGAATTAtttgaccaggataaaaaaCACATGGCCActgaaaataaatcagaagAGGGGAGCAATAGAATTAAAATCAATTGGCAATTGGAGAACTACTGTTGTCTCGCTAAATGGTTCCATGTTTTGGGCTATAGAAATGGAGGGCTTTGCAAGTGTGAGAAAAAAGCTGAAGTGAGTCGTCATGCTAACACCTCAGGCAAAGGTGTGAAGGAGGTAAATGCAGATAAGCTCAGGCATCCTTTCGAGAAAGCTTCGAAGCTCACTGATACTGACATTTGTGTGCTGAGAGATAACAGACAGGCAAAAAACAGACTTGGATACAGAAGCATGACTGGAAAAAATTCAGTTACCTCACccattgatgatgatgatgccagCATAGATGAGATTGAGATTGTGGATGTCGTCACAAACTATGAAGATGTACTTAAAATGGCAAATGCAATGTCAGAGCAGATGGAAATGCCACTTATAGCACGTACTGCACGTGAGTCCACATCAGGCAGGAAACACTGCAGAGctcacaaaaaaatcacaacgCCAAAGTTCAAGACAGGAGATACACTAATAAACCTTGCATTATTTGGCACCTCTCACAtgagacaaaagaaaaatatttctggGTTGATGTCATCGGATAAGGTGCACCTTCCCCCGGAAACAATTAATGTAAGAGTAGGTTCTGGTTGGGATGAGTACCCTAACAGTACTAAAAGCCAGACTCCTAAACAGCAAGTTTGGAATTCTTGGAAGAAGACCTATGTGCCATCAAAGATGTCTACTAACAAAAGGTCAAAGATGCGGAAAAGTGCAAAAGCAGCAGAATCAAAAAATGATGCTGCAGATAACTCTGTGATAAAAACAACAGCCTTTGATCTGATTACAACTTTGCTGTCACATGAAGAAGATGCACAAACACATCAGTCTGaagcaaaatatgaaaatacatcGTCTTTGGCATCAGctgacaaacagaaaaatacagacagagatcaatccaagaaaaaaaacaggaaaaaaatcagttctACCAGAAAGGATAAAATAAGGAAGCTGAAACTAAACAAAATGTTGGCATCATTTAATCTCAACAAGAGATGGAATTACACAAATAATGGAAGTAAACTAAGGAAGTCCTCCTTTGATCAGGCTCAGTCTATTaatacaagtaaaaataaattaaacacaggtTTAGCCTTAAATTTCGGAGTTCTGCCAGAGTCTTTCATCATACCAGACGGTAGTTCCTCCATGGAAGCCAAACAGTCTGCAAGTGCAGATAGTGGATCCAAAGTTAAAACTGTGATTCAGACCAAAAGGACATGGGGCATGTCAgGTGCTTGGTGTGACAGCCCCAGGAAGAAACAGTGCCTCAAATCTACCCCTACCCAACCAAACACATCTGGGCCCAGCACATTCCAAGAATTCAAGaagaaatatgaagaaaaaaagcagagaatTCCTAcctaattttctttaaaactatatataaaaataagacaTCAATGATgctataataaaaacattttggttaTGCTTCTGTACATAGTATGtgtagttaattaattaactaaacaGAGCTGAGCCTTTCAATTtatactggaaaataatcacttaaAATAGTAATGCAGCCGAGTGAGAAATGTGACCTCATTGAAACACAGGGTTTATGCAATATTTGTTTGAAATGCAGACACTATTATATCTACTGACCATAATGCTGCTTGAAAATGTCAAATAGTATGTTTTTGCATTAATGCTTGTTTAAACCCCTGTTTACagttatttcttgttttttttttcattatgtatgtgaaatgttattttttaata
>XM_026919266.2
ACAAGCACTGTAAAACTGCATGAAAGAGTGTGCTGGGACTGAGCCCGGGCTTTGTTGCGTGGGTAATAAAGTCTATTTTTTGGCATCAAACCCCTGAGACTTTGAGAGATATTTTGCAGAAAAGATTCTACCACACCGTCAATCtgaagaagcagcagaagaaatATTAGTACAGGAGAAAGTGCTGTGAATGAAGTAATGAAGTGCCCGTTTTAAGCTGTGAGAGGCAGCAGCACTCCATAGTACCATTTAGCCTGCTgataggaggaggaggaggaggcgaagaagaagaagaggcagcagcagaagaagaagaaaaaaatctgttatgTTGTCCAAACTAGCGAAAACTGCGAAACATGAATTTCTGAAGGTTTTCTCTTCCAAGCTTGCATCAACACATCCTTTTGAGAATGCAAACTAGTTTATAGTTCCTAAACAATGGAAAAGCTTGGTGGCTCTGGAGATGGCACATCCAATCATCTAAGCCAAACATCTAATAACATAACTATACCTCTGGAGACCATTCTAAAGGACAAGGAAATCCTTTCTTATGAAGGACCAAGAGCATTTGAAAGTGACTGGAAACTATCATCACCAAGTCTGCAAACCAGCAATGGCCAGATTTTGGCACATCAACATAATAACGAATCTTGCATAAGAAAATCTATGGTGTCAATTCATAGACAGACTGGACAGAATAGAAATCATGGTTGTACAGCAGTGCTCCCTAAAGAAAACTCTCCTCAGCATGAATTGAAACATCTCTGTTCAAATGATAGACCACCAGAAACATCAGCTTGGAAACTCTTGCTTCAAAAATGCCCAATTCAGTTAAGTTCTTCATCCTTCAGACACCAAAATGCATCTTCTGCCTCAACGACCACAAACATATCACAACAGTCTATGCCACATATGATTGTTCTGAATACTAATAATCTCAGTGGAAGCTGGAAGAATAATCAATACAGTCAGCACCAGCATGTGAAGATTGTTAATAATTTACCTAAGGACTCGATCTGTCAGGGATTGTTGACTGATGTTGGAcgttgtggttttattttagcaCAGTCTCAACCGGTCAAACTTTGTCAACAAAATGCTTGTATGCCTAAAGATAGCTATCAGCAGAGGTATGCGCCTCAGAAAGCTATTGCTGTTGTTACACCATTGACTCAGCAGGTAGTTGCAGGTGTTACATTTTCAAAGACCCTGACCAAAGTGAAGGAGGGAGGCCATGAAACAAGATATCTACCAAATAAGAATAACCATCACCCTTACATTCCACATACCTTACAGTCAACAACTAATGAAAGTGGTACAAAAACTTTGTATGATAATATATCACAAACAAAGGAAATGCCATCAAAATCAGTACTAGCCACTGGATTTTCTCACTGTGTAAAGAATAATGGCCCTGCTGAGAATAATAAACTTCCTGGTCAGAGTGAAAGATTGTCCTCAGTCCCTGTTAAtagtgtgagtatagagagaaAAGAAGTGGTACAGCCGTATCTCACTGACAATAACTGTAGTGCTAAATTTCTCAGTGAAGATGATGCTACGGTGATGGGCAGAAATTCTGAAGGCACGGAAACTAGAATGGATGCTAGAATGCATAAGTTGTCTACCATACCTGTAAATGAGTGGTCTCTTCAGAGATTGCAAACCTTAGTGACTGACTTAGAGCAGATGCAAAAAAGGCAGCAGAAAGACATACCTTTTTTTGACCTTTCCAGCAAGATTTTAAAATTGTACTGGAATGGAGATTATCAAAAATTATGCAATGCAGCAAAGTCAAGCAtttatatcaatatcatgaaaGAAGTCAGACTTCACTGCGGAACAGAAAATTCTGTAATACTCCAGGGAGTTTcaagagagagactgaatgaAATTGCATCAAGCTTTCACATTTTAGAACATGGCATTGCACCCCCCAAGATGGTGTACAAATCATCCTGGTTGAATCTCAGTGAGAAACACTATGATATGGACAAGGAACATGATTGTCTGTCATCCTTAATGACTTtgcactacaaaacaaaaattgctGACAAGGACGTGCCAATGAAAGAGATGGAAAACAGGCAGGAGCCTACAGATGAGAAGCTAAAGGCATCTAATAAGGCACTAAGTgaaggagagaaacagagcaaaTCATTACCACCTGAGCATCAAAACAACTCAAGTGTTAAAGGTGACAAAATGGTAAGAAAAGAGCCAGTGGTCATGGatgctgaaaataaatgttctgtcagagagacagaaggacaaGATAGTATGACTGTGAATGTGATAAAGAAAAGAGTACAATcagagaaacaaaataaaacaaatggtGAAAATGAGGCACCTTTGCTACTGTCCTCAAGTACACAATCATTAGATGTGAGTGACAGCTGTATAAAACCAGGGAATTTGTTCAAACTCCCCACCACAGACGTGACTCCTAGGTTGGACAAAAATGGTATTACAGACTGCATTTCTGTTGAGATGAGCATCCTTCCACCAGAGAAAGCTAGAAGATTGTTTGCTGGGGAGCCAGATGAAGAGGTGGATAACAGGCAAAAAGAAGATGAACAAATTTTGACAGACAGCAGGGGTCAAGTCACTGTGGAATTAtttgaccaggataaaaaaCACATGGCCActgaaaataaatcagaagAGGGGAGCAATAGAATTAAAATCAATTGGCAATTGGAGAACTACTGTTGTCTCGCTAAATGGTTCCATGTTTTGGGCTATAGAAATGGAGGGCTTTGCAAGTGTGAGAAAAAAGCTGAAGTGAGTCGTCATGCTAACACCTCAGGCAAAGGTGTGAAGGAGGTAAATGCAGATAAGCTCAGGCATCCTTTCGAGAAAGCTTCGAAGCTCACTGATACTGACATTTGTGTGCTGAGAGATAACAGACAGGCAAAAAACAGACTTGGATACAGAAGCATGACTGGAAAAAATTCAGTTACCTCACccattgatgatgatgatgccagCATAGATGAGATTGAGATTGTGGATGTCGTCACAAACTATGAAGATGTACTTAAAATGGCAAATGCAATGTCAGAGCAGATGGAAATGCCACTTATAGCACGTACTGCACGTGAGTCCACATCAGGCAGGAAACACTGCAGAGctcacaaaaaaatcacaacgCCAAAGTTCAAGACAGGAGATACACTAATAAACCTTGCATTATTTGGCACCTCTCACAtgagacaaaagaaaaatatttctggGTTGATGTCATCGGATAAGGTGCACCTTCCCCCGGAAACAATTAATGTAAGAGTAGGTTCTGGTTGGGATGAGTACCCTAACAGTACTAAAAGCCAGACTCCTAAACAGCAAGTTTGGAATTCTTGGAAGAAGACCTATGTGCCATCAAAGATGTCTACTAACAAAAGGTCAAAGATGCGGAAAAGTGCAAAAGCAGCAGAATCAAAAAATGATGCTGCAGATAACTCTGTGATAAAAACAACAGCCTTTGATCTGATTACAACTTTGCTGTCACATGAAGAAGATGCACAAACACATCAGTCTGaagcaaaatatgaaaatacatcGTCTTTGGCATCAGctgacaaacagaaaaatacagacagagatcaatccaagaaaaaaaacaggaaaaaaatcagttctACCAGAAAGGATAAAATAAGGAAGCTGAAACTAAACAAAATGTTGGCATCATTTAATCTCAACAAGAGATGGAATTACACAAATAATGGAAGTAAACTAAGGAAGTCCTCCTTTGATCAGGCTCAGTCTATTaatacaagtaaaaataaattaaacacaggtTTAGCCTTAAATTTCGGAGTTCTGCCAGAGTCTTTCATCATACCAGACGGTAGTTCCTCCATGGAAGCCAAACAGTCTGCAAGTGCAGATAGTGGTGCTTGGTGTGACAGCCCCAGGAAGAAACAGTGCCTCAAATCTACCCCTACCCAACCAAACACATCTGGGCCCAGCACATTCCAAGAATTCAAGaagaaatatgaagaaaaaaagcagagaatTCCTAcctaattttctttaaaactatatataaaaataagacaTCAATGATgctataataaaaacattttggttaTGCTTCTGTACATAGTATGtgtagttaattaattaactaaacaGAGCTGAGCCTTTCAATTtatactggaaaataatcacttaaAATAGTAATGCAGCCGAGTGAGAAATGTGACCTCATTGAAACACAGGGTTTATGCAATATTTGTTTGAAATGCAGACACTATTATATCTACTGACCATAATGCTGCTTGAAAATGTCAAATAGTATGTTTTTGCATTAATGCTTGTTTAAACCCCTGTTTACagttatttcttgttttttttttcattatgtatgtgaaatgttattttttaatattttt

Function

NR:

description
uncharacterized protein LOC110521378 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919263.2 True 4452 mRNA 0.39 5 18276911 18296697
XM_026919266.2 False 4406 mRNA 0.39 4 18276911 18296702

Neighbor

gene id symbol gene type direction distance location
slc41a2a NA coding upstream 22141 18245570 ~ 18254770 (+)
cnot2 cnot2,LOC108275083,LOC108436929,LOC107678985,LOC107696293,LOC107752336 coding upstream 49250 18214123 ~ 18227661 (+)
slc15a5 slc15a5,LOC107598876,LOC107575796 coding upstream 96264 18171931 ~ 18180647 (+)
aass aass,LOC107698474,LOC107752301,LOC106584550,LOC107753626 coding upstream 165467 18089100 ~ 18111444 (+)
fezf1 fezf1 coding upstream 190176 18082942 ~ 18086735 (+)
amn1 amn1 coding downstream 892 18297594 ~ 18302925 (+)
LOC113529962 LOC108275334 coding downstream 9539 18306241 ~ 18317725 (+)
pkmb pk,LOC108275437,LOC108436941,LOC107716749,LOC107661438,LOC107696282,LOC107573699 coding downstream 71344 18368046 ~ 18375364 (+)
pim3 pim3,LOC108275436,LOC108436897,LOC107716739,LOC107598820,LOC107696273,LOC107573827 coding downstream 190782 18487484 ~ 18490931 (+)
brd1b LOC108436948,LOC108275266,LOC107661448 coding downstream 195043 18491745 ~ 18503991 (+)
LOC117598020 NA non-coding upstream 137766 18130846 ~ 18139145 (+)
G150609 NA non-coding upstream 361669 17914625 ~ 17915242 (+)
G150592 NA non-coding upstream 364328 17911637 ~ 17912583 (+)
G150590 LOC108274445 non-coding upstream 436462 17832766 ~ 17840449 (+)
G150407 NA non-coding upstream 574153 17702554 ~ 17702758 (+)
G150873 LOC108275329,LOC102219286,LOC107096723,LOC103150244,LOC103466419,LOC103046663 non-coding downstream 45541 18342243 ~ 18345729 (+)
G150900 NA non-coding downstream 70180 18366882 ~ 18367108 (+)
G150933 NA non-coding downstream 126856 18423558 ~ 18424220 (+)
G150932 LOC108436944 non-coding downstream 128615 18425317 ~ 18444052 (+)
G150952 NA non-coding downstream 233437 18530139 ~ 18530708 (+)
tmem17 tmem17,znf774,LOC107678976 other upstream 92878 18182554 ~ 18184033 (+)
G150589 LOC108274445 other upstream 434376 17834237 ~ 17842535 (+)
LOC113529564 ano9,LOC108442698 other upstream 2454320 15807990 ~ 15822591 (+)
svip svip other upstream 2551820 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 2624227 15563306 ~ 15652684 (+)
rfwd3 rfwd3,LOC107754982 other downstream 378308 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 424893 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 451125 18747827 ~ 18796259 (+)
faap24 faap24 other downstream 824449 19121151 ~ 19125201 (+)
G151401 NA other downstream 963922 19260624 ~ 19263893 (+)

Expression


Co-expression Network