fibina (LOC108275273)


Basic Information

Item Value
gene id fibina
gene name LOC108275273
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15640341 ~ 15642520 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919332.2
CAATGACTTGAATTTACTGAGACGTGGATTTATTGGGTAAGAACATGAATTTTTGTAGTGGGAGTAGAATGACAGCCcactatgagagagagagggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggaggctGTAACTTGAGCAGGACTATGGGAGTGAGAAGGCGCTGTGGTTCGCTGCTCTCCCACACGCCGCcatcactcactccctcactccccgCTTAGCGCGCAGCTACGAGCGGCAACGATGCTGCCTGTTTCCCAGCTGCTCGCTTTAGCCCTGCTTTCATTCCCCGTTTATAACGCGGTGTACACGGGCCCTCTACAGCCTGAGATGTCAAACGGCACCTTTCACCACTTCTTCGTTCCAGACGGCGACTACGAGGAGACCGAGGACCCGGAGAAGTGCCAGATGCTGTTTAAGTGGCTGGACCGCTCGCCGTGTTTAGCCGAGGAGGACCGGGACTCGGTGATCCGCGACGACTTCATCAGCATCAAGCAACAGGTCGAGGACGCGGCGCGAGTTCTGGAGAGTCTCGGGAGAAGTATCTCATACGATCTGGATGGAGAGGATACGTACAGCAAGTACCTGAGGAGAGAGATCGATCAAATAACTGAGGCGTTTTCTGGCGTCGAGAAATCGCTCATCGAGCTCGAGGTGAAATTCAAGCAAGGTCAGGAGTCGGAGCAGAGAGAGGAGCAGGAGTTCACTAAAACGCTGATGAACCCCATGCAGAGTGTGAGGAGCTCCCTGCAGGACACACTGGACATCTCCTCCGGCCTCAAGGACAAACACGAGCTCATCTCCCTCATCATCCGCAGCCATGGCACCAGGTTAAACCGACTTAAAAACGAGTACTTGAACATTTAGTGATCTAAGAAAACTTCTTTTATCTGGTCATTTAAGCTGCTTTAGACTTTGGGTTTGAAATattaatgtgtcattctttaaaagCTTCACTTACATAGGTACATCAGAAGATAAGGGCTGGGAGGATGTTTCTGAAGACACCTCAGGAAAACAGTGCATCATGAACTGTTGAGACTAAATTATCCTGTGCCACACACTACAGCCACACTGACTTATTGGCTTACTGAGTTATTGTCATGTAAAATGTTTACTTCCTACAAAggattgtgatttttttaaattcttaaacaCATGTCTAATTCCTAAGCCCTTAACACGACTTTATGAAACAAACCTGCCATTGTTTTGAGACACAGTTTTTGTCCGATCCACATTTcaggtgtgtttatttaaccCAAAGAGGTCagtagggattttttttccagaatgatTCAAGTCTGAGCTAAGGAGCAGAACCAGTGGTGCTCAGGAAGCTGGTGCAGAGAGAAGGTATTTCCTGTGCCATAGAGAAGTACGTGTACCTTCTCCCATTACACCACATGGAGGAATAATCAAATTGAgtaatgtaaagaaaatgaTCTGTTCCTCTCTTCCCCGACCTCAGCAGAGTCTAGACGGATTCTTCCAGTAAACGGCTCCGCAATGGGATGGTTAATTTGCTGACATAATCCAAACTATTTCACCTCCTATTTTAACCTTAACCACAGCTTCACGTTCACTCTAGACTAAACTACATAATGATGTGCATATGCCCCTGTGCCTATCCATTTTCCCATGGGAAAGGACCGAAGTCTTTCCTGTTTGGTTATTCTCAGAAATCTGGTTGAATCTAGAAGGAAAGTGAAATTGCTGACAGTGTAAATTCAGCAGGTTTGGTCTCTATTCACCGGCAGCTTAAGTTTGTCCATCTGGATGTGGTTTCTGGTTGctgaacagagaaaaaaaaagaatatgttaaataagttCATTGcatacacacttttaaaaatgtgaatcaACAGGAGGAAAAGTGACTGTCAGtatgatgtatattttttaaaaatgtgccttaagttctttggatagttaagggttcttcactTCCACTAGGGCTTCTACTTGGAGCAGTCTCTGACAGGGAAGAGATCTATGACACCTACAGTGTGGTCTAATCCTTCTGTTTCTGATTTGTTTGATAAATCAAGTCTACAAAAGAGCAGTAGTTTTTGTTGGAGTTGTAGTCATTTTAAATCCCAGATGTCATTATATTTGTTAAACATTGTCAAATATCTAAAAACTAAATAgagatttttatgtttttaca

Function

NR:

description
fin bud initiation factor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919332.2 True 2180 mRNA 0.44 1 15640341 15642520

Neighbor

gene id symbol gene type direction distance location
spi1a LOC108275191,LOC108442687 coding downstream 12886 15620299 ~ 15627455 (-)
slc2a13b slc2a13 coding downstream 63127 15567829 ~ 15577214 (-)
kif21a kif21a,LOC102199929 coding downstream 73933 15522687 ~ 15566408 (-)
cpne8 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC106561599,LOC105026415,LOC106573107 coding downstream 119879 15481038 ~ 15520462 (-)
lsm14aa lsm14aa,LOC108274970,LOC108428766 coding downstream 162029 15468722 ~ 15478312 (-)
ano3 ano3,LOC107677449,LOC107752468 coding upstream 9685 15652205 ~ 15709179 (-)
LOC113529473 gas2,LOC107728426 coding upstream 84423 15726943 ~ 15749724 (-)
slc17a6a slc17a6,slc17a6a,LOC107555703,LOC107677426,LOC107570095 coding upstream 117106 15759626 ~ 15769464 (-)
LOC113529694 LOC108274566 coding upstream 127176 15769696 ~ 15771485 (-)
ano5a ano5,LOC107728425 coding upstream 129894 15772414 ~ 15802627 (-)
G149057 NA non-coding downstream 262935 15377203 ~ 15377406 (-)
G148992 NA non-coding downstream 308909 15331207 ~ 15331432 (-)
G148919 slc25a3,LOC107569351,LOC107754323 non-coding downstream 502334 15136126 ~ 15138007 (-)
G148920 LOC108275086 non-coding downstream 507844 15130776 ~ 15132497 (-)
G148926 LOC108275086,LOC108428785,LOC106523631,LOC105938579,LOC107388471 non-coding downstream 511835 15127232 ~ 15128506 (-)
G149301 NA non-coding upstream 82731 15725251 ~ 15725901 (-)
G149305 fancf non-coding upstream 108639 15751159 ~ 15752470 (-)
G149312 NA non-coding upstream 115764 15758284 ~ 15758501 (-)
G149363 cyp11a non-coding upstream 255370 15897890 ~ 15898161 (-)
G149364 NA non-coding upstream 259920 15902440 ~ 15902642 (-)
LOC113529695 NA other downstream 411356 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 552281 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 827636 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 1804586 13825782 ~ 13835755 (-)
trnar-acg_1 NA other downstream 1849796 13790287 ~ 13790545 (-)
LOC113529470 LOC108275326 other upstream 69473 15711993 ~ 15719575 (-)
islr2 islr2,LOC107662462 other upstream 338644 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 498599 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1410833 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2562131 18204651 ~ 18214487 (-)

Expression


Co-expression Network