clpxb (clpx,LOC108275190,LOC105913134,LOC108442679)


Basic Information

Item Value
gene id clpxb
gene name clpx,LOC108275190,LOC105913134,LOC108442679
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15609440 ~ 15620419 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919335.2
AGACGAAGAAGAAACGTCAgactgtttattctgtttagtGATAGCGGAGAAAAACAAGCTTGGTCTAGTTACACCGAGCTGCTTCAGCGATTACATAACCCTGACCTCGTGCTGATGGAAACATCCGTTTAGTGAATACACTTTAAGCTTTTAAACACAGTCAAACCggcatgaaatattttataaactgcaCAGTTCATCCTTTATGATAGCGTTATTTTAGTTTAGCTTAGCGAGCCGCTGGACGGAAGCTGGCAGTGTCAGTAACCGGTTTGATGTGAACTCGGACACTCTGTTCCTTCCTCTTTTCTCCACATCTCGACTCAGAAGATGTCTTCCTGTGTATGTAGAGCTGCTGCGAGGCGACTCTTCAGTTCAgcacacacagGGTTTTCACGCTCACACATTAAGTTCTATGCTCTCAGTAGCAGAGTGATTCGTGAAGCCTGTCTACCTCCTGCAGTGCGAGTCAGATCGTTTTCAGAGAGTGCCGTGTTTTTAGCCTCAAAGGAGAACACACCAAAAGATGGCTCCAGTGATGGGGGAAAGGAGAGTGCAGCAGACAGAATTGGGAAGAGATCTACGGGTTCGGGCGGGTCAGGGAAAGGAGGACGTCAGCTACGTTGCCCCAGATGTggagacacatgcacacatgtgGAGAcgtttgtgtCATTCACACGttttgtgaaatgtgaaaaatgtcatcacTTCTTTGTGGTGCTTTCTGAAAGCGATTCTAAGATGGGTCTGAATAAGGAGGCAGAATCTGGTGCCGAAGCTGTTAAACTGGCATTTGCTCAGAAACCTCCCCCACCCCCTAAAAAGATCTATGCCTACCTCGATAACTATGTTGTTGGCCAGTCATATGCAAAGAAGGTGCTGTCGGTTGCAGTGTATAACCATTACAAACGGATCTACAACAACCTTCCTGCATCAGGCGGACAGCAAGCGGGGACAGAGAAGCAGATCTCTCTCACTCCCCAGGagcTAGAGATCAGAAGACGGGAAGATGAATACAGATTTACAAGGCTGCTTCAGATTACTGGGATCAGCCCACATGGCAATGCTCTTGGTGCATCTGTTCAACAACGGGCCACTCAACAAGCTACCCCGGAGAAAAGGGGTGCCGAGGTGCTGGACTCTACTCACACTAACATCAAACTGGAGAAGAGTAACATTGTGCTGCTAGGCCCTACTGGATCAGGTAAAACACTTTTAGCTCAGACTCTGGCTCGGTGTTTGGATGTTCCTTTTGCCATCTGTGACTGTACCACGCTGACCCAGGCAGGCTATGTAGGTGAGGATATCGAGTCGGTCATTGCGAAGCTGCTGCAAGATGCCAACTACTCAGTGGAGAAAGCCCAGCAAGGAATAGTGTTTCTGGATGAGGTGGATAAGATTGGAAGTGTTCCAGGAATTCACCAGCTCAGAGATGTAGGAGGAGAAGGCGTCCAGCAGGGTTTGTTGAAACTCCTGGAAGGCACCATTGTGAATGTTCCAGAAAAGAACAGCAGGAAGTTGCGAGGTGAAACTGTGCAGGTGGACACAACCAACATCCTGTTTGTGGCATCAGGAGCCTTCAACGGGCTGGACCGAATCATTAGCCGCAGGAAGAATGAGAAGTACCTTGGATTTGGCTCGCCCTCTAACCTGGGGAAGGGACGccgtgcagcagcagcagctgatcTGGACAATAGCACAGGCAGTGAGCTGGATGTGGCTGCTGAGATGGAGGAGAAGGATCAGCTGCTGAGACATGTAGAGGCACGTGACCTCATTGAGTTTGGCATGATTCCTGAGTTTGTAGGTCGTCTGCCCATCGTAGTGCCTTTGCACAGCCTGGATGAGCAAACACTAGTGCGCATTCTCACAGAGCCCCGGAACGCTGTGGTGCCTCAGTACCAGGCTCTCTTCAGCATGGATAAGTGTGAGCTGAATATAACCCCAGATGCACTCAGGGCCATTGCCAGACTGGCTCTTGAGAGGAAGACTGGAGCCAGAGGTCTCCGATCCATCATGGAGAAGCTACTGTTGGAGCCAATGTTTGAGGTGCCACAGTCAGATATTGTGTCTGTGGAGCTGAATAAGGATGTGATTTTGGGCAAGACTGAACCACGCTATATCAGAGCTTCAACTAAAGAGACCACAGAGGAGGAGTATGACTGTGGCATTGAAGAAGAGAACTGGCTGAGACAGGCAGAGGTAGCCAACAACTAATAATGCAGCTGTGAAACATCTAATAATACAGCTGTGAAAATCTCTCTGGATTCTGCGTCACTGAACTTGTGAAAACAAGAAGCAACATTCTAAAGAGGACCCCAGCTTAAACCTAAAACAGAGACACTTAACAAATATCAGCTGAACAAGGAATGTACAGAAAGTGACTACACACAGGCTTTAATTACAGTCTTTGTGGATAACTTAaaatttgctaacaattttaTGTATCTAAAAAGAATTAGATTTTCTTGAGTGAGTTTTTGTGAATGTGGAAAGATTGCCTTAACTGGGATGATAAAATGCAGTTTAAGGCATAAAGCTAGTTATGTTaaatttttagtatttttggtGCATACACCAACTTGTCCTTTATTTAGTAAGAGTATTTCAGCTGTGCATAATGGTGGTGCTGGTTTCtctacctctttttttttaacagtaatgaATGTGATGCTGCTCTGTACTTATAGGTTTATCTTTTTTAGACTACCTATAATTGAATCAGAGAAACTGCTCTAGAGgactgtgattttttaaaacaatgcacAAGCCATTGCAAGAACAGCACAAGTGACCTTTTTCAAATATGCTAAATGCCCTCTTATTAACCTGCTCTTCTTGgcagatgtactgtatgtttggTTTGTACAACACTGATAATTCATCAAATCTCAGTACTACTGATGGTTTCGAAATGCAGTCTGTctacacacacttgtgtgttgAATTGAGTTCACAACAGTAATGAAACATTTTGTACTCATAACAGTGACATTAACTTTTCATATATACTTTTATTGAAATTTTTCCATTTCAGATGTCAGCAAACCACCACAAAGGCCATTAAATTTGGAAtttatatgttgttatttaaaaaatataaatataatgtgta

Function

symbol description
clpx Enables peptidase activator activity. Contributes to ATP-dependent peptidase activity. Involved in ATP metabolic process and proteolysis involved in cellular protein catabolic process. Located in cytosol; mitochondrial nucleoid; and nucleoplasm. Part of mitochondrial endopeptidase Clp complex. Implicated in erythropoietic protoporphyria.

NR:

description
PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X1

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K03544 clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919335.2 True 3115 mRNA 0.44 15 15609440 15620419

Neighbor

gene id symbol gene type direction distance location
lrrk2 lrrk2 coding upstream 3703 15577183 ~ 15605737 (+)
mphosph6 mphosph6 coding upstream 160699 15446796 ~ 15448741 (+)
snx20 snx20 coding upstream 163385 15444108 ~ 15446055 (+)
sall1b LOC108274520 coding upstream 175901 15427516 ~ 15433539 (+)
rbl2 rbl2,LOC107659865 coding upstream 187587 15406172 ~ 15421853 (+)
si:ch211-87j1.4 LOC108274534,LOC103040017,LOC108442681,LOC105913127,LOC107701590,LOC107695923,LOC107555711,LOC107723960,LOC107752489,LOC107571669 coding downstream 10636 15631055 ~ 15634990 (+)
fancf fancf coding downstream 130720 15751139 ~ 15752526 (+)
sigirr sigirr coding downstream 211760 15832179 ~ 15841507 (+)
hexa hexa coding downstream 254444 15874863 ~ 15882172 (+)
nr2e3 nr2e3,LOC105892475,LOC107595245,LOC107589312 coding downstream 267688 15888107 ~ 15890739 (+)
G149131 NA non-coding upstream 39953 15567836 ~ 15569487 (+)
G149091 cpne8,LOC108274474 non-coding upstream 125537 15483074 ~ 15483903 (+)
G149089 NA non-coding upstream 127412 15481687 ~ 15482028 (+)
G149088 NA non-coding upstream 127870 15481252 ~ 15481570 (+)
G149027 NA non-coding upstream 157536 15451576 ~ 15451904 (+)
G149248 NA non-coding downstream 90594 15711013 ~ 15711917 (+)
G149268 NA non-coding downstream 134246 15754665 ~ 15754912 (+)
G149276 NA non-coding downstream 151419 15771838 ~ 15818368 (+)
G149427 NA non-coding downstream 404425 16024844 ~ 16026512 (+)
G149428 NA non-coding downstream 407188 16027607 ~ 16028019 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 1780109 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 1832569 13761334 ~ 13776871 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other upstream 2220244 13372872 ~ 13389196 (+)
zgc:172145 LOC108275003 other upstream 2256178 13349323 ~ 13353262 (+)
G147542 NA other upstream 2692186 12916919 ~ 12917254 (+)
svip svip other downstream 100859 15721278 ~ 15725091 (+)
LOC113529564 ano9,LOC108442698 other downstream 187571 15807990 ~ 15822591 (+)
G150589 LOC108274445 other downstream 2213818 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2562135 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 3054591 18675010 ~ 18683428 (+)

Expression


Co-expression Network