tbc1d2b (tbc1d2b,LOC107698183,LOC102789207)


Basic Information

Item Value
gene id tbc1d2b
gene name tbc1d2b,LOC107698183,LOC102789207
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16141596 ~ 16165999 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919337.2
GCTTTGCTAGGGCTGTCCTTCTTCCGCACTACATTTCCCGCAAGCCTTTGCCGCACCACAAGAATGGACGACAAGTCATGTGGATGAACATACAGCCGTGCATCCGCCGAAGTGAAAAGGTCGGAGAAAGATGcgggaggaggaggatgacACCGCCGCCAATCCGGCCAGGAGCTCGCGCGTTTTCGCCGCCAAGTCTGTAGACGTGGCCGAGTACGATGGCGCGAAGGAGCACGCGCCCAAACTGTGCGGCTACCTGAACAAACTGGTAGGCAAAGGGCCTCTGAAGGGATTCAGAACGCGCTGGTTTGTCTACGACCCGAGGAAGTGTTACTTGTATTACTTCAAGACTCCTCAGGACGCTCTTCCTCTTGGCTACATCGAAATCGCCGACGCCTGTTTCACCTACGAAGTGGAGGGAGAAGAGGGTCAGTTCGAGATCCGCACCGCGGGCAAAGAGTTCCTCCTCAAGGCGCCCAACAAGCAGGTGATGCAATACTGGCTTCAGCAGCTTCAGCAGAAGCGATGGGAGTTCAGTAACACACGAGGATGTGGCAACCGAGACAGCTTGTGCTCCCCCACCCCACTCTTTCCTCACACAGGCCTGGTGGCCAAAGATGCTGATGCAATGCCCCCTGAGCTGCCTAATGAAACTATGGAGAGTGTGCGCAGTGATTTCACAGAGGAGGCAGACGCTAATGGCTTGGTTGGACTCCAGACTGCAAGGAACCCAACAACACATAATTTTTCCCTTCGAAACTGGGGCACTGAGCTAAGGAACAGTATGTCTCACTTGCGGCCCAGCCGAGGGGGAGAGAACAGACGCAGTGTGTTTTATACAGTCAGCAATGAGGAGTGGGAGATGGTGGATCCCCCTACTAAGGACACTCCAGAACAGAAACCTCCAGCTGAGAGTCAGCGCCGTGAGAGCCCTTCACACCTCCACAGACACTCCATCGGTTCAGCGTTCACGTTTGATTTCCGAGGTTCATCACGCATTAAGCGTCCGTTCCAGATGAGCTTTGCTAAATCGGGCCGCAGTGCAGAGACATCACCAGTGGAGTGTAACGGCAGTAAGGCTGCGGAGCTGCAGCTACGTCTGCAGAGCCAACAGGAGGAGTTGAGCCGCATGCAGGAGGAGCAGAACCACCTACAAGAGGAGCTCAGCAGTCAGAAGGAGCTAGTGCGTCTCCTCCAGCAGACTCTGAGGACTGCTCAGTGTGAGCGCTGGCCAGGGGAGATAGACATGGCTGGGGCATTGACTGAGCGAGATGGCCAGATCCAGGCCCTGTGTGGTCACATGGAGAGACTGGCGCTGGAGAAAGAGAGCCTGCAGCAGGAGCTGAAGAGCCTGAAGATCAAAGTGGGAGAGATTAATGATCAGTTAGGCATGCTGATGGAGACCATCCAGGCCAAAGATGAGGTCATCATGAAGCTGTCACAGCAGAGCCAGGAAGGGAGTACTGAGGCAGTAGAGTGCAGCTCTCCTTCAGCACGAGAAAAGCAAGAGCTCCACCACCTGAGGGACAGCCTTCAGGGCTACAAATCCCAGAATAATTTCCTGAACAAAGAAATCCTTGAGTTGACAGTGTTACGAAGGAATGCTGAAACTAGAGAAAAGATCCTTGAGGCAAAGTACAGTGCTCTGGAGGCCAAGCTGTGCCAGGTGGAGAGTAAGTACCTGGTGCTCCTGCAGGAGGTAAAGACTCCGGTGTGCTCCTCATCCGAGCAGGGCCCAAGCGGAGATGTCATATCTAGACTGCTGGAGGATGCTCTGCAGGTGGAGAGCTCTGACCAGCAGGAGCACATGATTCTCAAGCCCCATCCTGTCAGtGAGTACGATGTATTTGGCTTCAAAACAGTTCcagaggaggaagatgaagaagagaagCTGGTAGCCAGAGTTAGAGCTCTAGAGctcaggtctctctctctgactgaccAGGAGGTGTCTGTTGGGGTGAAGTGGGAAAACTACCTGGCTGGTATCATGAACAGGGAGATGGTGCGCTCTCCGGAGCTGAAGGCTTTAATCCGCAGTGGTGTGCCTCACGTGCATCGCTCCAAAGTCTGGAGCTGGTGTGTTAAGTTCCATGTGAAGAAGTTCCGAGAGTGCCAGAAGCCAGACTACTACGAGAGCCTGTTGTGCACAGCGAGGGACAAACCTAACCCAGCTTCTAAACAGATAGAGCTGGACCTGCTTCGCACGCTGCCCAATAACAAGCACTATGCCTCACCTTCAGCTGATGGCATCCAGAAACTCAGAAACGTGCTGCTGGCTTTCTCCTGGAGGAACCCAGACATTGGCTACTGTCAGGGACTCAACAGGCTAGCAGCCATAGCTCTTCTCTATCTGGAGCAGGAGGAGGCTTTCTGGTGTCTCATCACTATTGTGGAAGTTTTCATGCCACGAGACTATTACACCAAGACACTCCTCGGCTCACAGGTGGACCAGCGTGTGTTTAAGGACCTGATGAGTGAGAAGCTGCCGAGACTTCATGCTCATTTTGAGCAGTATAAAGTGGACTTCTCACTCATCACCTTCAACTGGTTCCTGGTGGTGTTTGTAGACAGTGTGGTCAGTGACATCCTCTTCAAGATATGGGACGCTTTTCTCTACGAAGGACCCAAGATCATTTTTCGCTTCGCCCTCGCTCTCTTCAAGTGCAAAGAGGAAGAGTTTTTGAAGTTGCAGGACCCCATGGCCATCTTTAAGTATCTTCGATACTTCACACGAACAATTCTAGATGCAAGAAAGCTGATGAACATGGCTTTTGTGGACATGAACCCATTCCCCTTAAGGCAAATCCAAAACCGTCGCACCTTTCATCTGGAAAAGGTTCGACTGGAGCTCACGGAGCTGGAAGCTATTCGCCAGACATTTTTACGTGAGAGAGAGACCTCTCAAGATGGACGCACGCTTATCAGTGATGACGAGGAGGACAACTGAATCCCTGCCAGGCAGAAATGACACATACATCTGTGTGAGACAGTGACAtaccttgtttttttctgttgcacccATCAGTTTGCTTATAGAGATACAGTGTTTGGtgcaaatatttacagtaagtgATCTCTTCACTTGCCTGCATTGTGGTCTACATGAAGCAgccattttaaatttaacaatATCTTCCCGTCCTTTTCCTTTTCAAGAGTTGTCAGTGATGGTTGATCTTTTGATATTGTTTTCTTACAGATCCCCATAAACAGTCCACACATTGAGAAGTGAGATAGTGTTTACTGAGCAAAAGTTTAACTTCAGAAAAGTTTAACTTTCATATGTCACACTGGACATGCAGTTCAAATACACCAGTGTTATCACGATCAAACTCCCATGTTTCACACTCGGGTTTATTGATTTAGCATTGACTGTCACTTGTTTACGTCTTTATATCAAGCTTATATTAGCACtgtgtattattttctgttatccatgttctttcattcatctccagtaacttttatcctggtcagcgtGGCTGTGGTTTCAGatcctatcccgggaacacagGACATGAGACGGGAATACTGTCTACTGGATAGGCTGTTCATCACAGGCcatcatgcacatacacacacacacacacacacactcttattcacacctaggggcagtttagagtAACCAgacggcatgtttttgggagatgtagactctggagaaaacccacaggAACacgggagaacatgcaaacacgTGAACACacgcgtatacacacacacacacacacagacattaatcTGTGCTCACGATTGAAATTCTTGCTTGTGAAATTCAGTATTTCAGGTTTTGAGCGTCATAAATTTTCTTGGTACTTCTATTGCTGTTTTCATTTCCTTATGAAGCACTTAAATCACTTTAAACTATGGACATTCAACTAGTTCAGGGAAGCTGAAGATGCTAAAGGCTGAACCGAGAAGTAGCGAATTCTctcctgtgtgtgcatgaagtATCTGCAGAAGCTCAGTGAAAATTCCTTTGTACAGTCGTATGATGACACTTAGCTGCTGGAAAACAATCCTTAGACAATGCATATCATTTAGTCTGTCAGAGCCGTGCTGCTTATTTTCTGCTTGAGTGACATTCCTTTGTTAGCAATCAGCTGGGTTTGGACCAGTTTGAATCCTCATCTGTCAGGATTCAGCCATATATCCAGTgctgtttgtgttgtgtattattCAACTGCCTAGTGCAGCTTTAGTTCAGGACTATTTTTTGATAATTGGCAGTTGTGGCCTTGAATTTTAATGCAGCATTGTGAATAAAAGTTTATAGAACTGAAAACAATTTCCCATATATTGATAAAGTTATGAACATGACCAGCAAGCCTGTATTTTGGTACTGATTGAATGAGGTTTACCACCTTCTTCCACAGGGAGCAgtatttagtaatttttttattattattattataataataatcttttattatGTGCAACATTGATACACATTCCATTCCTCATGCCTGTTTTTAGtgtttcattaaatttaaaaatgaatttacatGTTTTACAAGGGCCTATGTGATGAGGGACAATTAATGTTAGTTTATTGCCCTTTTCTAATGCTGGCTTTAATTTTGGTATGCTATTatgccatctttttttttttttaaaaatctgatttaattttcatttgtgACATGACATGTATACTTGTATCAGGAGTATTATATCCCTTTTACTTTGATATGTACCAGTGTTTTTCCACAGGTTATCTTAcaggtagtttttttttttctgcccaaTGTTTTACCTTTAATATCAGGAACTGACCAGTACTTAACCATgtgtctcagaaaaaaaagaaatcaattgACTCTTTGTTCAAAGCTGTGAATTTTCTCATTGAGAGCTGGTCTCTCAGAGTGCCATTTATGTTTTTGGGATTTTTGTAGGATCTAAAATTTCCATAGTGTACTTAATCAGTGATGAAGTGACTTCTTTATACCATTATTCCCtacattataataatttcaCTTTTCATTAAGGACATTTGCTGTGCACTGCCCATGAAATTTGACCAAAAATGTAACATTCCTAGTTTTATGTATCTTCTATATAAATTACATGTAGGCCTTGTTTTTAAGCAGATATATTTTAGCATTATCAAGCCCAGCCTTTTCCACTGCTTTCATTGAATAAGCTAGCATGTCTCATTGGCATTGTTATGGCTCAGCAATGCATCGCACTGCTATATTTGCATAGATGCATATCTACTACTCCTCTATGTATGAACCTGTTTAGAAACCATGTAATGCATTTAAATGAATCAAGTATTTCATAGTGTAATCGTTTTGGTCTTGTACTGCTCAAGTGGCCTGATCAATAAATTTCATCACCATAAAGTGCA

Function

symbol description
tbc1d2b Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human TBC1D2B (TBC1 domain family member 2B).

NR:

description
TBC1 domain family member 2B

GO:      GO:0005097,GO:0032313

KEGG:

id description
K20166 TBC1D2B; TBC1 domain family member 2B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919337.2 True 5359 mRNA 0.45 13 16141596 16165999

Neighbor

gene id symbol gene type direction distance location
dapk2b dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496 coding downstream 692 16121657 ~ 16140904 (-)
ca12 ca12 coding downstream 97744 16028155 ~ 16043852 (-)
man2c1 man2c1,LOC107752311 coding downstream 116738 16014920 ~ 16024858 (-)
sema7a sema7a coding downstream 136233 15997889 ~ 16005363 (-)
ccdc33 ccdc33 coding downstream 205018 15904320 ~ 15936578 (-)
cib2 cib2,LOC103027299,LOC107752320,LOC107573330,LOC104917862 coding upstream 14918 16180917 ~ 16199115 (-)
rps27l rps27l,zgc:136826,LOC107598918,LOC107752326 coding upstream 70144 16236143 ~ 16238157 (-)
LOC113530180 LOC108274564 coding upstream 85345 16251344 ~ 16254496 (-)
LOC113529693 LOC108274564,LOC108433637,LOC108441836,LOC107750517 coding upstream 90511 16256510 ~ 16262939 (-)
trpm1b LOC108274564,LOC108433637,LOC107585966,LOC107750517 coding upstream 99563 16265562 ~ 16267986 (-)
G149495 NA non-coding downstream 46421 16093072 ~ 16095175 (-)
LOC113529609 NA non-coding downstream 48666 16068429 ~ 16092930 (-)
G149366 NA non-coding downstream 237694 15903692 ~ 15903902 (-)
G149364 NA non-coding downstream 238954 15902440 ~ 15902642 (-)
G149363 cyp11a non-coding downstream 243435 15897890 ~ 15898161 (-)
G149631 rps27l,zgc:136826,LOC107598918,LOC107752326 non-coding upstream 14907 16180906 ~ 16238108 (-)
LOC117597941 NA non-coding upstream 64615 16230614 ~ 16231809 (-)
G149643 NA non-coding upstream 83162 16249161 ~ 16251085 (-)
G149649 NA non-coding upstream 88648 16254647 ~ 16255486 (-)
G149632 klf13,znf746,LOC108274922,LOC107550220,LOC107598847,LOC107752329 non-coding upstream 143891 16309890 ~ 16317926 (-)
islr2 islr2,LOC107662462 other downstream 149502 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 422021 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 912611 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 1053536 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 1328891 14810004 ~ 14812705 (-)
LOC113529460 nrg4 other upstream 887354 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2038652 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2137143 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 2138639 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 2187975 18353974 ~ 18364036 (-)

Expression


Co-expression Network