lsm14aa (lsm14aa,LOC108274970,LOC108428766)


Basic Information

Item Value
gene id lsm14aa
gene name lsm14aa,LOC108274970,LOC108428766
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15468722 ~ 15478312 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919346.2
TCAACGTCACTTCCGTCTACAGCGCCTCAAAACGAAGGCTGCCATGTTGCAGTAGCAAAGCTGAGCGGGGCTAACGGTGACTATTGCGAAATTCTGTCTGGTCAGTGAACTGAAAAAAGGTTCACAAGGCACCTTCTGAGGATTTGCATCTATTTATTGCTTTAATTTAAAGCCTTCTGAGTCACAGAATGAGCGGAGGGACGCCGTACATCGGGAGTAAAATCAGCCTGATTTCCAAGGCCGAGATTCGCTATGAGGGAATCCTCTACACTATCGATACCGAGAACTCCACTGTGGCGCTCGCCAAAGTGCGCTCGTTTGGAACTGAGGATCGCCCCACTGACAGGCCGATCCTGCCCCGGGATGAAACCTATGAGTACATCATCTTCAGAGGGAGTGACATTAAAGACCTGACTGTTTGTGAACCTCCCAAGCCATCTTTGCCTCAGGACCCTGCAATTGTTCAGtcttCTATGGGATCTGCTGCTCCACCCTCAGCTTTCCAGAGTGGAAACTCGTATGGGCTGTTTAAACAGGCTCCAGTGTCTCCATACAGCCAGTTCACTGCCAGCCCGTTGGTTTCACCCCCATTTGGGACTGTTGGAGGTCGCAGCAGTCCTGCCCTTGACCCATTGCAGAAGAGTCCGCCCGTGGAGCCATCAGCACCGTTGGCCTCGTCAGTGAGCAGTACTGCTCCTGTGCCTGTCAGCCGCAGGAGCCCCATCACAGCGCGACTCGGCACAACCAGTACTCAGAAGGTCCTGGATGCCCCTGAACAGAGGAGGGTTGAGGGCCGGTCTAGACTACGCTCAGGACTCGGGCATGCCGCAGCAGATGCTAATGTTGTTCACTCGGGTTTTCAATCAGCAGCTGCTGGGCCTGTTGTGCCACCTGGTCCACGTCGTGGTCGTGGTGGAGGGCATCGGGGAAGAGGCCGTTACCCTGTGAGAAGAGATGGACCCATGAAATTTGAGAAAGATTTTGATTTTGAGAGTGCCAATGCCCAATTTAACAAGGAGGAGATTGACAAGGAATTCCAGAGCAAACTCAAGCTTAAAGaTGAAAAGCCAGAGAAGGCTTTGAATGGAGAGGATAAAGGTGACTCAGGGGTAGATACTCAAAACAGTGAGGGTAACGCTGATGAGGAAGATCCACTGGGACCCAACTGCTACTACGACAAGTCCAAGTCTTTCTTTGACAACATCTCCTGCGATGACACTAGAGAAAGGAGACAAACGTGGGCAGAGGAGAGGCGAATGAATGCTGAGACGTTCGGGATCCCATTCCGCCACAACAGAAACCGAGGTGGATTTCGGGGTCGTGGGGCCATGGGCTTCCGTGGAGGACGTGGTCGTGGAGCCAACCGGGGTGCATTTGGAGCACCACATGCAGGGGGCAGCGGATTCAGAGGAAGTTACAGAGGAGGCCAGGGGGGAAGAGAGTTCTCCAGTTTTGAATACAGGAAGGACAACAAAGTAGCTGCGTAGTGCAAATGGAAGCTGGAGCCACAGGACGGTGTAACTCATGGGTATATGTAATTCATCACTACTTTTGACAAGAAGAATGAAGTAAAAATTTACGAGATGTATACTTGTCACCAGCACTGGTATAGACCACTGGAGGAGTGGATATAAATGCAATTTCTTTTCCATATCTTCTAAGAGTGGAAATGTTTCAgccttttaaaatgttaatctGACAAGAATATTTCCAGATGGGGTAATTTGTGTATGAACATATTTTAGAGCAactgatgttttttcttcagtacTAAACTTGTATTTAATAACCTGTTAGCTGTAAACGAGCAGTGTATATATGCCTTTGATCACTGAaatagctttattattattttgaatatcttttttttttttttcccgctccaactttttactgtatttttctaCTTACTCACATTCTTGAAGTCTGTTGGTAGGAATTGTAATTATACTTGTTTGATTTAACTAGCATGTGATTGAATTTCCTTAGACTGTCCAAACTGCTCTGGTACattatatgtttgtgtttgctaCCTTCACAAAAGAGTAAGGTTCATTGTTTAAGGAGACATCTAATCAGTGTGACTAGTAAACGTGGATGTTGAGGAGTGAGTGACTAGGAATTGTTTTCCTCCAAAAGagtatttatgaattattttccaTGCATAGCTACATTGCTTAgaattgcaatttttaaaaggTTATGCTGAAATGTTTCAGTTCATATGGCACCAATCAGTAGGCATTTGATTTCAACTTTAGATGCTGCACCTGCCTTGTATCTGTACTTAATAAGCTGTTATAAGGCCTGTGGCTTCATACACATGTGAACAAACACATGAAGCTAAAGCATATGATGCGATATTAGCAAGAATAGCACTGGCTCTGTCAAATGGATGATCATATGTCCGTATATTCTGCACTTGAATTTGATGGGGTATGTCACTGATATCTTTTATTGAATGGAAAGGTGTATATGATAAAATGCTTTCTGTGCTTTAGCATGTATAGCCACATGTTTTTAAAGTTTGAAGTCAGCAGTGATGCCAGCATACTTGGATTTAAACAGTGCAGTATGGTGCAGGCTGTCGGGTTCAACTGTGTAAGGCAagtgaatataataaaatggcCACTAAGGGTGTGTTGTTTAGCACTTACTTCTTATATTAATCTGCTGAGTATTAGTGTTGTTGCTGCACTATTTACCAGTGTAGTGAGTAGGTAAACATGTACAGCGAGGCCGTAGAACATAAAGATTTGTCATCCTTGACTGCAGAAGGCTGTTTACTTCAGTTAGGTATTGCATTCCTCTTGCATTGTCTACACCACTGTATGGATTGATGTTTATAATGTTGGCAATTAGATATAGAGCTAATTAATATTCCTTGATCTGGTTTCAAAAGCATGTTCATTTGATGAATTGTGGCTGGATATCATATTTGACTTGACTGTGCTCAGAGTGCATGTGCACAATGTAAGCTCCTGTCTACACTGTGGTGTGAATGAACCCTATTCACAGATCTATTTCTAGTTCTGTTTTGTGTTCTTACTACATATATGAACGTCCTTCAAATTTGTTTAAGATCTCTGATCTAACTGGTAGGCTGTTCAAACTGTAAGTAAAATGCAGATGCTTAAGGTAGTCAAAATAACTATTTCTGATTtgttaatatttcacaggtATCTAACAAATTTAACGATTCAGCCTATTTAAATTAAGCTTCTGAACTTTTCTACCTCACATAGCTTATGATAAGACGAACAATACACTTCTCTATGAATGCTCTATACAACACTACATTCACCACACAAacctatatataaataaattgtcaccaatgtttaaaaaaaaattgtactccAAGCAAAAGTTGAATTGACTAAAGAATTTAAGTTGTAAATTTTTCTCGTAGACACTTGAGAAGCTACTTGAATCTCTAATTATAGAAtcttaaagtttatttaaaatacatgagAAAAAGTAATGTTAGTAATGTTGTTAGTAATAGGCTCTAGACCGCAAACCAGCAACACTCAATAAATACAGCTCTTTTCATTTCTCTAATCCCCTTGTTCTTTCCTCAAAGCCCCAATTACATGTTTAACAAggtataatattttattcattaattcaggTTTTAGTTGGGCTTTGTAAAGCATCATATTTGTGGCTCCACACTGAAATTATTAGTTTTTACCCACCGCTGGCTATTATTTGATCACTTATTAGTTATGAGTATGATGGAACAAAATGCCCATTTGCCTGTTCATTGTTGGACTTTTTCAGTTAATCACTAAATGGTTTGCAGGAAGAATGTGAACTTGTGTAAAATACCAAAAAATTTGCAATAGTgctagatttatttatttatctttttttggtCAACATCACTAACAAGAATTAATAGTATGACACTGCTAGATGGTAATGTTTTGTCATGTTATTTTCCATTAGACTGTTCATTAACTAAAAATCAGGTTGTCTGGTGTATTTTTGTCAAaagtattagcattagcaataatttttgtttatttaaacatattttactaCCTAGGAGCTAACTGGTTTTTTTTGGGTGCTGTATATCACCATGGCATGGTAACG

Function

symbol description
lsm14aa Predicted to enable mRNA binding activity. Predicted to be involved in P-body assembly and stress granule assembly. Predicted to be part of messenger ribonucleoprotein complex. Predicted to be active in P-body. Orthologous to human LSM14A (LSM14A mRNA processing body assembly factor).

NR:

description
protein LSM14 homolog A-like isoform X5

GO: NA

KEGG:

id description
K18749 LSM14, RAP55, SCD6; protein LSM14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919346.2 True 4104 mRNA 0.41 8 15468722 15478312

Neighbor

gene id symbol gene type direction distance location
gpia gpia,LOC108274969,LOC108428767,LOC107679975 coding downstream 2941 15454180 ~ 15465781 (-)
hsd17b2 LOC108275401 coding downstream 16010 15448742 ~ 15452712 (-)
rpgrip1l rpgrip1l coding downstream 63544 15385088 ~ 15405178 (-)
irx5b LOC108275041 coding downstream 183495 15281858 ~ 15285227 (-)
LOC113530066 prkar2b,LOC108275286,LOC107676465,LOC107732287 coding downstream 251665 15200015 ~ 15217057 (-)
cpne8 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC106561599,LOC105026415,LOC106573107 coding upstream 2726 15481038 ~ 15520462 (-)
kif21a kif21a,LOC102199929 coding upstream 44375 15522687 ~ 15566408 (-)
slc2a13b slc2a13 coding upstream 89517 15567829 ~ 15577214 (-)
spi1a LOC108275191,LOC108442687 coding upstream 141987 15620299 ~ 15627455 (-)
fibina LOC108275273 coding upstream 162029 15640341 ~ 15642520 (-)
G149057 NA non-coding downstream 91316 15377203 ~ 15377406 (-)
G148992 NA non-coding downstream 137290 15331207 ~ 15331432 (-)
G148919 slc25a3,LOC107569351,LOC107754323 non-coding downstream 330715 15136126 ~ 15138007 (-)
G148920 LOC108275086 non-coding downstream 336225 15130776 ~ 15132497 (-)
G148926 LOC108275086,LOC108428785,LOC106523631,LOC105938579,LOC107388471 non-coding downstream 340216 15127232 ~ 15128506 (-)
G149301 NA non-coding upstream 246939 15725251 ~ 15725901 (-)
G149305 fancf non-coding upstream 272847 15751159 ~ 15752470 (-)
G149312 NA non-coding upstream 279972 15758284 ~ 15758501 (-)
G149363 cyp11a non-coding upstream 419578 15897890 ~ 15898161 (-)
G149364 NA non-coding upstream 424128 15902440 ~ 15902642 (-)
LOC113529695 NA other downstream 239737 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 380662 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 656017 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 1632967 13825782 ~ 13835755 (-)
trnar-acg_1 NA other downstream 1678177 13790287 ~ 13790545 (-)
LOC113529470 LOC108275326 other upstream 233681 15711993 ~ 15719575 (-)
islr2 islr2,LOC107662462 other upstream 502852 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 662807 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1575041 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2726339 18204651 ~ 18214487 (-)

Expression


Co-expression Network