ccdc77 (ccdc77,LOC107754361)


Basic Information

Item Value
gene id ccdc77
gene name ccdc77,LOC107754361
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19167269 ~ 19175104 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919358.2
CGTGTTTGCGCATAAGAGGCGCAGCATTGATGCCCACTGAGTTACCCTGATCAACTACCGGTTCAAcgggcaaacaaacaaaagccgAATTTGTGTCCTGTACAAGGCAGTAAGAAGCATGATGGATTCTTCACCAACACGGCAGCGTGTCAGAGAAGGCTGTGAGACTAAGCAGGAGACAGACTCCCCACTGCCTCCCATCTCTGAGCGCTTGGCTTATCTCAGACCATCTCGTGAGTTGCTGGAGTTTTACAGACAGAAAGTAGCTCAGTTTGATGCAGAACATGATGACCTGCTGCAGCTGCTTGAGAAGTATAAGAGCACTACAGAGGACCAGCACAAGCTGCAGTGGGAAGTGCGTCAGCGGGAAGAGGAGATAGCAGAACTGCAGAAGGCTCTGAGTGACATGCAGGTTTACCTCTTCCAGGAGCGAGAACAGGCTCTTCGGCTATATGCTGAGAACGACCGCCTTAAGATCAAAGAGCTTGAAGACCGGAAGAAGATTCAGCAACTTTTAGCATTGGTGGGCCCAGATGCAGGCGAGATCACCTATTTTCACAGAGAGCCTCCACACAAGGTCACTATTCCACAAAAGAAACTCCAACCCAGAACGCAGGAGTATGGAAATGTGGCAAAACCAAGGCCTGGATCATCTaaagAGGGGGGTAAGAGACTGTCCAAAAGTGGAGGAGGTGAGACAAACTCTGAGCAGTACAAGAAAGATAACCAGACACTTTTACTACAGGTGGAGGCACTGCAGGCACAGCTGGAAGAGCAGACACGCCTGGCTAAAGAGCAGGTGGAGTCCCTGCTGGAGGACAGAAGAATTCACATGGAGGAGGGGCAGGTCCAGCGGCAGAGAGACCAGGAGAGACTCGCTGCATTAACTGAGAAACTCCAGCGCACGCAGAACTTACTCTATGAGAGCACCAGAGACTTCCTGCAGCTGAAGTTTGAAAGTCGATCTCATGAGAAGAGCTGGATGGTGGAGAAGGACAGGCTCCTGAGAGAGATGGACTCGTGCCAGGAGAGGCTGAGGGAGACACGCAGCTTCCAAGAGCAGCCAGGAGCCTTCACAACCCCATTGCTCCTCACCCAACCTACTCCAGAGAGCAGCCAGATGCATCGTGATGAGATCAGGGCACTACAAGAGGATTTGAAGCAAGCCCATAAGCTAGCAGACATGTACAGAGAGCAGTGTGTAGGTCTGGAGACTGATCTGGCACAGATCCGAGAGGAAGGAGACGTAGGCCGAGAGATCTTCAAGGAGCGCTCAGACAAAATGGCCAAGCGTCTCCAGTTAATGACTCAGCGTTATGAAGCTCTGGAAAAGAGGCGATCCATGGAGGTGGAAGGCTTCAAGACTGACATCAAACATCTGCGACAGAAACTCAAAGATGTGGAGAAGCAGCTCTTTAAGGTGACTCTTAACGTGGGCCCAGATCAGGACTTGGCCATCCTGCATGAAGTTCGACAGTCAAACGCCCGCACCAAGAAAATCCAGAACGAATTAAAAAGCTTAAAAGCAAAGATATACGGACTGGAGAATGAACTAAGATTCagctgaattttaaaatgtggaaGATCTTGCCCTTTTTGAGCCTATGCAGTGCAGCCTAATATCAAATTTCACCAAGGAAGGTCCCACTAGGGGTGAGAATCAGTTGTATGGATTGATTATGTTGGGCCGGTTCATTATTCAGTATCGTTATTGTGTAACATTGACATGTAGACAAAAGCCATGCAGAACAGAGGACTTGTGATTGTAtgtagtttg
>XM_026919359.2
AGATACACTGCCTGTTTCTACTccagagcttcatttaatgcagcTTTTAAACTATTATTCATATCTGCACTCTATTTCTGGTAGTTTGGTGTAATTTCCTGATTAATAGCAAGCACTTGCGCGTTCATTGTACTGGAAAAGTTTAGTTATGAACCGGCAGTAAGAAGCATGATGGATTCTTCACCAACACGGCAGCGTGTCAGAGAAGGCTGTGAGACTAAGCAGGAGACAGACTCCCCACTGCCTCCCATCTCTGAGCGCTTGGCTTATCTCAGACCATCTCGTGAGTTGCTGGAGTTTTACAGACAGAAAGTAGCTCAGTTTGATGCAGAACATGATGACCTGCTGCAGCTGCTTGAGAAGTATAAGAGCACTACAGAGGACCAGCACAAGCTGCAGTGGGAAGTGCGTCAGCGGGAAGAGGAGATAGCAGAACTGCAGAAGGCTCTGAGTGACATGCAGGTTTACCTCTTCCAGGAGCGAGAACAGGCTCTTCGGCTATATGCTGAGAACGACCGCCTTAAGATCAAAGAGCTTGAAGACCGGAAGAAGATTCAGCAACTTTTAGCATTGGTGGGCCCAGATGCAGGCGAGATCACCTATTTTCACAGAGAGCCTCCACACAAGGTCACTATTCCACAAAAGAAACTCCAACCCAGAACGCAGGAGTATGGAAATGTGGCAAAACCAAGGCCTGGATCATCTaaagAGGGGGGTAAGAGACTGTCCAAAAGTGGAGGAGGTGAGACAAACTCTGAGCAGTACAAGAAAGATAACCAGACACTTTTACTACAGGTGGAGGCACTGCAGGCACAGCTGGAAGAGCAGACACGCCTGGCTAAAGAGCAGGTGGAGTCCCTGCTGGAGGACAGAAGAATTCACATGGAGGAGGGGCAGGTCCAGCGGCAGAGAGACCAGGAGAGACTCGCTGCATTAACTGAGAAACTCCAGCGCACGCAGAACTTACTCTATGAGAGCACCAGAGACTTCCTGCAGCTGAAGTTTGAAAGTCGATCTCATGAGAAGAGCTGGATGGTGGAGAAGGACAGGCTCCTGAGAGAGATGGACTCGTGCCAGGAGAGGCTGAGGGAGACACGCAGCTTCCAAGAGCAGCCAGGAGCCTTCACAACCCCATTGCTCCTCACCCAACCTACTCCAGAGAGCAGCCAGATGCATCGTGATGAGATCAGGGCACTACAAGAGGATTTGAAGCAAGCCCATAAGCTAGCAGACATGTACAGAGAGCAGTGTGTAGGTCTGGAGACTGATCTGGCACAGATCCGAGAGGAAGGAGACGTAGGCCGAGAGATCTTCAAGGAGCGCTCAGACAAAATGGCCAAGCGTCTCCAGTTAATGACTCAGCGTTATGAAGCTCTGGAAAAGAGGCGATCCATGGAGGTGGAAGGCTTCAAGACTGACATCAAACATCTGCGACAGAAACTCAAAGATGTGGAGAAGCAGCTCTTTAAGGTGACTCTTAACGTGGGCCCAGATCAGGACTTGGCCATCCTGCATGAAGTTCGACAGTCAAACGCCCGCACCAAGAAAATCCAGAACGAATTAAAAAGCTTAAAAGCAAAGATATACGGACTGGAGAATGAACTAAGATTCagctgaattttaaaatgtggaaGATCTTGCCCTTTTTGAGCCTATGCAGTGCAGCCTAATATCAAATTTCACCAAGGAAGGTCCCACTAGGGGTGAGAATCAGTTGTATGGATTGATTATGTTGGGCCGGTTCATTATTCAGTATCGTTATTGTGTAACATTGACATGTAGACAAAAGCCATGCAGAACAGAGGACTTGTGATTGTAtgtagtttg

Function

symbol description
ccdc77 Predicted to be active in centrosome. Orthologous to human CCDC77 (coiled-coil domain containing 77).

NR:

description
coiled-coil domain-containing protein 77

GO: NA

KEGG:

id description
K16757 CCDC77; coiled-coil domain-containing protein 77

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919358.2 False 1777 mRNA 0.49 12 19167269 19175104
XM_026919359.2 True 1827 mRNA 0.48 12 19167770 19175104

Neighbor

gene id symbol gene type direction distance location
LOC113529841 LOC108274949,LOC108428426 coding upstream 5121 19154291 ~ 19162148 (+)
zgc:153293 LOC108274949 coding upstream 13151 19149067 ~ 19154118 (+)
slc7a10b slc7a10,slc7a10b,LOC108274532,LOC108428368,LOC107679961,LOC107555706,LOC107752484,LOC105900738 coding upstream 26329 19126879 ~ 19140940 (+)
LOC117598072 NA coding upstream 89401 19076595 ~ 19077868 (+)
wwox wwox,LOC107559152 coding upstream 187810 18806926 ~ 18979459 (+)
incenp incenp,LOC107701072 coding downstream 29390 19204494 ~ 19216347 (+)
prnprs3 NA coding downstream 46825 19221929 ~ 19226416 (+)
LOC113530162 LOC108274540,LOC103046250,LOC108428357 coding downstream 62568 19237672 ~ 19240638 (+)
thoc5 thoc5 coding downstream 94590 19269694 ~ 19280582 (+)
chid1 chid1,LOC107674841 coding downstream 110681 19285785 ~ 19292110 (+)
G151134 NA non-coding upstream 56296 19109843 ~ 19110973 (+)
G151084 NA non-coding upstream 169337 18955049 ~ 18997932 (+)
G151093 NA non-coding upstream 221327 18945275 ~ 18945942 (+)
LOC113530068 NA non-coding upstream 546448 18601539 ~ 18620821 (+)
G150958 NA non-coding upstream 615132 18551893 ~ 18552137 (+)
G151395 NA non-coding downstream 51545 19226649 ~ 19227893 (+)
G151417 NA non-coding downstream 142882 19317986 ~ 19393161 (+)
G151419 NA non-coding downstream 218770 19393874 ~ 19397489 (+)
G151421 NA non-coding downstream 223174 19398278 ~ 19400388 (+)
G151445 LOC108274686,LOC108415052 non-coding downstream 228205 19403309 ~ 19403657 (+)
faap24 faap24 other upstream 42068 19121151 ~ 19125201 (+)
nfat5a LOC108274760,LOC108428435 other upstream 371010 18747827 ~ 18796259 (+)
urahb LOC108274538 other upstream 442583 18721595 ~ 18724686 (+)
rfwd3 rfwd3,LOC107754982 other upstream 483841 18675010 ~ 18683428 (+)
tmem17 tmem17,znf774,LOC107678976 other upstream 983236 18182554 ~ 18184033 (+)
G151401 NA other downstream 85520 19260624 ~ 19263893 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other downstream 148227 19323331 ~ 19384904 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other downstream 486739 19661843 ~ 19748080 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other downstream 2877510 22052614 ~ 22058158 (+)
arpp19b arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970 other downstream 2901745 22076849 ~ 22078496 (+)

Expression


Co-expression Network