gpia (gpia,LOC108274969,LOC108428767,LOC107679975)


Basic Information

Item Value
gene id gpia
gene name gpia,LOC108274969,LOC108428767,LOC107679975
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15454180 ~ 15465781 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919371.2
TTCATCGGGCTACTTTCTACTGAAGCTGCACTCACTACTTAGCGCTCTGTCAGCGTTTACATTCGCCTGGCTTTAGAGAGAATCTGTACACGGAGTCTAGCACCGCTGAAATCtcaacatcaccatcatcatggGGCTGACTGACGATCCGAACTACAAGAAGCTGGAGCAGTGGTACAAATCCAACGCTGCAACCTTGAACATGAGGCAGATGTTCGATGCGGACAAGGACAGGTTCTCAAAATTCAGTCTAACCCTTAAGACAGATGATGGAGACTTACTTTTGGATTATTCAAAGAATCTCATCAATGAAGATATTCTCAAGTTGCTGCTGGACATGGCAAGGTCAGTGGGAGTGGAGGCAGCCAGGGAGCGCATGTTTGCTGGAGAAAAGATCAACTTCACTGAGGGCCGAGCTGTCCTTCATGTAGCCCTGAGGAACCGCGCTAACACCCCTGTCCTGGTGGATGGAAAAGATGTCATGCCTGAGGTGAACAGAGTCCTGGAGAAAATGAAGGGTTTCTGCCATAGAGTGCGCAGTGGAGAGTGGAAAGGCTTCAGTGGTAAAGCCATCACTGATGTTGTGAACATTGGCATTGGTGGATCTGACCTGGGTCCACTGATGGTGACAGAGGCTCTGAAGCCGTATTCTAAAGGTGGCCCAAATGTCTGGTTCGTCTCCAACATCGATGGGACACACATGGCTAAGACTTTGGCTCAGCTGAATGCAGAAACCACACTTTTTATTATTGCATCCAAGACTTTCACTACCCAGGAGACCATCACTAACGCCGAGTCTGCTAAGGAATGGTTCCTGCAGACTGCCAAGGATGCTTCTGCAGTGGCCAAACATTTTGTGGCTCTCTCCACCAATGCGcccAAAGTGAGAGACTTTGGCATCGACACTGAGAACATGTTTGAGTTCTGGGATTGGGTTGGTGGGCGCTATTCACTGTGGTCGGCTATTGGTTTGTCTATCGCTCTGCACGTAGGTTTTGACAACTTCGAGCAGCTTCTAGCCGGTGCCCACTGGATGGATAAGCACTTCTGCTCAGCTCCACTGGAGAAGAATGTTCCTGTGCTGCTTGCCTTGCTGGGTATCTGGTACATCAACTTCTTCCAGGCTGAGACTCATGCTATGTTGCCCTATGACCAGTACATGCACCGCTTTGCAGCTTACTTCCAGCAGGGTGACATGGAGTCTAACGGAAAGTACATCAGCAAGAATGGAACTCGTGTGAACTACCACACAGGACCCATCGTATGGGGAGAACCAGGGACAAACGGCCAGCATGCTTTCTACCAGCTCATTCACCAAGGGACTCGTATGATTCCAGCTGACTTCCTCATACCTGCTCAGTCTCAACATCCAATCAGAGATAATCTGCATCATAAGaTCCTGATGGCCAACTTCCTGGCTCAGACTGAGGCTCTGATGAAGGGAAAGACACCAGATGAAGCCAGAAAGGAGCTGGAGGCCACTGGCATGAGTGGAGATGCTCTGGAGAAACTCCTGCCACATAAAGTATTCCAAGGAAACAAGCCAAGCAACTCCATCATGTTCAAGAAGCTGTCTCCTTTCATGCTTGGACTTTTGATTGccATGTATGAGCACAAAATCTTCGTGCAAGGTGTGATGTGGAATATCAACAGTTATGACCAGTGGGGTGTGGAGCTGGGCAAACAGCTGGCTAAGAAAATTGAGCCTGAGCTGCAGGACAATTCTGAGGTCCACACTCACGACTCGTCCACCAACGGGCTTATCGGCTTCTTCAAGAAAAATCGTGCATGAAATGCTCAGTCAGACCTTCTGCCTCACCTCTCCGATGGAATCAGTGGATTACATAATAAAGCCGTGATGTAGTCTAGGCCTAACTCAAGAGGAATAGCACTTTACATATGTAACCATTGTCTATTTGATCGTGTTTGTGCGTTGTGAGATTTGACTGTACTCATTTGCCTGTTCTAACCTGTAAAAGGAATCTCCATTCCTGTATGCACTGCAAGGTCTGGAACGCTGTAACTCCCCCCGCACCTTTCTCTTCCTACACGCTTTGCCATATGCTTGGTTAAAACCAGATGGTCAAAATAAATATCTTATTTATCA

Function

symbol description
gpia Predicted to enable glucose-6-phosphate isomerase activity and monosaccharide binding activity. Predicted to be involved in gluconeogenesis; glucose 6-phosphate metabolic process; and glycolytic process. Predicted to be located in extracellular space. Predicted to be active in cytosol. Is expressed in several structures, including cardiovascular system; digestive system; musculature system; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in congenital hemolytic anemia; congenital nonspherocytic hemolytic anemia; intellectual disability; and neuromuscular disease. Orthologous to human GPI (glucose-6-phosphate isomerase).

NR:

description
glucose-6-phosphate isomerase-like

GO:

id name namespace
GO:0006094 gluconeogenesis biological_process
GO:0006096 glycolytic process biological_process
GO:0004347 glucose-6-phosphate isomerase activity molecular_function

KEGG:

id description
K01810 GPI, pgi; glucose-6-phosphate isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919371.2 True 2107 mRNA 0.48 17 15454180 15465781

Neighbor

gene id symbol gene type direction distance location
hsd17b2 LOC108275401 coding downstream 1468 15448742 ~ 15452712 (-)
rpgrip1l rpgrip1l coding downstream 49002 15385088 ~ 15405178 (-)
irx5b LOC108275041 coding downstream 168953 15281858 ~ 15285227 (-)
LOC113530066 prkar2b,LOC108275286,LOC107676465,LOC107732287 coding downstream 237123 15200015 ~ 15217057 (-)
hbp1 hbp1,LOC107701066,LOC107754327 coding downstream 254510 15194318 ~ 15199670 (-)
lsm14aa lsm14aa,LOC108274970,LOC108428766 coding upstream 2941 15468722 ~ 15478312 (-)
cpne8 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC106561599,LOC105026415,LOC106573107 coding upstream 15257 15481038 ~ 15520462 (-)
kif21a kif21a,LOC102199929 coding upstream 56906 15522687 ~ 15566408 (-)
slc2a13b slc2a13 coding upstream 102048 15567829 ~ 15577214 (-)
spi1a LOC108275191,LOC108442687 coding upstream 154518 15620299 ~ 15627455 (-)
G149057 NA non-coding downstream 76774 15377203 ~ 15377406 (-)
G148992 NA non-coding downstream 122748 15331207 ~ 15331432 (-)
G148919 slc25a3,LOC107569351,LOC107754323 non-coding downstream 316173 15136126 ~ 15138007 (-)
G148920 LOC108275086 non-coding downstream 321683 15130776 ~ 15132497 (-)
G148926 LOC108275086,LOC108428785,LOC106523631,LOC105938579,LOC107388471 non-coding downstream 325674 15127232 ~ 15128506 (-)
G149301 NA non-coding upstream 259470 15725251 ~ 15725901 (-)
G149305 fancf non-coding upstream 285378 15751159 ~ 15752470 (-)
G149312 NA non-coding upstream 292503 15758284 ~ 15758501 (-)
G149363 cyp11a non-coding upstream 432109 15897890 ~ 15898161 (-)
G149364 NA non-coding upstream 436659 15902440 ~ 15902642 (-)
LOC113529695 NA other downstream 225195 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 366120 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 641475 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 1618425 13825782 ~ 13835755 (-)
trnar-acg_1 NA other downstream 1663635 13790287 ~ 13790545 (-)
LOC113529470 LOC108275326 other upstream 246212 15711993 ~ 15719575 (-)
islr2 islr2,LOC107662462 other upstream 515383 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 675338 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1587572 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2738870 18204651 ~ 18214487 (-)

Expression


Co-expression Network