washc4 (kiaa1033,si:dkey-23p11.2,LOC107696292,LOC107678984)


Basic Information

Item Value
gene id washc4
gene name kiaa1033,si:dkey-23p11.2,LOC107696292,LOC107678984
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18228113 ~ 18245704 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919382.2
GTTTCGAAACATACCCCAAACTCGTTTTAGAACGAAGGCGCAACAAAACTTTTGAAACGAAGTGAAGTAACGGCGCTTCCGTTCACGTGACCTGGCCGTTTCGATAGAGTCGCTGTTTCGAGTAGCCACGCCCACTAGCAGCTTGTGCAGTTGGGCGGGATTTACAGTAATACgggtaggaaaaaaaatttcctGACCCAAGGAGACCTCAGAACAAGGAAGATTAGTACAGTTTACTTTCTCCAGGCTGATATCAGGCCAGCGAGTCAGGCAGTACTGCCTGCGGTTCACTGTAGGCTAAGCTCGACTCTAGCTGTTTTTAAGGATGGCAGTGGAGTCAATATCACCCGACTGGGAGTTTGATCGCTTTGATGACGGATCTCAGAAAATTCACACAGAAGTGCAGCTGAAAAACTATAACAAGTTCTTAGAGGACTACACGTCTCAACTGAAAGCTATAGAGGAAGCCCTGGACGACTCCATCGGAGATGTTTGGGATTTCACTTTAGACCCGATAGCACTGAAGCTCCTCCCTTATGAACAGTCTTCCCTTTTGGAGctaattaaaacagaaaataagGTCCTAAATAAAGTCATTACAGTCTATGCGGCTCTCTGCAGTGAAGTTAAGAAGCTGAAATATGAGGCTGAAACAAAATTCTACAATGGCTTGCTGTATTATGGTGAAGGAGTTTCAGACACCAGTGTGGTGGAGGGAGAGTGTCAAGTTCAAATGGGACGCTTCATCTCATTTTTACAGgaactGTCTTGCTTTGTGTCTCGGTGCTTTGAGGTTGTGGTTAACCTGGTTCACCAGCTGGCTGCACTGTACAACAGCAACAAAGCTGCCACAAAAATCATTGAGTCAAGTGGAGTACATTTTCAgACGGTATATGAGCATCTAGGTGAACTCCTGGTGGTTCTGATCACCTTGGATGAGATCATGGAGAATCATGGCACTTTAAGAGATCACTGGAAGATGTACAAAAGATTACTTAAATCTGTCCATCACAACCCATCTAAATTTGCTATTCCTGAAGAGAAGCTGAAGCCTTTTGAGAAGCTTTTGTTGAAGCTGGAGGGCCAGCTTCTGGACAGCATGATCTTTCAGGCTTGTGTAGACCAGAGATTTGATAATCCTGGGGAAGGTGTATCAGTCTCTAAAAACAGTGCCTTTGCTGAGGAGTTTGCTCACAACATTCGCACTATCTTTGCCAATGTGGAGTCAAAACTTGGGGAGCCTGCAGAGATTGACCAAAGGGATAAGTATGCCGGGGTCTGTGGCCTCTTCGCCCtgcatttccacatttttcGTACAGTGGACAAGAGGCTCTACAAAGCTCTTTTGGATGTGTGTAAAAAGGTCCCTGCAGTTACACTGACTGCCAACATAATCTGGTTTCCTGATACATTTTTGATTAATAAGATCCCAGCAGCAGCCAAGCTGATGGATAAGAAAAGTCTCCAGGCCATTCGTATCAGCAGAGATACATTCTTACAACAAAAGGCACAGACACTAACAAAGGATGTGCAGTCTTACTATGTTTTTGTAACCTCCTGGATGATGAAGATGGAGGCCATCTTATCTAAAGACCAGAAAACTGAGAAACTCTCAGAAGATCTGAGCAATAGGTGCAATGTGTTTGTACAGGGAATCCTATATGCATACAGCATCAGCACTATCATAAAAACCACCATGAACCTCTACATGTCCATGCAGCGACCCATGACCAAGACCTCTGTGAAGGCCCTGTGTCGTCTAGTAGAGCTACTGAAGgcagTAGAGCACACGTTCCACCGGCGATCCCTTGTGGTGGCAGACTCTGTGTCCCATATCACACAGCAGCTGCAGTCACAAGCTCTAGCCTCTATTTCTACAGCTAAGAAAAGAGTGATCTCTGATAAGAAGTACAGTGAGCAGAGGCTGGATGTGCTTTCGGCCCTGGTGCTCGCTGAGAACACACTGAATGGCCCGAGCACCAGGGAGAGAAGACTGGTGGTGTCCCTAGCGCTCAGTGTGGGCACTCAGATGAAAACATTCAAGGATGAGGAGCTTCTGCCGTTACAACTTGTCCTAAAGAAACTGGACCTCATTAGTGAATTAAGAGAGAGGGTCAAAGTGCAGTGTGATTGCAGCTTTCTCTACTGGCACCGTGCAGTGTTTCCCATTTACCTGGATGATGTTTATGATAATGCTATGGATGCAGCTAGAATACATTATATGTTTAGCGCTCTAAGAGACTGTGTGCCCACCATGCTATACGCCAAACACATGGAGTCCTGTGAGCAGCTACTGGAGTGCTATGACAGCGAGATCATGGGGGTCTTCACTGAGCATTTGTTGGACAAGCTGTGTAAGGAGATAGAGAAAGACCTCCGTCTTTCTGTGCACACACATCTCAAGCTGGATGACCGTAACCCTTTCAAAGTAGGCATGAAAGATCTGGCTCACTTCTTTTCCCTGAAGCCTATCCGCTTCTTCAATCGCTTCATAGACATCAAAGCCTATGTCACACACTACCTggacaaaacattttacaacCTGACAACAGTGGCACTCCATGACTGGGCCACGTACAGTGAGATGAGGAACCTGGCCACGCAGCGCTATGGCCTGGTCATGACCGAGGCTCATCTCCCCAGCCAGACTCTGGAACAGGGGCTGGATGTATTGGAGATTATGAGGAACATCCACGTTTTTGTCTCACGTTATCTCTACAATCTGAACAACCAGATCTTCATTGAGAAGACCAGCAACAACAAGCACTTGAACACTATCAACATTCGGCACATTGCTAACTCCATCCGCACCCATGGGACTGGTATCATGAACACAACTGTGAACTTTACTTATCAGTTCCTCCAAAAGAAGTTCTACATTTTCAGTCAATTCATGTACGATGAGCACATCAAGTCCAGGCTTATCAAAGACATCCGTTTCTTCAGAGAAACTAAAGACCAGTCAGATCAAAAGTACCCCTTTGAGAGGGCAGAAAAGTTCAACCGTGGTATTAGGAAATTGGGCATCACTCCAGATGGCCAGAGCTACCTGGACCAGTTCAGACAACTCATCAGCCAGATTGGTAATGCAATGGGGTACGTACGGATGATCCGCTCTGGGGGTCTTCACTGCTGCAGCAGCGCCATCAGGTTTGTTCCTGATCTTGAGGATATTGTGAACTTTGAGGAGTTGGTGAAGGAGGAGGGTCTCACTGAAGAGACTCAGAAAGCAGCCAGCGTTCTAGACTGTGTACTCAGCGACCTGACCAGTAACTCAGCTGAGGGAACTGAGTATTTCAAAATGCTTGTGGGAGTTTTTTCCCCGGAGTTCCGCAGCGTGAAGAATATGCACTTGAGGAACTTCTACATGATCGTTCCTCCTTTGACAGTAAACTTTGTAGAACACTCCATCAGCTGCAAGGAGAAGCtgaacaaaaagaacaaaagtgGTGCAGCATTTACAGATGATGGCTTTGCCATGGGTGTTGCTTACATCTTGAAGCTGCTGGACCAATATCAGGAGTTTGACTCATTGCATTGGTTCCAGGCAGTTCGAGAGAAATACATGAAGGAGATGAATGCAGTGGTGAAAGAACAGAATGTTCAGGCCACCAACCAAGATGAGAAACTGATGCAGACCATGAACTTAACTCAGAAGAGACTAGACATCTACCTGCAGGAGTTCGAGCTGCTGTACTTCTCTCTGAGCAGTGCACGGATATTCTTCAGGGCCGACAAGACTGCAGCGGAGGAAACTCAGGAGAAGAAGGATAGGGAGGATGCTGCTTCATCTGAGGCTGCTGCCACCCCTGAGCCGGGTGCCAAGTGAAACTAAAAACATCTCCCACTTCAAGTCTTTAAGGTCATATTACGGAGTGGAAACAAACCAGCTTATCCAGAAACTGTATAGAGTGCCATGTTTTGGATTGTAACTCAGTATTGCATGGCAAGATAAAAGATAAATGGCCTGTGGTCACTGACCGtgaatcaggaacatgcagtgtgaatgtgtattcCTTCTAATGCACTTAGGACTGGAACTGACTGTGATCTGCTTCTAGAAAAACATGCTCATGTCACTATTATTTTCTGCATTGCTAGACAGATTTTGTCAGATAACTGTCAGGTGAGCAAGTTTGGCAGCTGTAATTAGTTGGTGAATGAGacctttttttagttttaagaaatattttagtATGGCAACTGTTTTGAAATACTAAAGCAaagtttgatttttaattacaaatcAAATCATCTTTGATAATTTCCCTTTGCTAATTTGATTAGAAATGTCTTTCCAGATTCTTCATGATAATGTATAAAGTGGAGGTGCTTATATAACAGGTTCTACATGGAGGTAGGCCAGTTGCTAGATTTACAACAGTGACAGTTTTACAATGAGTTCCGAGTACATTCTAATGCACTtaagagaagaataaaagattGCATTTCTAGCTAGGTAATTTTCATAACTAGGTGTCTAACTCAGTTTCTTTGGTACAGTATGCTAATGAGTTATAGTTCTGCAATTGATTCTGCTCTGAGAATGTCCTGTCCAGTGTAACACTCTATGTAAGGAGAAATAAGTGTTGTGTTGAGCAATGTGAAAAggtggcattttttaaaaaccaacATAGGCTCTCTGGACAAGAAATTGCTCACATCCGCCTGCCAAAACTTCATTGTACAGTGATGGGACACTGGGACATATTCACTGGCCTGCAAACTCACCAGAACTTAATTCCATAGGAAACTTGTGGGATTATTTGGAACAGCAGGTGAAACACCAAGATAGGTACCATGAAATCTCACGAGGTTGCACACCCTGTCAGTGaagggaagggaaaaaaattaataggaACTCTCTCAATAAACTGGCGGGATCCTCATGTGACCAGATTGGCGAGGGGAGGCCTGCCCAAGTATTAGAAGAGAAATGACACGATTGATTTTTTGTTCAGTGAGCTCAAGTCCATGGAAATGTAGCAAACTAACATTGTATTGAGTACCTATCTgtataaaaatgtgtgcatctgaagctttgtttgtttgtttgtttgttttaaatgcacATAATGCTTAATGGTAGAATTTTTGAAAACATTCCAGTTGAATACAGACTTTCCTCCTTGAAC

Function

NR:

description
WASH complex subunit 4 isoform X1

GO: NA

KEGG:

id description
K18465 MRT43, SWIP; WASH complex subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919382.2 True 5135 mRNA 0.44 33 18228113 18245704

Neighbor

gene id symbol gene type direction distance location
lrrc10 lrrc10 coding downstream 9372 18216233 ~ 18218741 (-)
agbl2 agbl2 coding downstream 25488 18184111 ~ 18202625 (-)
ptprz1a ptprz1,LOC108274749 coding downstream 63303 18113006 ~ 18164810 (-)
asb15a asb15 coding downstream 306592 17914613 ~ 17921521 (-)
LOC113530148 hyal4,LOC108436916,LOC108181664,LOC107573489,LOC107752304,LOC107753633 coding downstream 367766 17846961 ~ 17860347 (-)
arid3b LOC108275332,LOC108436938,LOC107575848,LOC107752332 coding upstream 72920 18318624 ~ 18338423 (-)
LOC113530128 LOC108275329,LOC108436939,LOC103046663,LOC100697142,LOC101479677,LOC107576348,LOC107716663 coding upstream 94749 18340453 ~ 18347647 (-)
hcn4l hcn4,LOC108274590,LOC108436942,LOC107573709,LOC107696280,LOC102793391 coding upstream 133025 18378729 ~ 18398258 (-)
nptna LOC108274497,LOC108436943 coding upstream 158808 18404512 ~ 18420371 (-)
ube2q2 ube2q2,LOC108436947,LOC105015542,LOC107696278,LOC107661444 coding upstream 202438 18448142 ~ 18457983 (-)
G150776 NA non-coding downstream 115636 18112252 ~ 18112477 (-)
G150631 NA non-coding downstream 315258 17912640 ~ 17912855 (-)
G150551 NA non-coding downstream 468414 17759421 ~ 17759699 (-)
G150495 grm8b non-coding downstream 529029 17698687 ~ 17699084 (-)
G150469 NA non-coding downstream 572324 17655589 ~ 17655789 (-)
G150834 NA non-coding upstream 9371 18255075 ~ 18255418 (-)
G150854 NA non-coding upstream 55589 18301293 ~ 18302959 (-)
G150875 NA non-coding upstream 60505 18306209 ~ 18306443 (-)
G150891 NA non-coding upstream 92798 18338502 ~ 18338714 (-)
G150925 LOC108275437,LOC108436941,LOC107661438,LOC107696282,LOC107573699 non-coding upstream 127409 18373113 ~ 18376841 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other downstream 13626 18204651 ~ 18214487 (-)
LOC113529460 nrg4 other downstream 1169207 17053353 ~ 17058906 (-)
acsbg1 acsbg1 other downstream 1999779 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 2236019 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 2508538 15711993 ~ 15719575 (-)
etfbkmt etfbkmt other upstream 57438 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 58934 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 108270 18353974 ~ 18364036 (-)
G150991 LOC108436944 other upstream 179615 18425319 ~ 18428973 (-)
gatd1 pddc1,LOC102788149 other upstream 1046505 19292209 ~ 19295843 (-)

Expression


Co-expression Network