otud7a (otud7a,LOC108275340,LOC107715690,LOC107659507,LOC107752330,LOC107698115,LOC107550219,LOC107598848)


Basic Information

Item Value
gene id otud7a
gene name otud7a,LOC108275340,LOC107715690,LOC107659507,LOC107752330,LOC107698115,LOC107550219,LOC107598848
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16325942 ~ 16362375 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919384.2
agagtgtgtgtgagtgagtgtatgtgtgtgaggaacAGCCTCTGGATATAACCATGGTGGTGAGGTGGCTGCTGAAGACGTCCCACTAAAAAAACCACAAACGAACTGAAAATGAGAGCGTGAAGCTCTGGCTACCACGAAGGCCACTGCTGCAGGCTGGACAGCGCAGccacatgatcacatgactcTGGACATGGACGCGGTCCTGTCAGACTTTGTTCGGTCCACAGGGGCAGAACCTGGTCTGGCACGTGACCTGCTGGAGGGTAAAAACTGGGACTTGAGTGCTGCTCTGAGTGATTATGAGCAGCTGCGGCAGGTCCACACTGCCAACCTGCCTCAGGTATTTAATGAGGGCCGTTACTACAAGCAGCCAGAGCGCAGTGGAACCCCCCAGCACCTCAACAAGCTGGAGCAATGCCTGCAGAGGCAAGAGGAGAACACTCAGGAGAAGCGTCTCTCTCGGGGCATCTCACACGCCAGCTCTGCCATCATGTCCCTGGCGAGGATGCACGTGACGGGCGAGTGCACCAGGGAGCAGTTGCCTCTCGAGATGCCCATCTACACCTTCCAACTACCTGACCTGAGTGTATACAGTGAGGATTTCCGCAACTTCATCGAGCGCGACCTCATTGAGCAATCCACCATGGTGGCACTGGAGCAGGCAGGCCGTCTGAACTGGTGGTCCACTATATGTACGAGCTGTAAGAAGCTCCTGCCATTAGCAACTACTGGGGATGGCAACTGCCTACTGCATGCCGCTTCCTTAGgAATGTGGGGCTTCCACGACCGCGATCTGGTGCTGAGGAAGAGTCTGTATGCTATGATGAAAAGcggggcagagagagaggctCTGAAGAGGAGGTGGAGATGGCAGCAGACACAGCAAAACAAAGAGTCAGGGTTGGTGTATACAGAggaagagtgggagagagagtggAATGAACTGCTGAAGTTGGCCTCCAGTGAGCCTCGTACACACATCAGCAAAAATGGCAACACCAGTGGAGGTGTGGATAATTCAGAGGACCCTGTCTATGAGAGTCTGGAGGAGTTCCACGTGTTTGTGTTGGCTCATGTGCTGAGGAGGCCCATCGTGGTGGTGGCTGACACTATGCTCCGAGACTCTGGGGGAGAAGcttttGCACCAATCCCCTTTGGAGGCCTCTACCTGCCCCTGGAGGTGCCACCCAACCGATGCCACTGCTCTCCACTGGTGCTGGCATATGACCAGGCTCACTTCTCTGCACTGGTCTCTATGGAGCAGAGAGACCAGCAGAGAGAGCAAGCCGTCATCCCTCTGACAGACTCCGAGCACAAGCTTTTAGCCCTGCACTTTGCGGTGGACCCGGGCAGAGACTGGGAGTGGGGGAGGGACGACAACGACAATGCCAAACTGGCCAAtcttATCCTCTCACTGGAAGCAAAGCTAAACCTCCTACACAGTTATATGAATGTAACATGGATTCGAATACCATCAGAGACACGAGCTCCACTTGCTCAACCCGAGTCACCCACCGCATCAGCAGGTGAAGATGTGCAGTCTCTGGCCGAATCTATGGACTCGGACCGTGAGTCTGTCTGCAGCAATTCCAACCTCAACAATGGCAAGAGTagcaaagagaaagacaaagacaagcAGCACAAGGAGAAAGACAAAGCTCGTGCTGACTCAGTAGCCAACAAGCTGGGCAGCTTCAGCAAGACTCTAGGCATCAAGCTGAAGAAGAACATGGGTGGCCTGGGTGGTCTGGTACATGGCAAAATCAGCAGGTCCACCATAACGAATGGCCGTGCTGTGGAGAGCAGTGAACAGAAGCCAAAGAAGAAGGACTCCAAAACACGCAAAGGGAGCAAAGAGGAGTCGGGCCAATCTACCAGCACGTCATCCTCTGAGAAAGCAACCAGCCCATCTCCTACTGACAGAGTTTCAGGTAACTCCTCTGGAGAAAGGCAGGCCAGTTCAGGCAAAAACCCAGATGAGCGGACTCTGGACAACTGGAAGTACAGCACAGATGTCAAGCTGAGCCTGAACATCCTTCGTGCAGCCATGCAGGGCGAGCGTAAGTTCATCTTTGCCGGTCTATTGCTGACCAGCCACCGGCATCAATTCCATGAAGAGATGATCAGCTACTACTTGAGCAGTGCACAGGAGCGCTTCAGCACTGAACAGGAACAAAAGAGGAAGGCTGAGGCTGAGAAAAAGCCCCAGACCAACGGCGCCCTCAAGAAGCCTGAACAGGAGAGCACATTTCAGAGAGAGCGCTCGGACAGCTCTCCTCCCGAGAGTTGCTCACCTGTTCTGCATCCCAGCCATATCCATACACTAAAGGGCCAGGGGAGGAATAGCCCTACCCTTGCTGCTTCCCCAATTCCCATCCCTAATGCCAACCCAACTTCAGTCCCATGCTCGTCCATGTCACCCATCCCCTTCTCCTCCCCCAGTCAAGGTGCTAAGAGACAGGAACCTATCCCTGTGTCTGCCCACTATAGCCATACGCCACCTATCCAGAGGCACAGCGTTATCCACCTGAGAGATAGCAACCCGCAGTCCTCCAGCTACCAGGATGAGCCCTATAAAATTCCAGTGGGGACACTGAAGACCTGTGCCACGTATCCGCAACAGAACCGCTCACTGTCCTCTCAGAGCTATAGCCCAGCACGCATGTCTGGGATTCGCGCCGTCCATGGCGGAGATTCTATGCCATACAGCATGGCCGGTGAGCACAAATCCCACACCTACACCAATGGCTTTAATGCAAGCCATATCCGGGACAGTCTGGAGTTTGCTGACGAGGAGCTAACGCCCCACTCATGGCTCAACCATGACAAATCCAAGCTCCGCAGTGGAACCTGCCCCATGTACTGCTTTCAGCAGAAGCGCTGCAAGAGGGAGAACTGCTCCTTTTATGGCAGGCCAGAGACAGAGAACTACTGCTCCTACTGCTACAGAGAGGAGCTAAAACGCAGGGAAAGGGAGGGCAAAGGACACCGGCCTGGATAGCCtcgctcatacacacacatgcagttcaacactgatgtgtgtgtgcgattaaAAGACAGCAGTGACATCACCACCCTCTGCACTATGCGAGTAATAGACAAATACTGGCATACTGTTTTCTAATCTATTTAAGAATGATCTCCTTGTAATCTTGTTACTTTTCTCTCAATAGCAAATTGACACTGCAGTTTACAGCTTTGGCCAGAGATTGTGctgtcattttatttgtcaGTTTGTCTTTTGTCCAAATTCACATTCTTTTACTTGTTCTAGAGTAAAAGCTCATGTCTGTGCATTTTGCTCAGTCTGTAATATAAAATTTCTAGTACTAGCTGAAAGAGATGTAAAAGCATATGTCAGTCTCCTCTGAGCTCTCCAAAAGCTACTGGGTAACTCATTTGAATGCAATACTTCAATCAATATCTCAATAGCAAGTAACATCTTTCTGCTTTGGAAATAATTCAAATGGGAGGAACAACCACTGATAAACATGgaagtttttaaaaagcaataagTTTGGTAATGAGTGCAGTCCCTCCCCTTTTTATCTATGCATTCTTAATGTCAGCCATAGTGTATTGTCTTTGTGCAGAAATGAGTGTGATTTTATCTGCCTGGATGTAAGAAGATTGTACTGAAATTTCATTTGTGGCAAATCAAAGTGTGCTGCATGCTATGTAACATGCTTTTGATTGTGCAGCACATGACTGGACCTTGTGTACATCGGTTTGCATTCCATTTAAACTCTCCTCGGTACCATCAGATGCAGTACAGTGCCATTTATTCCTATCTGTGTTTTGCAATATATCACATTCTTGGTAGCAAATGGcttctgtaaaataaactaCTACTACTCGTGACAAATTTATACAATGcaagagtaacaatataatgGAATACAAACCTTTATACACCTTTATAGTGTAGTGAACTAAAAGTGAAAGCAAATGGAACTCTGTGATGTTTGTCAATGTTGGTTCCACCCTGGTGTTTTGTAGGTATAGTGCCTGTTGCTCATCATTTGTTCTGTAAcccacaagcacacacatgccAGTCTATCAGCAGACCCACCTGCATTTGCCCTAAAAAAATCTGTGCCAAAAACATTCTCCTATATTTGAAATTCTCAGGTATTATGTTAAATGTGTATATTACTATAATCCCCAAATTGAATCACTAAATTCAAAATTGAACATCACTTTTAGCATATTATAACAAAGTTGgatttaaaataacaattaacaaGTAGGAGTGGCTTGTGACCATAGgttttggtggggcaggacaacattaataacaacatagcctcaaacaaaattaaatcacACTTGACTACAAGCTACTatctagtgatttttttttttttttggattaacCCCATAATGGGCAAACGAGAGTCAACAAGACGTGAATGAACTTGAACAAACTAAGTATGGTTATGATGGTTTCTGTTTGCTGATAATTGCTCTCCAAAGACACATTAACAACTTAGCTAGATATGTAGATAGCTAGATTAAACTTGCTAATCAAATCATTTCTAATCAGGGAAAGGACTGAAAACTATGGACTAAAAGATGGCAGTGTTCATTTTGAAAActtatgtttaaattaattttttttaaagaaattcagCTCAgtttgatacagcaggtgtAGTTCCTGTTGCCATTGTCACAGTgtgagacaaacacagaaggagtaatatcattaactgtcctgtctgctgctcctccccCACTCATAAACAATGTATTCATAGAGTAAGCATGGGGCAGAGTGATTGCTGCCCCAATGGGTGTCAGTTTGCGCTTGTTGTAGTTACCTTTTTTGACCACtatgtgcaataataactctttggagctaaatggggcacTGAGCACACTGCTCAAAGATTGCAACacatctagaaaggtgagcaaatTAATGGAACATGAGCCTATATCTGTCAAaagcatcattttttaaattgttggtcactcaaaagaggtcaTTATTATTGCAAGATTAACATCCGTTGCAAAAGATATATTTGACTTGGCTCTGCCCCACCTGCCTCTATGGATGAGCCGCCACCGTTAACAAGACATAATTAACAGCAGCAATGGTGTTATGTATGTTATACATTATGGCAGATAGCCACATCATAGCAGGCGTCTTGTAACTCTAAAACTTGCTTTGTGTACTAGGACGGCCTTGATTCCTCTGCCATTCAAAGCACCAGAAGGCCTGACCGTATCATTATTGCTAACCCCTGTGTGACCATGGGTAAAGCTAAGTCTTCTCTTAGTGCTTCTCTTCTTCAGGCAAGTGACGAATGTGAGAGCATTACTCACtgctttgtggtgtgtgttgtaatATTGAATAACCCTGCACAGTCTAACGCtcagtgtgtctgtctctcctggATCGTGTGTTCTGCCCACTGAGTTTTCTTGCTCCTTCCTTCTTAGTGCCCTCCGCTTCCTAATTTCTGTGTGACAGAATCATGGACTTTCACTGTCTTAGAAttgtaaaatatgattttatattcatttgacagttttacattaaattattaatttgcaCATTAGGTACTGATGTAAATAGTaggaggaaacaggaaaagaacaaaacaagatGAGTTTGTTGTTAACACTGTTGTCTGTGCCTTCTCTTTGTTATATGAAAGTATGGcagagtgtgtgggtgtttatgtgtatgtttttctgtgtgtatgtgcgtgtcaTTATCCTCAGTGTCCTGTAATTTGAGCtatgacaagctgtggtttcAGTCAATATAAGAGCCAAGATTAGACTGTCTGCTTGCTCACATAATTGATCACATGGAGTGAAAATAGACCGTAGACAGCAGTATACACCCAATGCATTTTGACCCATAATCCTGCAGTATTTCAGTTCAAGCCTGACAGCTACAGATAGAAAATTACACTCAGCAGCTGTCTTACAGGTCACCTGTCTCACAACTGCCCTGTGGCTCAGCAGCTGACAATAAACTCTTTTCTCCATGTCACGTTGTGCACATAAACCCACATTCCATACATGCATATGGAAAACATGGATGGATTGGAATTTAAGACCCGAAGCTAAATTATACCGTATAGTATAGTATCTTTGTTCTGAAATGCACCCTTGCTTTTGCATGAGGGCCTTCATTTGGAAACTTGGGTTTTATTACTTGTTTCGCATGCTAATATGCTAACTCAGAATTTAGTAGAAGAACCAGAATAACAGGAGCTTAATGCACTCACATTACCAAACACAAAAGTTTGTTTGCGTGCAAAGATATTTAGTGTCTTTAAATAACATTGTGTTTtaccatgtttaaaaaaacagtacacACATAAGTATGCACAGACAGAAACATCAGTCATTGTCTGTGGTTTCATGGCATGCTGCTATTATACTCTGTAAGGCAGCAGTCCAATGTTTTAACAGCATTTTATCTCATGGTTCAAGAGAGACAGCGAATTACTCaatcatcattatcataatcGGCTTAACACTGAGCGACCTCACCATCACCTCTTACTCATTAAGGGTTTTGTAAGGGCTTTAAGTGGTCTGTCTTATCCATACAACCACTAATATAGACACAACACAGGTTTCCATAGCAGGGAAGACACTtatgatataatgcattactGATAGTGGGAGGCTACCTTGAGTATGTGCTTGATAGAGTGCTTATGACATGTTAGCACAAAAGACTTGATTGTACATACCCACTATTTGAAacgaacagataatgtgttctaaactaatacaaatacagatatgaataggtgGCGCGCTATATTCGCATCTGGTTGTGACTAGCGCTGTGCATCCTGtgggacacaacaaaaaaattgcGCAAGAgggagtttttattttcatgttgatAAGGGGTCAGATATGAAACTTGTGGGCATGATCAAGCAGTGAGATATGAAGCTttcaggacaaagaaagactaCATTCACTAACATGAAGTATGCATTTACAGCAATgtatttacagtgttcattcattcatccttagtaactgcctgatcaaggtcataatgttttaaaattggctgctggtttgtttatattttgggaaccCAACAAAATTTGGTAGAAAATATCATGGACAGGAACAAACATAAAGAAAAACTGCAcaagtgggatttaaaaaaaaaaa

Function

symbol description
otud7a Predicted to enable DNA binding activity; thiol-dependent deubiquitinase; and zinc ion binding activity. Predicted to act upstream of or within proteolysis. Predicted to be located in cytoplasm and nucleus.

NR:

description
PREDICTED: HMG domain-containing protein 3 isoform X1

GO: NA

KEGG:

id description
K11860 OTUD7A_B; OTU domain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919384.2 True 7170 mRNA 0.45 12 16325942 16362375

Neighbor

gene id symbol gene type direction distance location
trpm1b LOC108274564,LOC108433637,LOC107585966,LOC107750517 coding downstream 57956 16265562 ~ 16267986 (-)
LOC113529693 LOC108274564,LOC108433637,LOC108441836,LOC107750517 coding downstream 63003 16256510 ~ 16262939 (-)
LOC113530180 LOC108274564 coding downstream 71446 16251344 ~ 16254496 (-)
rps27l rps27l,zgc:136826,LOC107598918,LOC107752326 coding downstream 87785 16236143 ~ 16238157 (-)
cib2 cib2,LOC103027299,LOC107752320,LOC107573330,LOC104917862 coding downstream 126827 16180917 ~ 16199115 (-)
bnip2 bnip2 coding upstream 81080 16443455 ~ 16458395 (-)
anxa2a anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175 coding upstream 178477 16540852 ~ 16546270 (-)
ice2 ice2 coding upstream 184950 16547325 ~ 16566002 (-)
roraa rora,roraa,LOC108433630,LOC106561150,LOC107703215,LOC106573506 coding upstream 204920 16567295 ~ 16800368 (-)
LOC113530224 NA coding upstream 390801 16753176 ~ 16753281 (-)
G149632 klf13,znf746,LOC108274922,LOC107550220,LOC107598847,LOC107752329 non-coding downstream 8016 16309890 ~ 16317926 (-)
G149649 NA non-coding downstream 70456 16254647 ~ 16255486 (-)
G149643 NA non-coding downstream 74857 16249161 ~ 16251085 (-)
G149631 rps27l,zgc:136826,LOC107598918,LOC107752326 non-coding downstream 87834 16180906 ~ 16238108 (-)
LOC117597941 NA non-coding downstream 94133 16230614 ~ 16231809 (-)
G149718 NA non-coding upstream 60291 16422666 ~ 16424604 (-)
G149836 NA non-coding upstream 98416 16460791 ~ 16461045 (-)
G149841 NA non-coding upstream 133796 16496171 ~ 16498461 (-)
G149854 NA non-coding upstream 250609 16612984 ~ 16614416 (-)
G150089 NA non-coding upstream 656581 17018956 ~ 17019183 (-)
acsbg1 acsbg1 other downstream 97608 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 333848 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 606367 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 1096957 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 1237882 15086113 ~ 15088060 (-)
LOC113529460 nrg4 other upstream 690978 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 1842276 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 1940767 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 1942263 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 1991599 18353974 ~ 18364036 (-)

Expression


Co-expression Network