rab8b (rab8b,LOC108433638,LOC107598845,LOC107550224,LOC107752325,LOC107659505)


Basic Information

Item Value
gene id rab8b
gene name rab8b,LOC108433638,LOC107598845,LOC107550224,LOC107752325,LOC107659505
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16242248 ~ 16251075 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919443.2
gcgaagccccgccccctcatcCTGTCCTGCATGAATTAGTGTCAGTGGTATGGCCAAGAGGCACACTGCGATCAGATATTCACAATAGGAGCTCCGGCGTGGCAAATGGCTAAAACCTACGATTACCTCTTCAAGCTCTTGCTCATAGGAGACAGCGGAGTGGGAAAGACGTGTCTTCTGTTCCGCTTCAGCGAGGACGCGTTCAACACCACCTTCATCTCTACCATCGGAATTGACTTCAAAATCAGGACTATAGAGttaaatggaaagaaaatcaAACTCCAGATATGGGACACAGCAGGACAGGAGAGATTTAGGACCATCACTACGGCATACTACAGAGGAGCAATGGGCATTATGTTAGTGTACGATATTACTAGTGAAAAGTCCTTTGAAAACATCAAGAACTGGATTCGCAACATTGAGGAGCATGCATCGTCAGATGTAGAGCGGATGATCCTCGGAAATAAATGTGACATGAACGACAAGAGACAGGTGTctaaggagagaggagagaagTTGGCAATAGATTATGGAATCAAGTTTTTAGAAACCAGCGCAAAAACTAGCATAAATGTGGAAGAAGCCTTTTTCACCTTAGCGAGAGACATTATGGCCAGACTCAACAGGAAAATGAATGATGGCAGCAATTCAGAAGGTGGGGCACCAATTAAGATCACAGAGAAGCGTTCCAAGAAGCACAGCATATTCAGGTGCACACTCATATAATGGACTCTAGCGATTGGAATGCAACTATGGACTTGATCTCTCTAGCTGCAGAATCAGCTGGTATGGAAGGTCATGTGAACCTCTACTGAGAGGCGTGCACTCACGTTCTTAATGAACAGGGAGACTCCTGTTCATACAGACCAACCGGCGAGTTGGCACAAAGGATACTGGAGGGGTTTGAAGTACCTAGTTTGTGAAATGTCTTATTGTTTCTTTTGGCCTTTTTGTGATTATCACGGCACATGTTTTGGTTTGactgtcaattttttttataatatcaAAGCTTGAATTATTCCTTTTATAGAGcctttattcatattttataaagcTTTTATAAGCATAACAGTGTTACACTGTCATTACACATTGTTTATGGGCAGATGATTATCTGTAAAATCTATAGTATGGCTAGCAAATTGTGTATAATTAAAGGGCacctttaaagatttaaaaggaGGTGGAATtagaatatacatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataggaaaATGTCTCTGGGTTTGTCTCACAGGCACATAACCATGTATAGCACTGACAGAGATCCTGCACTCCCCTGCAATGTGGAGAATCAAATATAGAACATGACAGCTGAAGAGCATGATGGGTAAAAGTACACATGTACAGTCTGTCCATGTGTCTGTAAAGCAGCAGCCAATCAAAACAGAGACATGACGTATATAGCACACATGTTAGGCCAGGGGTCCCAGCTGTGGTCCTGTCTGTTTGACAGTCCAACACAGCTTGCTGATTTTCCTGTTGAAAGACACCCAATTGGACTTATCAGTTAATGAAGTCATCGTGTGAAAGcagggaaatcaccaaactgtgctgGACTTTGGTCCTGCATGCTAAGAAGGGTAGCGTTATTTACATGTATCTCTGTTTAATTAATTCACCTTAAAAAACATCTTGTGTGATTGGCAAAGGTTTGCATGTTTGATATTGACTTTTGAGGAATGAtttaaaatatctgtatatgAATGTATAGGAAAGCCACTAATGCATGCTTTTATTGTTGTATGTATAATGTGCTATTAATTTTACATGTTGGCATTCTTGCTGCTATGTATATTAACAAAATACCACCTATTCttattgctgtttttaaaaGCCCAAAGTACTTTTGGTTTACACATGTCATAACCTGTGATCTCTATTACTAGTAGCTCTTTGAAGGCAAATACAATTATCAAATAGGCAGTtatgtgttgctgtgtgttgtgtgtctgtttgtgtttgggtgaaTTCATGTCAATATCTACGTATTCTGTACCCAGTTACATGGCATAAGTAGCATTTATTTCACTGGTGCCAATGCTCTTAATGTAGTTGAAATTTGAGGTTGAGTGTGTGCAAATAGACAGTATCGAAGTGTTTCAGTTGCACTAATGTTTCAGAAGAAGGAAAGCTTCAAAAATAGTCTGACAGATCGAGTCAGCAATAAAATGTTCTTgctaagttttttttgtttcctctttCCAGCCCAAGACTTGAGGCCTTGGAAAAGCCTGTACAAGAGTCAGTGTTTTACTCTCTCAGAAACTGCAGTAGCAACTCTTGCTTTAGCGCTTACCATAAAATACAAGCAAATGTAGCATTATTATTCCAGCCTTGGTGTTCAGAAGGGACCATTGTGATCAGTGTGATCAAAGGCCATACATTTCTGCAGCTGTCTTCTGAGTTTATTGGTCTTTGTGATTGTTCAATGTACTGCCATCTATCAGTTCAGAAAGGAAATGTTTCTTAAACAGCCTGCTCATCTGGTAGgcaaataattgt

Function

symbol description
rab8b Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within regulation of canonical Wnt signaling pathway. Predicted to be active in cytoplasmic vesicle and plasma membrane. Is expressed in brain; central nervous system; midbrain hindbrain boundary; otic placode; and otic vesicle. Orthologous to human RAB8B (RAB8B, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-8B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07902 RAB8B; Ras-related protein Rab-8B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919443.2 True 2556 mRNA 0.40 7 16242248 16251075

Neighbor

gene id symbol gene type direction distance location
dnaja dnaja4,LOC107550212,LOC107698158,LOC107752324,LOC107598844,LOC107659503,LOC107715738 coding upstream 6867 16231335 ~ 16235381 (+)
idh3a idh3a,LOC107757767,LOC107659502 coding upstream 22614 16209778 ~ 16219634 (+)
lrrc61 lrrc61,LOC107752319,LOC107598843 coding upstream 35798 16202775 ~ 16206450 (+)
si:ch211-112g6.4 sh2d7 coding upstream 67414 16170244 ~ 16174834 (+)
LOC113529940 LOC108275177 coding upstream 136101 16093072 ~ 16106147 (+)
klf13 znf467,klf13,znf746,LOC108274922,LOC107598847,LOC107550220 coding downstream 45518 16296593 ~ 16311059 (+)
LOC113529796 LOC108275431,LOC108433634,LOC108274563 coding downstream 149767 16400842 ~ 16421690 (+)
gcnt3 NA coding downstream 171548 16422623 ~ 16424388 (+)
foxb1a foxb1,LOC103353681 coding downstream 247449 16498524 ~ 16500108 (+)
tln2b tln2,LOC108433629,LOC107659514,LOC107703225,LOC107739102 coding downstream 644635 16895710 ~ 17011850 (+)
G149428 NA non-coding upstream 214229 16027607 ~ 16028019 (+)
G149427 NA non-coding upstream 215736 16024844 ~ 16026512 (+)
G149276 NA non-coding upstream 423880 15771838 ~ 15818368 (+)
G149268 NA non-coding upstream 487336 15754665 ~ 15754912 (+)
G149248 NA non-coding upstream 530331 15711013 ~ 15711917 (+)
G149552 NA non-coding downstream 3609 16254684 ~ 16255314 (+)
G149574 NA non-coding downstream 77181 16328256 ~ 16328539 (+)
LOC117597940 NA non-coding downstream 87515 16338590 ~ 16341963 (+)
G149722 NA non-coding downstream 188631 16439706 ~ 16440054 (+)
G149723 NA non-coding downstream 194964 16446039 ~ 16449140 (+)
LOC113529564 ano9,LOC108442698 other upstream 419657 15807990 ~ 15822591 (+)
svip svip other upstream 517157 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 589564 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2412917 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2465377 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1583162 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 1931479 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2423935 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2470520 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2496752 18747827 ~ 18796259 (+)

Expression


Co-expression Network