slc22a21 (LOC108274582)


Basic Information

Item Value
gene id slc22a21
gene name LOC108274582
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 8243751 ~ 8272945 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919457.2
aaaaacacccgGCTTTTTTCTCACTGCTAAATATCCAAAATATCCTCTGTGCAGTTAAACCATGTGAAAGTTTGTAGCATGTTAAACGTTTCCTTTGCAAAGCTACGATTCTCTCTAACTGTGGGAAATTTCAACTGCATGCACAGTTCAAAGGCAACAGCAAAAGTTTATTTTGTATGggtgtattcccacagtgttcctgggataggatcCGGATCCAGCGTGAACGTGACCAGGATGAAGCGCTTACTGAAACTAACCTCCAGCACTCCTGCTGTTCAGAGAGTCATGGCATCTCTGGACTATGATGAAGTGACGGCGTTTCTAGGAGAATGGGGGCCTTTTCAGCTCAGCATCTTCATCCTGCTCAGCCTCAGCATTGTGCCGAACGGATACTCCGGCATGGCCATGGTCTTCCTCGCCGACACGCCGGACTTCCACTGCAGGTCGCCGCACCTGAACGGGAGCGCTGCTAACGCGAGCCGGGCGGAAGTGGAGAGCGCGGCACGCGACACCACCAGCGGCTGCGAGCAGCGCGTGAACGGCAGCAGCGAGCCGTGTGTGAGCGGGTGGGACTACAGCACCGAGCGCTACCACAACACTGTAGTCACTGAgTGGGACCTGGTTTGCGGAGATGCCTGGAAGGTTCCCTTCACGCTGTCCATCTTCTTCGTGGGAGTGCTGAGTGGGTCATTCATATCTGGAGAATTGTCTGACAGgtttgGACGTAAGACAGTCCTGTTTGCCACCATGGCCACTCAGCTGGTGTGCAGTCTGCTCCAGGTCGTCTCAGTCAGCTGGGAGATGTTTGCTGTTTTCTTCTGTCTTACTGGCTTCGGCCAGAACTCCAACTACATGGCGGCCTTTGTGTTAGgctctgAGCTGCTGGGGAAAAATTTGCGCCTGGCTTTTTCtgtgctgggtgtgtgtgtgttttatgcagTGGGTTACGCTCTCCTTCCACTATTTGCCTATTATTTGAGGAGTTGGAGGATCCTGCTAACAGCCCTGTCCCTGCCTGCACTACTTTACATCCCCCTCTGGTGGTTTATTCCAGAGTCTCCGCGCTGGCTGCTGTCTAAAGGCCGTGTCCAGGAAGCAGAGGACATCATCAGAGCAGCAGCGAGGCAAAACGGTATCACTCCACCTGAGGTTATATTCAAGGATTCACAACTGATTATATCTGAGtCCGAAAGTTCTGATGTCTCTTACACATACATGGACCTGATCAGGACTCCAAAGATGAGGAGTGTAACTCTGTTGAACAGTGTTGTATGgtTCACAATCACCATCAGCTACTTTGGCCTGTGTCTGAGCACTCCTAACATGAACGGAGACCCGTATCTGAACTGCCTGTTCTCAGCACTGACCGAGGTGGCGGCATACGTGCTGACGTGGCTCCTGATCAAGGTGGTGCCGAGGCGAGCGCTCATTACAGGTCCACTGCTGAGCGGTGGCCTCGTCCTGCTGCTTATCCCGGCCGTCCCTCCAGATTACGGCAGTCTGACAGTGGTGCTGGCCATGGTGGGGAAGCTCGGGGTCACAGCAGCTTTCTCTGTCCTCTACATCTCGACAGCGGAGCAGTTCCCCACAGTGGTGCGCGGGATGGGGATGGGAATCTGCAGCATGTGCTCGAAGATTGGCAGCACCATCTCTCCATTTTTCCCCTACTTCGgtcATTATGATCAGGTTCTGCCCTACATTCTGATGGGAGTGCTGACGCTAATTGCTGGGCTGCTGAGTATTCTGATGCCAGAGACACGAGGCATTCCCCTCCCCGAGGCCATCTCACAAGTACAGAGTCTAAACTGGTGCTGTGGCTGGTGTAGAAATCGTCGgagaacagaaaaaacacatgAGGGTCTGGCAACAAAGATGTGATCTGAGAATCCCAGTGCAGCAACGTGCACTTTCTGATACTTGACCTTAATACAAATGCCATTTCATGTAGTATACTAAGTAGGTTTACACTACCATTGatcaaaattttttattttatcagcatttttatttgtcagatTGCAGAGTGATTTGTCAGCTGTTTTAGTCATTTGTTCACAGATTtgcacatttataaatatattcatatataattatgcaaatgtttttaaagagtATAATTCGaacatttttttgtatgtgtatatatttttattgtgctGGTGtcatgtggaaacactgattaCATAAATAGACACATTGATAACATTAATCAATACTACAAATGAAGTCATACCCTGAGATCTATAATAGTGTCATAAGCACTGAGTTTAACTACTTCAGGGTCGAGTTTGTGTTGACAGAAATATACCTAGAGGACTTCTGACTACCTGAGCCTGCTGCGTCCAGAGTTTAATATTCCTGTAATAAATATCAGAAGGCCTTAGAATGATATACTaataatgattttatgtatGACCGTAAATACTTAAAGGAACATTCTGATGAAAAGTAAATTTACAGTTTCCTA

Function

NR:

description
solute carrier family 22 member 5-like isoform X1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K08202 SLC22A4_5, OCTN; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919457.2 True 2470 mRNA 0.48 12 8243751 8272945

Neighbor

gene id symbol gene type direction distance location
trappc11 trappc11,LOC107731725,LOC107559294,LOC107758539,LOC107660171 coding upstream 2098 8221195 ~ 8241653 (+)
dnd1 dnd1 coding upstream 38804 8192151 ~ 8204947 (+)
trnaa-agc_11 NA coding upstream 199341 8044338 ~ 8044410 (+)
trnaa-agc_10 NA coding upstream 201444 8042235 ~ 8042307 (+)
trnaa-agc_8 NA coding upstream 204080 8039599 ~ 8039671 (+)
stox2b stox2b,LOC108274926,LOC108430995,LOC107758540,LOC107680916,LOC107731726 coding downstream 1466 8274411 ~ 8338474 (+)
acsl1b LOC108274927,LOC108430994,LOC107758469,LOC107552354 coding downstream 69112 8342057 ~ 8363104 (+)
LOC113530022 LOC108274535,LOC108430945,LOC103027224,LOC107715168,LOC107678618,LOC101073614 coding downstream 109326 8382271 ~ 8399322 (+)
rgs14a LOC108275341 coding downstream 139090 8412035 ~ 8433940 (+)
slc34a1a slc34a1,LOC108430989 coding downstream 177436 8450381 ~ 8475004 (+)
G144929 NA non-coding upstream 30375 8208868 ~ 8213376 (+)
G144903 NA non-coding upstream 129206 8113661 ~ 8114545 (+)
G144891 NA non-coding upstream 200454 8043095 ~ 8043297 (+)
G144782 NA non-coding upstream 225669 8015660 ~ 8018082 (+)
G144726 NA non-coding upstream 538988 7704081 ~ 7704763 (+)
G144978 NA non-coding downstream 106023 8378968 ~ 8380517 (+)
LOC113530050 NA non-coding downstream 163422 8436367 ~ 8444838 (+)
G144991 NA non-coding downstream 173789 8446734 ~ 8446948 (+)
G145113 NA non-coding downstream 282360 8555305 ~ 8555536 (+)
G145232 NA non-coding downstream 568121 8841066 ~ 8841359 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 777199 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 1287235 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 1290878 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 1292329 6951072 ~ 6951422 (+)
LOC117598156 NA other upstream 1444847 6796972 ~ 6798904 (+)
G145233 LOC107676291 other downstream 568531 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 2264306 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 2281421 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 3022183 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 3322554 11595499 ~ 11597970 (+)

Expression


Co-expression Network