ube2q2 (ube2q2,LOC108436947,LOC105015542,LOC107696278,LOC107661444)


Basic Information

Item Value
gene id ube2q2
gene name ube2q2,LOC108436947,LOC105015542,LOC107696278,LOC107661444
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18448142 ~ 18457983 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919483.2
tgagtgtgactgagtgaatgagtgagcaCTGGGCAGGTCAGGGACTACGTAGACAATTCACAGCAGACATTTACTAGAAACACGCACAGAGACTCTGACAGTTCACGCGAATGTCATCTTCATCCTCTGTGCTTCTGCAGTTAAGGCAGTCGACATTAGAAGTGAGCTGTTCTCTCTCCACCCCCTCTTCTGTTGCTCGGTGCAGAAACAGAGGCACTATCTCAGAGGGCTGCTGGTTGTTAGCTACCAGGTTAGCTGCTCGCCCGCTTCCCCTGCGGCCTGGCTGGAGATGAGTGGAAGATGTCCGTGTCGGGGCTCAAGGCCGAATTAAAGTTCTTGGAGTCAATTTTTGACCCGAATCACGAGCGTTTCAGAATTATAGACTGGAAACCCGACGAGCTTAGCTGTCAGTTTAATGTGACTGGTGAAAAGCTACTGATCATCCACTGCAATATTACGGAGGCTTACCCTTCAACTCCTCCTTTATGGTTTGTGGAGTCAGATGATCCAAGCCTGACTGAGGTATTTGAGCGCCTGGAGGATGTTCGGAAAGGCAGTACCTTGctcctccAGCAGTTGAAAAGACTTATCTGTGATCTTTGTCGACTGTATAACCTGCCCCAGCACCCTGACGTGGAGATGCTGGACCAGCCTCTTCCTGCTGGACCTATCAGTCATGAGAGAAAGCATGTAACAACAGATGAAGTAACAtctgatgaagaggaggaggaagaaatgACAGAGCAGGACATCGAAGATCTTGACCACTATGAGATGAAAGAGGAGGAACCTGTAGATGGCAAGAAGTCAGAAGATGATGGGATAGAAAAGGAGAACCTTGCTATACTAGAAAAAATCCGCAAGAACCAGAGGCAGGACCACTTGAACggTGCAGTGTCTGGCTCTGTTCAGGCGTCGGACCGTCTTATGAAGGAACTCAGGGAGATCTATAGATCACAGAGTTACAAGACAGGTATCTATTCAGTGGAGCTAGTCAATGACAGTCTTTATGAATGGCATGTCAAGTTGAGGACggTAGATCCAGATAGTCCATTACATAGTGACTTGCAGGtcttgaaagaaaaagaaggtgTCGACTATATTCTGCTCAACTTCTCTTATAAAGATAACTTTCCTTTTGACCCGCCATTTGTACGAGTAGTGTCTCCTGTACTCTCTGGAGGTTATGTTCTTGGAGGAGGGGCCTTGTGTATGGAACTACTAACAAAACAGGGCTGGAGCAGTGCCTATTCCATAGAGTCTGTCATTATGCAAATCAATGCCACCCTAGTCAAAGGGAAAGCTAGAGTACAGTTCGGAGCTAATAAGAACCAGTATAATCTTGCCAGAGCACAACAGTCATATAAGTCTTTGGTCCAGATCCATGAAAAGAATGGCTGGTACACACCTCCTAAAGAAGATggttaagaagaagaagacaaatgTTACTGAACACTGGGAATATGGGATTTGTGATAAactatttgcattttaattgttCTAAAATCCCTCAAAATGTTTCCTATTCAGCTGGAGTGTGAGGTCTCACTGGTCTGTTCCCCTTATTTCActctgtctccttctgtctgtcccCGTTTCTTGCTGTTATTAGTGTCTGCTCTCATCTCATGTTTTCTCCAATTCGCTACTGGGAAAGGAGAGATGTGTGAGAGGCACACAGCTGCGGTACTAATGCGTGTCTTACACAGAGCAATTAGAGGCCACCAgattcttgttgttgttttgtctgGAGCAAAGCATGACTTTGTTGGATTAACACCTGAATGGAAATAACGTGTGTGAAGTTTCTGGATTTTATTCCCATGCTCTTCTTTTAATGTAAGTTATTATGGCTATCATGTCAGATTTTGGCAGGGGTTTATTGAACTTCAGACAGAAATGGATGCAATAAGAGACAGTGAAGCTTTTCCACCTCTCTTCTACCTGCTGGCGCTGCTCTCTTCTTTATCTTTCGTGTTCTGTGTTAACATGTGCTGGTACATTTAATACtgatatagttttttttctttcattctttccctttttttttttttttttttaaaagtgagaTTAAGGTAAAGTATGGGACTTAGTCCAGTTCTCAACTTTGTTAACTGTGGATGAATACCACTCGGTGTCCTGTTTCCGGCTCTTAGCCTGTGGTTAACCTGAGTGGTATTTCACAAACACAGGCCTTAGAACAGGCAAATAAGAAAATGTCATTGTTCTACGGTTGGACAGAAACCTGCTTGTGTACTCCTAAATGGATATGTGGTGCAGGTCCTTTTTAATGTGCTGTTGATGTGAAGTCTTGGACTATGCCACAATATCCAGTTAAGACCTTGATCATAATATTTAATTGGATGTCTTGAGGATATTGAAAATGAAGAGCACCTAAACCTATGTTTATTCAGGGGTTTTGAAACATTCATCTTCTAATTCTGAAGGTGACAAGTTAtcattcctttatttgtttttcaaggTCATTTAATGCTGATAATTTCACCAGTTCATATTTctgtattagtttttttttttcttcctattcAGACACAATCAGGACATACTATGAAACAGTCACTGATGAGAAGGAATCATTGTctttatgctttttttccccacatagTGCTGCTTTAACATggtaattttgcattttattttgccaTTATCCAGAAAACCTTCAGGAAGTCTGTTAGACTGATGATATTACTGTGGTTAATACGATAAAACCAATGGGTTTAGTGTTTTTCATGCCAAAAAACTTTGTATTTTTAGCACTATCTACACATAAGCTGGTTTAATTGAAAGCGTATCATTTCTACAGATTTTACAACCAGGCATTACATGTTAGCTTACACTAATGAAGAATAAGTCTCTCTGttagttgtgttttgtttttaaccaaaGCACTCATCACTTTTCAGCATGTTTTGTGGTCAAAGTATAGCGTCTGTTAAGAGGAGATAATAGCAAGAATCATGGCTTGATTATGGTTATTTGTTATAGTTTCTTTCCCAACTTCATCACATCTTCTAGAATGATCATTTCTGTCTTAGGAAAGGGCCCAGAATATAACTGCTTGGCTCTTTTTTGCACAGAGTATTAAAAATGTGCCTCATAAATAACCATAAAGGAATGGAGTCATGTCCAGACTCTAAGCCAGTCACGAATACAGAAAAGCCATATGTAACACTGGCTTGCAGATCCATAAATCTGTGACATAAAAGCAACCTGTCATATGTAAATGTAGGTCAACAGAAGTATTAGGTAAGGTGTCTTGAAGCATATGATGGTGATTGCACTCTAAGAGTAGCACAGCTAAGCACCATTCATTCTTTAAATTGATGCTGTTCTCCAGGTTTTAGTCTTCACCGCAGGTTAGTCATTCTCTGTCAACCCATGCTTgctgtttgatttttaattaagtttAGAATTTAACACATCTGCACCTCTTAATCAGGATGTGCCTGGTTTCATGTAGTCTTCTGTTAGTAACATTATGTCCATTGTGCTCCCAAGTATGATTGGATCACAATAACttatttttctgaaatactgaccTCAGCTTAACTAATGATGGTGTTCTTTTTGGTGCCATCTCATGGTGGAATCATTCTTATGGCATGCGTTCAGGTTGTTCTTTTCCATTGCAAGAGAACTTTGATCATGTACAGTAAATTTTGTAAACTTGCATCAAGTTTATGAATAAAGAGTTTTACAAGGGTT
>XM_026919484.2
gtgtgactgagtgaatgagtgagcaCTGGGCAGGTCAGGGACTACGTAGACAATTCACAGCAGACATTTACTAGAAACACGCACAGAGACTCTGACAGTTCACGCGAATGTCATCTTCATCCTCTGTGCTTCTGCAGTTAAGGCAGTCGACATTAGAAGTGAGCTGTTCTCTCTCCACCCCCTCTTCTGTTGCTCGGTGCAGAAACAGAGGCACTATCTCAGAGGGCTGCTGGTTGTTAGCTACCAGGTTAGCTGCTCGCCCGCTTCCCCTGCGGCCTGGCTGGAGATGAGTGGAAGATGTCCGTGTCGGGGCTCAAGGCCGAATTAAAGTTCTTGGAGTCAATTTTTGACCCGAATCACGAGCGTTTCAGAATTATAGACTGGAAACCCGACGAGCTTAGCTGTCAGTTTAATGTGACTGGTGAAAAGCTACTGATCATCCACTGCAATATTACGGAGGCTTACCCTTCAACTCCTCCTTTATGGTTTGTGGAGTCAGATGATCCAAGCCTGACTGAGGTATTTGAGCGCCTGGAGGATGTTCGGAAAGGCAGTACCTTGctcctccAGCAGTTGAAAAGACTTATCTGTGATCTTTGTCGACTGTATAACCTGCCCCAGCACCCTGACGTGGAGATGCTGGACCAGCCTCTTCCTGCTGGACCTATCAGTCATGAGAGAAAGCATGTAACAACAGATGAAGTAACAtctgatgaagaggaggaggaagaaatgACAGAGGACATCGAAGATCTTGACCACTATGAGATGAAAGAGGAGGAACCTGTAGATGGCAAGAAGTCAGAAGATGATGGGATAGAAAAGGAGAACCTTGCTATACTAGAAAAAATCCGCAAGAACCAGAGGCAGGACCACTTGAACggTGCAGTGTCTGGCTCTGTTCAGGCGTCGGACCGTCTTATGAAGGAACTCAGGGAGATCTATAGATCACAGAGTTACAAGACAGGTATCTATTCAGTGGAGCTAGTCAATGACAGTCTTTATGAATGGCATGTCAAGTTGAGGACggTAGATCCAGATAGTCCATTACATAGTGACTTGCAGGtcttgaaagaaaaagaaggtgTCGACTATATTCTGCTCAACTTCTCTTATAAAGATAACTTTCCTTTTGACCCGCCATTTGTACGAGTAGTGTCTCCTGTACTCTCTGGAGGTTATGTTCTTGGAGGAGGGGCCTTGTGTATGGAACTACTAACAAAACAGGGCTGGAGCAGTGCCTATTCCATAGAGTCTGTCATTATGCAAATCAATGCCACCCTAGTCAAAGGGAAAGCTAGAGTACAGTTCGGAGCTAATAAGAACCAGTATAATCTTGCCAGAGCACAACAGTCATATAAGTCTTTGGTCCAGATCCATGAAAAGAATGGCTGGTACACACCTCCTAAAGAAGATggttaagaagaagaagacaaatgTTACTGAACACTGGGAATATGGGATTTGTGATAAactatttgcattttaattgttCTAAAATCCCTCAAAATGTTTCCTATTCAGCTGGAGTGTGAGGTCTCACTGGTCTGTTCCCCTTATTTCActctgtctccttctgtctgtcccCGTTTCTTGCTGTTATTAGTGTCTGCTCTCATCTCATGTTTTCTCCAATTCGCTACTGGGAAAGGAGAGATGTGTGAGAGGCACACAGCTGCGGTACTAATGCGTGTCTTACACAGAGCAATTAGAGGCCACCAgattcttgttgttgttttgtctgGAGCAAAGCATGACTTTGTTGGATTAACACCTGAATGGAAATAACGTGTGTGAAGTTTCTGGATTTTATTCCCATGCTCTTCTTTTAATGTAAGTTATTATGGCTATCATGTCAGATTTTGGCAGGGGTTTATTGAACTTCAGACAGAAATGGATGCAATAAGAGACAGTGAAGCTTTTCCACCTCTCTTCTACCTGCTGGCGCTGCTCTCTTCTTTATCTTTCGTGTTCTGTGTTAACATGTGCTGGTACATTTAATACtgatatagttttttttctttcattctttccctttttttttttttttttttaaaagtgagaTTAAGGTAAAGTATGGGACTTAGTCCAGTTCTCAACTTTGTTAACTGTGGATGAATACCACTCGGTGTCCTGTTTCCGGCTCTTAGCCTGTGGTTAACCTGAGTGGTATTTCACAAACACAGGCCTTAGAACAGGCAAATAAGAAAATGTCATTGTTCTACGGTTGGACAGAAACCTGCTTGTGTACTCCTAAATGGATATGTGGTGCAGGTCCTTTTTAATGTGCTGTTGATGTGAAGTCTTGGACTATGCCACAATATCCAGTTAAGACCTTGATCATAATATTTAATTGGATGTCTTGAGGATATTGAAAATGAAGAGCACCTAAACCTATGTTTATTCAGGGGTTTTGAAACATTCATCTTCTAATTCTGAAGGTGACAAGTTAtcattcctttatttgtttttcaaggTCATTTAATGCTGATAATTTCACCAGTTCATATTTctgtattagtttttttttttcttcctattcAGACACAATCAGGACATACTATGAAACAGTCACTGATGAGAAGGAATCATTGTctttatgctttttttccccacatagTGCTGCTTTAACATggtaattttgcattttattttgccaTTATCCAGAAAACCTTCAGGAAGTCTGTTAGACTGATGATATTACTGTGGTTAATACGATAAAACCAATGGGTTTAGTGTTTTTCATGCCAAAAAACTTTGTATTTTTAGCACTATCTACACATAAGCTGGTTTAATTGAAAGCGTATCATTTCTACAGATTTTACAACCAGGCATTACATGTTAGCTTACACTAATGAAGAATAAGTCTCTCTGttagttgtgttttgtttttaaccaaaGCACTCATCACTTTTCAGCATGTTTTGTGGTCAAAGTATAGCGTCTGTTAAGAGGAGATAATAGCAAGAATCATGGCTTGATTATGGTTATTTGTTATAGTTTCTTTCCCAACTTCATCACATCTTCTAGAATGATCATTTCTGTCTTAGGAAAGGGCCCAGAATATAACTGCTTGGCTCTTTTTTGCACAGAGTATTAAAAATGTGCCTCATAAATAACCATAAAGGAATGGAGTCATGTCCAGACTCTAAGCCAGTCACGAATACAGAAAAGCCATATGTAACACTGGCTTGCAGATCCATAAATCTGTGACATAAAAGCAACCTGTCATATGTAAATGTAGGTCAACAGAAGTATTAGGTAAGGTGTCTTGAAGCATATGATGGTGATTGCACTCTAAGAGTAGCACAGCTAAGCACCATTCATTCTTTAAATTGATGCTGTTCTCCAGGTTTTAGTCTTCACCGCAGGTTAGTCATTCTCTGTCAACCCATGCTTgctgtttgatttttaattaagtttAGAATTTAACACATCTGCACCTCTTAATCAGGATGTGCCTGGTTTCATGTAGTCTTCTGTTAGTAACATTATGTCCATTGTGCTCCCAAGTATGATTGGATCACAATAACttatttttctgaaatactgaccTCAGCTTAACTAATGATGGTGTTCTTTTTGGTGCCATCTCATGGTGGAATCATTCTTATGGCATGCGTTCAGGTTGTTCTTTTCCATTGCAAGAGAACTTTGATCATGTACAGTAAATTTTGTAAACTTGCATCAAGTTTATGAATAAAGAGTTTTACAAGGGTT

Function

symbol description
ube2q2 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein polyubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Orthologous to several human genes including UBE2Q2 (ubiquitin conjugating enzyme E2 Q2).

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 Q2-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10582 UBE2Q; ubiquitin-conjugating enzyme E2 Q

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919483.2 True 3726 mRNA 0.41 13 18448142 18457983
XM_026919484.2 False 3720 mRNA 0.41 13 18448142 18457980

Neighbor

gene id symbol gene type direction distance location
nptna LOC108274497,LOC108436943 coding downstream 27771 18404512 ~ 18420371 (-)
hcn4l hcn4,LOC108274590,LOC108436942,LOC107573709,LOC107696280,LOC102793391 coding downstream 49884 18378729 ~ 18398258 (-)
LOC113530128 LOC108275329,LOC108436939,LOC103046663,LOC100697142,LOC101479677,LOC107576348,LOC107716663 coding downstream 100495 18340453 ~ 18347647 (-)
arid3b LOC108275332,LOC108436938,LOC107575848,LOC107752332 coding downstream 109719 18318624 ~ 18338423 (-)
washc4 kiaa1033,si:dkey-23p11.2,LOC107696292,LOC107678984 coding downstream 202438 18228113 ~ 18245704 (-)
tafa5b fam19a5b,LOC108428378,LOC108274593,LOC103024527,LOC107696241,LOC107716636,LOC107753604,LOC107598818 coding upstream 76962 18534945 ~ 18552473 (-)
zcrb1 zcrb1 coding upstream 200552 18658535 ~ 18659614 (-)
LOC113529455 LOC108274993 coding upstream 250078 18708061 ~ 18713197 (-)
LOC117597890 NA coding upstream 268316 18726299 ~ 18729600 (-)
dbndd1 dbndd1,LOC108275320,LOC108428370,LOC107570651,LOC107723994,LOC107742629 coding upstream 313264 18771247 ~ 18774738 (-)
G150996 NA non-coding downstream 2954 18444891 ~ 18445188 (-)
G150989 NA non-coding downstream 24817 18422657 ~ 18423325 (-)
G150988 NA non-coding downstream 25498 18421493 ~ 18422644 (-)
G150925 LOC108275437,LOC108436941,LOC107661438,LOC107696282,LOC107573699 non-coding downstream 71301 18373113 ~ 18376841 (-)
G150891 NA non-coding downstream 109428 18338502 ~ 18338714 (-)
G151009 NA non-coding upstream 49793 18507776 ~ 18507976 (-)
G151026 NA non-coding upstream 128398 18586381 ~ 18587613 (-)
LOC117598005 NA non-coding upstream 177110 18635093 ~ 18637152 (-)
G151052 ticrr non-coding upstream 207609 18665592 ~ 18666007 (-)
G151171 NA non-coding upstream 246367 18704350 ~ 18782412 (-)
G150991 LOC108436944 other downstream 19169 18425319 ~ 18428973 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other downstream 84106 18353974 ~ 18364036 (-)
etfbkmt etfbkmt other downstream 142813 18303142 ~ 18305329 (-)
LOC113530223 NA other downstream 143341 18304638 ~ 18304801 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other downstream 233655 18204651 ~ 18214487 (-)
gatd1 pddc1,LOC102788149 other upstream 834226 19292209 ~ 19295843 (-)
zgc:114188 rps17,rs17,LOC107389132,LOC103042467,LOC108428414 other upstream 921673 19379656 ~ 19392962 (-)
LOC113530226 NA other upstream 929258 19387241 ~ 19387366 (-)
LOC113530227 NA other upstream 929786 19387769 ~ 19387895 (-)
LOC113530225 NA other upstream 933773 19391756 ~ 19391882 (-)

Expression


Co-expression Network