zcrb1 (zcrb1)


Basic Information

Item Value
gene id zcrb1
gene name zcrb1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18658535 ~ 18659614 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919499.2
CTCCAGGGGCGCGTAAGTAGTTCCGGTTCAAATATTGACAAAAATACGAAAACAGAGCAACGAATACTTCGGTGCAAAAATGAGTGGCGGTTTGGCTCCAAGTAAAAGTACTGTTTACATTTCCAACCTTCCGTTTTCGCTGACCAATAACGACTTGCACAAGTTATGCACGAAATATGGAAAAGTCGTAAAGGTGACAATTGTGAAAGACAAACAAACGCGGAAGAGTAAAGGTGTCGCGTTTGTGTTGTTCCTGGACAGAGAGTCAGCGCATAACTGTGCTCGGTCCCTGAACCACAAGGAGCTGTTCGGCAGGACGGTGAAGGCCAGCATCGCTATCGATAACGGAAGAGCTGCGGAATTCATCAGGAGGAGAAACTACACAGACAAGTCCAAGTGTTACGAGTGTGGCGAAGATGGTCACTTGAGCTACTCCTGCCCAAAGAATTTGCTCGGAGAAAGAGAGCCTCCACccaaaaaggagaagaagaagaagaagaagatgctGAAGCACACTGATGAGGTTGAGCCAGAGGAAAGCGATGATGAAGGAGAAGACCCTGCACTGGACAGTTTGAGCCAGGCCATTGCTTTCCAGCAAGCTCGAAtcgaagaagaagagagaagaaggaaGCAGAGCACAGGAGACTCGAGCCACACATCCACATCAGACAGCTCAAATAAACCCAGGATCAAGAAGAGCACATACTTCAGTGATGAGGAAGAGCTCAGTGACTGACGAACGTGATCCTATTCTGAAGATCTTCATTATCAGACATCAGTGGTTTAACTACTGGTTAAAACAGCCGTTGGAGCTTTCTTGAAGGCTTTTCAAGAACTTGCACTTGTCACTTGGTGTTTGGAAAGCTGCAGTAACTGATGCTTGATGAACAACCCCTTGATGTGATTGGAAAAGTTGTGGTCACTCTGTACAGCAATTCAGACAGTGTCTGTTAATTGTTTTACTCATTGTCTTTTACACTGTAAATAGTCAATAATCTCTAATAATTGGTACAGATGTTTACTGAATGATTCCATGATGTAACTGAATGCTAtgcaaataaagataaaatgttACCA

Function

symbol description
zcrb1 Predicted to enable RNA binding activity and zinc ion binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U12-type spliceosomal complex. Orthologous to human ZCRB1 (zinc finger CCHC-type and RNA binding motif containing 1).

NR:

description
zinc finger CCHC-type and RNA-binding motif-containing protein 1-like

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13154 ZCRB1; U11/U12 small nuclear ribonucleoprotein 31 kDa protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919499.2 True 1080 mRNA 0.44 1 18658535 18659614

Neighbor

gene id symbol gene type direction distance location
tafa5b fam19a5b,LOC108428378,LOC108274593,LOC103024527,LOC107696241,LOC107716636,LOC107753604,LOC107598818 coding downstream 106062 18534945 ~ 18552473 (-)
ube2q2 ube2q2,LOC108436947,LOC105015542,LOC107696278,LOC107661444 coding downstream 200552 18448142 ~ 18457983 (-)
nptna LOC108274497,LOC108436943 coding downstream 238164 18404512 ~ 18420371 (-)
hcn4l hcn4,LOC108274590,LOC108436942,LOC107573709,LOC107696280,LOC102793391 coding downstream 260277 18378729 ~ 18398258 (-)
LOC113530128 LOC108275329,LOC108436939,LOC103046663,LOC100697142,LOC101479677,LOC107576348,LOC107716663 coding downstream 310888 18340453 ~ 18347647 (-)
LOC113529455 LOC108274993 coding upstream 48447 18708061 ~ 18713197 (-)
LOC117597890 NA coding upstream 66685 18726299 ~ 18729600 (-)
dbndd1 dbndd1,LOC108275320,LOC108428370,LOC107570651,LOC107723994,LOC107742629 coding upstream 111633 18771247 ~ 18774738 (-)
mafb LOC108274756,LOC108428434,LOC101173775,LOC106513190,LOC107084340,LOC100702616 coding upstream 295613 18955227 ~ 19025035 (-)
ankrd27 ankrd27 coding upstream 421943 19081557 ~ 19106053 (-)
LOC117598005 NA non-coding downstream 21383 18635093 ~ 18637152 (-)
G151026 NA non-coding downstream 70922 18586381 ~ 18587613 (-)
G151009 NA non-coding downstream 150559 18507776 ~ 18507976 (-)
G150996 NA non-coding downstream 213347 18444891 ~ 18445188 (-)
G150989 NA non-coding downstream 235210 18422657 ~ 18423325 (-)
G151052 ticrr non-coding upstream 5978 18665592 ~ 18666007 (-)
G151171 NA non-coding upstream 44736 18704350 ~ 18782412 (-)
G151181 ciapin1 non-coding upstream 95130 18754744 ~ 18757515 (-)
G151329 NA non-coding upstream 343667 19003281 ~ 19003567 (-)
G151351 NA non-coding upstream 466500 19126114 ~ 19127238 (-)
G150991 LOC108436944 other downstream 229562 18425319 ~ 18428973 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other downstream 294499 18353974 ~ 18364036 (-)
etfbkmt etfbkmt other downstream 353206 18303142 ~ 18305329 (-)
LOC113530223 NA other downstream 353734 18304638 ~ 18304801 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other downstream 444048 18204651 ~ 18214487 (-)
gatd1 pddc1,LOC102788149 other upstream 632595 19292209 ~ 19295843 (-)
zgc:114188 rps17,rs17,LOC107389132,LOC103042467,LOC108428414 other upstream 720042 19379656 ~ 19392962 (-)
LOC113530226 NA other upstream 727627 19387241 ~ 19387366 (-)
LOC113530227 NA other upstream 728155 19387769 ~ 19387895 (-)
LOC113530225 NA other upstream 732142 19391756 ~ 19391882 (-)

Expression


Co-expression Network