commd4 (commd4,LOC107576274,LOC107757759,LOC107598913)



Basic Information


Item Value
gene id commd4
gene name commd4,LOC107576274,LOC107757759,LOC107598913
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16005670 ~ 16008823 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026919523.2
agctcacTTTGTGGACTAGCCGTTCCTGCTAAATCAAGTCTGTCTGTAGTAATCGATGATAATTTTCAAATTATTCTGGATTTTCAAAAATGTAGCCGGTATGAGCGTGTTCACTGGGATCCCGTTAGAAGGAAAAAACCTTTAGGGGGCGGTGTAGGGAACATGGTGGCTACGAGCCGGGGCTAACAGACGAAGAAGAGCGCCTGCGCAGCTGACTGCAAGATAATATGcggTTCCGATTTTGTGGTGATTTGGACTGCCCGGACTGGGTCTTAGCAGAAATCAGCACTTTAGCACGAATATCAAGCGTCAAGATGAAACTTCTGTGTGTGCAAGTCATAAAAGACATCCTCGATGAAGGCATTGATTATGACAAGGTGGCAAAACTAACCTCTGATGCAAAATTTGAGAGTGGAGATATTAAAGCCAGTGTCGCCGTACTGAGTTTTATCCTTTCCAGTGCAGCAAAGCATGATGTTGATAGTGAATCTCTATCCAGTGAACTTCAGCAGCTGGGCTTGCCTAAAGAGCACACAACAGGACTGTGTAAATCTTatgaagacaaacacacagctctgcagGAGAAGCTAAAGGAGAGCAGTCTACGCTTGGGGCGTCTGGAAACAGTGAATTGGAGGGTGGACTACACACTGAGCTCCAGCGAACTGAAGGAGGTGAATGAGCCCACAGTACAGCTGAAGCTTCAGGCTCAGGACCCAGAGTCTGGTTCCACTGAGACCACTGTCGTTTCAGTCACTGCAGACAAGTTCAGAGTGCTCTTAACAGAACTTAAACAAGCACAAGCTATGATGAATGCACTGCAGTGAATCCATCTTGtattatgtttttgttaattcattCTAAATATGAGTGTCATATACACTTACAGAATCTCTCTGAACTGTAAGTAGCTTTGTTACTTTCTGGTCACCATTCACACACTGGCCTGTTGGAAGTCACACGGTTGGGCTTACAATTCCAGTGGAATTAATGGGATCATTTTGTGAAGCAGAGAACATGGTGGTGTAATTCTCTATTATAATGTGCAGCAGCAGTTTCAAATCGGTTTTTGGACTAAACGTAAAACAAATTAAGAACGATTTCCATTAGTTGGTCCACAGTGATAGTGATTAGTGACAGACTAATTATAAGGCACATCAGTACAGTACAGAGCTATGCACAGACCGGTCCTTGGACTAAGAACTTAAATAATAAGTTTGCTTGGtccaatatataaataatatattgcttggtccactgtttttttttttcccagtcatgttgattagttttttgttttt
>XM_026919524.2
TAGCCGTTCCTGCTAAATCAAGTCTGTCTGTAGTAATCGATGATAATTTTCAAATTATTCTGGATTTTCAAAAATGTAGCCGGTATGAGCGTGTTCACTGGGATCCCGTTAGAAGGAAAAAAGTAAGATatctaaataaatttaaaaaattttaatcataatcataataaactGTAAGTACACTGGCTGTGTGAATGGGTTGAGCGCACTTCCTGGTTCAGCCTTTAGGGGGCGGTGTAGGGAACATGGTGGCTACGAGCCGGGGCTAACAGACGAAGAAGAGCGCCTGCGCAGCTGACTGCAAGATAATATGcggTTCCGATTTTGTGGTGATTTGGACTGCCCGGACTGGGTCTTAGCAGAAATCAGCACTTTAGCACGAATATCAAGCGTCAAGATGAAACTTCTGTGTGTGCAAGTCATAAAAGACATCCTCGATGAAGGCATTGATTATGACAAGGTGGCAAAACTAACCTCTGATGCAAAATTTGAGAGTGGAGATATTAAAGCCAGTGTCGCCGTACTGAGTTTTATCCTTTCCAGTGCAGCAAAGCATGATGTTGATAGTGAATCTCTATCCAGTGAACTTCAGCAGCTGGGCTTGCCTAAAGAGCACACAACAGGACTGTGTAAATCTTatgaagacaaacacacagctctgcagGAGAAGCTAAAGGAGAGCAGTCTACGCTTGGGGCGTCTGGAAACAGTGAATTGGAGGGTGGACTACACACTGAGCTCCAGCGAACTGAAGGAGGTGAATGAGCCCACAGTACAGCTGAAGCTTCAGGCTCAGGACCCAGAGTCTGGTTCCACTGAGACCACTGTCGTTTCAGTCACTGCAGACAAGTTCAGAGTGCTCTTAACAGAACTTAAACAAGCACAAGCTATGATGAATGCACTGCAGTGAATCCATCTTGtattatgtttttgttaattcattCTAAATATGAGTGTCATATACACTTACAGAATCTCTCTGAACTGTAAGTAGCTTTGTTACTTTCTGGTCACCATTCACACACTGGCCTGTTGGAAGTCACACGGTTGGGCTTACAATTCCAGTGGAATTAATGGGATCATTTTGTGAAGCAGAGAACATGGTGGTGTAATTCTCTATTATAATGTGCAGCAGCAGTTTCAAATCGGTTTTTGGACTAAACGTAAAACAAATTAAGAACGATTTCCATTAGTTGGTCCACAGTGATAGTGATTAGTGACAGACTAATTATAAGGCACATCAGTACAGTACAGAGCTATGCACAGACCGGTCCTTGGACTAAGAACTTAAATAATAAGTTTGCTTGGtccaatatataaataatatattgcttggtccactgtttttttttttcccagtcatgttgattagttttttgttttt

Function


symbol description
commd4 Orthologous to human COMMD4 (COMM domain containing 4).

NR:

description
COMM domain-containing protein 4-like isoform X1

GO: NA

KEGG:

id description
K22560 COMMD4; COMM domain containing 4

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026919523.2 False 1301 mRNA 0.42 9 16005670 16008823
XM_026919524.2 True 1384 mRNA 0.42 8 16005686 16008823

Neighbor


gene id symbol gene type direction distance location
stra6 stra6 coding upstream 25425 15968543 ~ 15980245 (+)
LOC113530122 cyp11a,LOC108442685,LOC106561846 coding upstream 100341 15897676 ~ 15905329 (+)
stoml1 stoml1 coding upstream 110216 15891653 ~ 15895454 (+)
nr2e3 nr2e3,LOC105892475,LOC107595245,LOC107589312 coding upstream 114931 15888107 ~ 15890739 (+)
hexa hexa coding upstream 123498 15874863 ~ 15882172 (+)
neil1 neil1 coding downstream 1014 16009837 ~ 16014155 (+)
trnav-aac_18 NA coding downstream 32352 16041175 ~ 16041247 (+)
si:dkeyp-73b11.8 NA coding downstream 36752 16045575 ~ 16048154 (+)
usp3 usp3,LOC107659494 coding downstream 40261 16049084 ~ 16060168 (+)
fbxl22 fbxl22 coding downstream 52265 16061088 ~ 16066983 (+)
G149276 NA non-coding upstream 187302 15771838 ~ 15818368 (+)
G149268 NA non-coding upstream 250758 15754665 ~ 15754912 (+)
G149248 NA non-coding upstream 293753 15711013 ~ 15711917 (+)
G149131 NA non-coding upstream 436183 15567836 ~ 15569487 (+)
G149091 cpne8,LOC108274474 non-coding upstream 521767 15483074 ~ 15483903 (+)
G149427 NA non-coding downstream 16021 16024844 ~ 16026512 (+)
G149428 NA non-coding downstream 18784 16027607 ~ 16028019 (+)
G149552 NA non-coding downstream 245861 16254684 ~ 16255314 (+)
G149574 NA non-coding downstream 319433 16328256 ~ 16328539 (+)
LOC117597940 NA non-coding downstream 329767 16338590 ~ 16341963 (+)
LOC113529564 ano9,LOC108442698 other upstream 183079 15807990 ~ 15822591 (+)
svip svip other upstream 280579 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 352986 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2176339 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2228799 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1825414 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2173731 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2666187 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2712772 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2739004 18747827 ~ 18796259 (+)

Expression



Co-expression Network