hcn4l (hcn4,LOC108274590,LOC108436942,LOC107573709,LOC107696280,LOC102793391)


Basic Information

Item Value
gene id hcn4l
gene name hcn4,LOC108274590,LOC108436942,LOC107573709,LOC107696280,LOC102793391
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18378729 ~ 18398258 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919542.2
GCTTATTTGCTGTGGCAACGTGACAGATTTTTGTCCTCGCGTGCGTTCACACAACAAGCAGAAACACTGTTTGGATTAGCGATGGCGTTTGATCGCATGTACGCTCGCGTTTTTGAGCTTCAAACGTGCCCTTTACGGAACACTTGGGAACACGCGGCGCTTTGTCATTGAAACGCTCGTCAGATTGTTTCCTCGTCGCTCCGATACGTCAGTGCTCCAGCATCCCGACATCTCTCTGGGAGCGCGTTGATTCTGCCCTCACATCCCCGCTACCTGGGAATGTTACATGAGGCTACAGCTGCAGCAGGATGCACTTGCACTGATTTGTGTTTAGATACCTGTGACCAGCCGTCTGCGTCGCACAAAAACGTGTCTGTCGTCGGAAACTTGAGGGCTATGCACGCGCGTGCCCTTATCTAACTCTGACCGCGAATCGTTCTGTCGCTCGTGCCAGCGTCGCTTCGTGCGCTAAACCAAAATGGACAGGTTGCATTCTTCCATGCGCAAGCGTCTCTACAGCTTGCCCCATCAAATCGGACAGAAATCGGACGAGGGCGATGCGGACGCGCGGAGGAAGAGCGTACGCATGAAGTCGCTGGCGCCTTCAGTCTCTCCCGAGGCCGCGAGCGGCGAGCCAGACGCGCTCAGTGCGCTCAGAGGCAACGCGAACGGCGACTGCCGGAGGTTTAAAGGGAGCCTGTCGTCTGTCACCAGCCGCCACGGAGCGGACGCCGAAGCGCACGAGCAGAAGCGTCTCATCGCCGAGGAAGAAGACGACGACGACGGCGGTGGCGGAGATGGAAGTCCGGAGGAAGATGGAGCGGCGGAGGAAGGCGCGCGCGGCGGCGCTGGTGGTGGTGGCGCGGAGAGCCAGCGCTCGGCCTCGGATGAGCACGCGACTTTCATCAAGTTGGAGGGCGTCGAGCAGATGGCGCCCGACGACGAGCGCCTCTACCAGGCAGGCTTCGTGCACCGGCAGCTGGGCGCCATGCTGCAGCCCGGAGTCAACAAGTTCTCTCTCCGCATGTTCGGTAGCGAGAAGGCGGTGGAGCGCGAGCAGGAGCGGGTCAAGTCGGTCGGGTCGTGGATCATCCACCCGTACAGCGACTTCAGGTTCTACTGGGACCTGATAATGCTGCTTTTGATGGTGGGAAATCTGATCATCATCCCAGTGGGCATCACATTCTTCAAAGATGAACATACGCCAGCCTGGATTGTTTTCAACGTGGTCTCTGATACCTTCTTTTTAGTGGACCTAGTCCTGAACTTCCGGACTGGCATTGTGAAGGAGGATAGCACAGAGATCATCCTGGACCCCCAGCAGATAAAGGTGAGGTACCTACGCAGCTGGTTTGCCGTGGACTTCATCTCCTCCATCCCTGTGGATTACATCTTCCTCATCGTTGAGACACGGATTGACTCAGACTTCTACAAGACAGCCAGAGCTTTGAGGATCGTTCGCTTTACTAAGATTCTGAGTTTGCTCAGGTTGCTGCGACTGTCCCGGCTCATCAGATACATTCATCAGTGGGAGGAGATTTTCCACATGACCTATGACCTGGCTAGTGCTATGGTGCGTATAGTGAACCTGATTGGTATGATGCTGTTGCTGTGCCACTGGGACGGCTGTCTGCAGTTCCTTGTGCCCATGCTTCAGGACTTTCCTGCCGACTGCTGGGTCtccaaaaacaaaatggtgAATGATACTTGGGGTCAGCAGTACTCCTACGCCCTGTTTAAGGCTATGAGCCACATGCTGTGTATTGGGTACGGCATGTATCCACCCGTGGGCATGACAGACGTGTGGCTGACCATCCTCAGCATGATCGTGGGTGCCACCTGCTATGCCATGTTTGTGGGTCATGCCACTGCCCTTATTCAATCACTAGACTCGTCTCGAAGGCAATACCAGGAGAAGTATAAGCAAGTAGAGCAGTATATGTCCTTCCACAAGCTCCCTGCTGACATGCGCCAAAGGATCCATGACTACTATGAGCACCGTTATCAGGGCAAGATGTTTGATGAAGAGAGCATTCTTGGAGAGCTGAATGAGCCACTCCGAGAGgagatcatcagtttcaaCTGTCGAAAGCTGGTGGCCACCATGCCCTTGTTTGCTAATGCAGATCCCAATTTTGTAACCTCCATGCTTACCAAGTTACGCTTTGAAGTCTTCCAGCCAGGAGACTACATCATTCGGGAAGGCACCATaggaaagaaaatgtatttcatCCAACATGGTGTGCTGACAGTTCTGACCAAGGGCAGTAAAGAGACAAAGATTTCAGATGGGTCTTACTTTGGAGAGATCTGTTTGCTGACTCGGGGCAGAAGAACAGCCAGTGTGAGAGCAGAGACATATTGCCGTCTGTACTCTCTATCTGTGGACAACTTTAACGAAGTGTTGGAAGAGTACCCAATGATGCGTCGGGCTTTTGAGACAGTAGCCCTTGATCGTCTAGACCGCATTGGAAAGAGAAACTCTGTTCTCCAGCACAAAGTGCAGCGAGATCTCAACTCAGGTGTGCTGAACTTTCAGGAGAATGAAATCATCCAGCAGATTGTACAGCATGATAGAGACATGGCTCACTGTGCCCACCTAATGCAGACGCCCTCACCAGGTCCTCATACAACCCCAGCACCTTCTTCTCACACTCCAGTTATCTGGGCTCCTCTCATCCAGGCTCCACTCCAAGCTGCGGCAGCCACTACCTCGGTGGCCATTGCACTTACCCGCCACCCACATCTGCCACATACACTTTTCCGGCCTCCGGTACCCATGTTGGGTTCACTGAAAGATCCACCAGGACATTTTAAAAGGTTCCCTTTGGTTTCTGGTGTTACTACATTGGGTAGCTCATCCTCTGGAGCAAGTTCTCAGCTTGGCTCTGGAGTGGAGACCCCTATTTTGGATTCACTGAGAGCCAAGAGTTCTGCAACATCTTCCTCACCTCCTTTGCCTTCTGCCTCCAGTTCTTTGCCGTCTTCCACAAcaaccaccatcaccaccatcacatCCAGCATCAGCGAGGCCTCCACATTCTCCCAGAGACCGCTCAGCACCTGTGGTTCTGGAATCTCCAGTTTGGCTCAGCTCCATCCCCAACCTCAGCTTCCACATGCTTCCTTCTCCAGCATTACTGCTCCTCTGCCTGGCTTCTTCCAAAAAGGGGCAGTAGGAAGAGACGTGGCTCAATTTGCCATTCCCTCTGCCTCTACCATCACTCCTTTGATAGCCCATTCCATTAGCCCTATACTGACGCAACTGCAGTCCACTCAGCCCAATCCTCCTCAAGTTAAGTGCAGTCAGGAGGTGAGCAAACCAGTTAGGACAACCACTCCATCACCTTCTACTGGATCCCCACTTTGCTCTGCAAATCTCTTAGAGCCAACTGTCCCAAATCCCCAGACTCAGGATCCTCAGAGTAGTGATCATCTTCTCCAGCTCTCCCATGAACCATCCGCTCTGGCTTCACTTGCTCAGTATGGCTCTGGAAATGCTTCCCCTTGTAGTACCCCACCAGCCTGGAGCCCTACTTTCCAGAGTCCTGTGGTGCAGAGGAAGCGGACACCCATTAATAGCAATCCCTCAAGTACCTCAGGATCCCAAAGCTCTCTCCTGTCCCCTCAGACCATTTGTCCTCTGCCTTCCCAGTCACAAGAGAGGGTGGGGTCTCTGGTTGATCTCCCTTCTCAGGACGTCAGCACTATTTCCATATCGCTTCCTTCCCCACGACCCTTTGAGAGGCCCAAACTAATAAGACAAGGCCCACATGTCCCAGATCAGTCACATCTGATATCAGTGTCTGGGTTCAGCCATACTTCTTTCCCAACCCCTGTTACCAAACCCTATAGTTCAATACCTGGCCATGTGGCCCTGTCAAGACAGACTTCCAAAGTGTCCCAAGCCCAGACTGGGTCTCCTGGTGGCCCTGGGTCTCGAGACAGTTCCATTCCAGGGACCCCAAGCTTACACCCCAAACTCCCATCAAACTTATGAAAATGGATTGTACTCTTGTCTATTGTACAGATCATGTTTTTATCAGTGAACAATATCTATCAAAGAACATAACTTTTATAGCTAAAAAGATGTGTGTCTACCTGTATTTATAACAGTGCAATGACTACTTCTCAAGTCATAATGCCAAATGAAGGAATAGGTATGTGTCTGATGATTGAATGAGAGTGTATGTAAGTGTAGGTTTGTGACTGGGTGGTGAATAAGTGTACTATTTGAATTTGTCTTCCAAGTTCCTTTAGCAATTTTGCAATACTAATGATGGTAACATTATGTAGGGATATGCAACAGATAgcagtttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

symbol description
hcn4 Predicted to enable sodium channel activity and voltage-gated potassium channel activity. Acts upstream of or within heart contraction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in heart primordium and pericardial region. Used to study sick sinus syndrome. Human ortholog(s) of this gene implicated in Brugada syndrome 8; Gilles de la Tourette syndrome; and sick sinus syndrome. Orthologous to human HCN4 (hyperpolarization activated cyclic nucleotide gated potassium channel 4).

NR:

description
PREDICTED: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3-like

GO: NA

KEGG:

id description
K04955 HCN2; hyperpolarization activated cyclic nucleotide-gated potassium channel 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919542.2 True 4352 mRNA 0.51 8 18378729 18398258

Neighbor

gene id symbol gene type direction distance location
LOC113530128 LOC108275329,LOC108436939,LOC103046663,LOC100697142,LOC101479677,LOC107576348,LOC107716663 coding downstream 31082 18340453 ~ 18347647 (-)
arid3b LOC108275332,LOC108436938,LOC107575848,LOC107752332 coding downstream 40306 18318624 ~ 18338423 (-)
washc4 kiaa1033,si:dkey-23p11.2,LOC107696292,LOC107678984 coding downstream 133025 18228113 ~ 18245704 (-)
lrrc10 lrrc10 coding downstream 159988 18216233 ~ 18218741 (-)
agbl2 agbl2 coding downstream 176104 18184111 ~ 18202625 (-)
nptna LOC108274497,LOC108436943 coding upstream 6254 18404512 ~ 18420371 (-)
ube2q2 ube2q2,LOC108436947,LOC105015542,LOC107696278,LOC107661444 coding upstream 49884 18448142 ~ 18457983 (-)
tafa5b fam19a5b,LOC108428378,LOC108274593,LOC103024527,LOC107696241,LOC107716636,LOC107753604,LOC107598818 coding upstream 136687 18534945 ~ 18552473 (-)
zcrb1 zcrb1 coding upstream 260277 18658535 ~ 18659614 (-)
LOC113529455 LOC108274993 coding upstream 309803 18708061 ~ 18713197 (-)
G150925 LOC108275437,LOC108436941,LOC107661438,LOC107696282,LOC107573699 non-coding downstream 1888 18373113 ~ 18376841 (-)
G150891 NA non-coding downstream 40015 18338502 ~ 18338714 (-)
G150875 NA non-coding downstream 72286 18306209 ~ 18306443 (-)
G150854 NA non-coding downstream 75770 18301293 ~ 18302959 (-)
G150834 NA non-coding downstream 123311 18255075 ~ 18255418 (-)
G150988 NA non-coding upstream 23235 18421493 ~ 18422644 (-)
G150989 NA non-coding upstream 24399 18422657 ~ 18423325 (-)
G150996 NA non-coding upstream 46633 18444891 ~ 18445188 (-)
G151009 NA non-coding upstream 109518 18507776 ~ 18507976 (-)
G151026 NA non-coding upstream 188123 18586381 ~ 18587613 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other downstream 14693 18353974 ~ 18364036 (-)
etfbkmt etfbkmt other downstream 73400 18303142 ~ 18305329 (-)
LOC113530223 NA other downstream 73928 18304638 ~ 18304801 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other downstream 164242 18204651 ~ 18214487 (-)
LOC113529460 nrg4 other downstream 1319823 17053353 ~ 17058906 (-)
G150991 LOC108436944 other upstream 27061 18425319 ~ 18428973 (-)
gatd1 pddc1,LOC102788149 other upstream 893951 19292209 ~ 19295843 (-)
zgc:114188 rps17,rs17,LOC107389132,LOC103042467,LOC108428414 other upstream 981398 19379656 ~ 19392962 (-)
LOC113530226 NA other upstream 988983 19387241 ~ 19387366 (-)
LOC113530227 NA other upstream 989511 19387769 ~ 19387895 (-)

Expression


Co-expression Network