LOC113529940 (LOC108275177)


Basic Information

Item Value
gene id LOC113529940
gene name LOC108275177
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16093072 ~ 16106147 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919553.2
CGCAGCTCCGCATCACGGAAAAGCACGAAGCTCAGCGACTCGCTGCTCGCCGTGTCCTGGATTTACCTCTGAAACAAAGGAAAGCGCACCATTCCCTGATATCCTCAAAAAGGCCAGTAATGAAGCGGCCGAGGATGTCATCAGATTCAGACTATTCCATTGACTGGCTGGCCAGTGATGATGACGAGGACAATGACAGTGAGCTGGAGACTGAATGTGATCGAGAACTGGACACACTGCCCACCGCTCCTGCAGCTCAGAACAGCTGTGGCCCTcaaacctgcaggaaaagcagTGACATCTCAGTGAAGGGTAAGGAGGACAGGAGCTGCAGGAGCAGCCCCCCCTCCAGCCCAACCAGCTCTTTCAGCACTGGAGACAGGGAGCCTTCACCATCGGGACAGGAAGACATGTCTAGCCACAGCTGCACCCCGGGAAGCCCTAAAGGCAAAAGCAGACAGGCGCAGAAGAGAGCGCGGTGCCTGCCAGTGCCagagcaaaaagaaaagcagctcacAGCCAGCCCAACAGAGAAGGACAAGCTGTTTGCATGCAAGTGTGTGGAGTTGCAGTGCTATATTCACCCACTCTCCTCAATCCTGAATGGCCTTCGTTCTGGCAGATACAGAGAACGGCTCAGCACTTTCCAGGAGAGTGTAGCCATGGATCGGATCCAGAGAATAATGGGGGTCCTTCAGAATCCTTGCATGGGTGGACGGTATATTGACATCAtcctgaaaatggaggaaatgttGAAGACCTGGTTCCCTAACGTAAAACCCAGCCACCAAACCACTGCTGTGGAGCTGACACAAGAGACCGCACTGCTGAAAAAACCCAAGTTGTCCTCGGCTCCAGTCCCCATTTCTGCTGGTCTCTTCAACTCTGGCACTGCTGGTGCTTCTCCTGTGGCTGCTAAGGCCATACGGGTCAGTAACCTCATCCTTCCAGCACCTTACTCTGCCACCAATCTGAAATGGCTCCACACATCTCCCATCTGCTCACCCACTGCTGAGCAGGGCCAGCGCACAGTCCGGAACTTGCTAACAGCACGCAGGGACGAGGACGTGACACAGGACAACTCAGTTTCCTCCACTATAGACACCCCTGAACTTAACATGGACTCTGTGCCTAGTCAGCCGCCTCCAGGAAAGATCAGTGCCCCATGCCTGGAGAGACTACTGAAATCCACAGAGAGCATCATCAACCACAAAGCCCCCAGGGGGATGAGCAATATGGGCTCTGGCACCTTGTCCTAGTCCACAGAGACTGGGCTTTGGGTAATCAGAGCCTAAACAGCAGGCACTCATATTATCTCATGCCAGTGCACTCGAGCGCACCCCAGCGCAAGCCCCCTGCTTCATTTCAGCCTTCAGGGGACACACAAAGCATAGCTATGGCCAAGCCTAGCACCTAGACTGACATGGCcctcacatacacatgcatcaGCGTGTCACTGGTGTGGCAGTGCGTCCTCATCTAACTTGGGTTTGTCGGCTTTGAATCCTTTCGGGTGTATTACACTTTGTCTCCCAGATATGCCTGGTGAGACAGAGGACTGGTGGCTTGATGTGTAGAGGCAGCATATTGGTATCTGTGAATAAAGGAAAACATTACTTCAGAAAGGGATGGGAAAAGCAGGAGTAATGCATTTCTAGGGAACACTTCAGATATTCCAATGTGTCAGTGATCTCCATTGTAGTTGTACATAAAACATGTGGGATGAATGTGAATTttgcttctgtttatttttcatccGCTCCACTGGAGTCAGTTGATGTGACTGTTACTTCATAGGTATAAACTTCAAGCTAAGATTTTGGTACAACGGTTCTACCTCAATCTGACACAATGTCAATGGTTGTGTATAGAACGAATAAGAACTAATGTTCGCTGACATAGAATCAGAAAGAGGGAGCCTGCTAAGATCAAGGTGAGCCAGAATTGCCTGTAGTGCCGGGGTCTTGGGTATGAGCCTTTTTCTCTGCAAGGAAAAGCTCCACAGGCCTGATTGGTGCCAATGTATAGAATGTGAACtgcaaatttctttttttttttttttttttgatctttCTTTCAGTTAGCGTCTCCAAGTTTTAGGGCATCCAGTGCCTGTTTAATTTGATGTCAAGCTGTGCCTGTACACTGGTTTTGAAATGAATGagaaccacctggaatacctgCAACCTCTGAAGGATGGACTAGAGTGAATCAGTCAGGAACCGTCAAAACTCCTGGCATCAGATACATAGCTTAAATGTTTGCAGACTCTGTGGTCAAGTGGGACAGTGACATTTCTGTTTGCTACAGAGTAGATAATAGACTGAGAGGGAGCTATTCAGTTTTGTGTAAAAATTTGAGGTTGTTAATCTACCCTTGCAAAGTGGCCTTTACAGTGTGATATTTTATACTTTCTAAATAAATGTGGTTATATTTGTTTGGCGTA
>XM_034307478.1
gtttcattcattccttcactgCTAAAATCATTAACGTTAATTCGTCCGGTTTACGAGCAGCATCGCACGTGCAGGTAAGGGGAGGCGGAAGTGGAGGGCGTGGCCAAAACACATCACCGGGGAAAGTCTTGCTGTGGTtcttcatgtaaatatttgcgGTCAGTTTGTAATAGACTGTTTATTTGCGGCTTGGAAACGAACAAATCTACACGCATCAGAATGTAATTCCCGTGAAACAGTGCTCTAGGACACAGTGTACTGTTTTCATAGCGAACACTAATGCATTTGTAAACCTTCTATTTTGTTGTGGATGTCGTTGAATGGACGGATTATGCTGTGTTTGAATATGGCGATCGGATAGCTGCTCTCTCTCAGAGGCCATTCGCATCAGCCTCACTGATCTAATGAGGCGTGAATAAGTTTGCCACTGGGAGCAAAAACAGAGCCGCCGAGTTGACAGTCCGTCCGGCTGTTGCTGGAGTGAAACTGATCCGCGTGTCCACGTGCTTTCTGTATTTCCATGTCATTTGCATATGGAAGCTCGACTCGCCTATCGCCCACGGCCGCCTCTACACACGAACCTTATTGGTCAGCTCGGGCTGTGGAGACGCGAATGGGAGAGCCCGGCGTGTTTGTGCCCGCCCCCGCAGACACGTTGCCTGGGGAGCAGTAACACGGGCCTCTCAGTCGCAGCTCCGCATCACGGAAAAGCACGAAGCTCAGCGACTCGCTGCTCGCCGTGTCCTGGATTTACCTCTGAAACAAAGGAAAGCGCACCATTCCCTGATATCCTCAAAAAGGCCTCTTCTCCTTTCCACAGGCCAGTAATGAAGCGGCCGAGGATGTCATCAGATTCAGACTATTCCATTGACTGGCTGGCCAGTGATGATGACGAGGACAATGACAGTGAGCTGGAGACTGAATGTGATCGAGAACTGGACACACTGCCCACCGCTCCTGCAGCTCAGAACAGCTGTGGCCCTcaaacctgcaggaaaagcagTGACATCTCAGTGAAGGGTAAGGAGGACAGGAGCTGCAGGAGCAGCCCCCCCTCCAGCCCAACCAGCTCTTTCAGCACTGGAGACAGGGAGCCTTCACCATCGGGACAGGAAGACATGTCTAGCCACAGCTGCACCCCGGGAAGCCCTAAAGGCAAAAGCAGACAGGCGCAGAAGAGAGCGCGGTGCCTGCCAGTGCCagagcaaaaagaaaagcagctcacAGCCAGCCCAACAGAGAAGGACAAGCTGTTTGCATGCAAGTGTGTGGAGTTGCAGTGCTATATTCACCCACTCTCCTCAATCCTGAATGGCCTTCGTTCTGGCAGATACAGAGAACGGCTCAGCACTTTCCAGGAGAGTGTAGCCATGGATCGGATCCAGAGAATAATGGGGGTCCTTCAGAATCCTTGCATGGGTGGACGGTATATTGACATCAtcctgaaaatggaggaaatgttGAAGACCTGGTTCCCTAACGTAAAACCCAGCCACCAAACCACTGCTGTGGAGCTGACACAAGAGACCGCACTGCTGAAAAAACCCAAGTTGTCCTCGGCTCCAGTCCCCATTTCTGCTGGTCTCTTCAACTCTGGCACTGCTGGTGCTTCTCCTGTGGCTGCTAAGGCCATACGGGTCAGTAACCTCATCCTTCCAGCACCTTACTCTGCCACCAATCTGAAATGGCTCCACACATCTCCCATCTGCTCACCCACTGCTGAGCAGGGCCAGCGCACAGTCCGGAACTTGCTAACAGCACGCAGGGACGAGGACGTGACACAGGACAACTCAGTTTCCTCCACTATAGACACCCCTGAACTTAACATGGACTCTGTGCCTAGTCAGCCGCCTCCAGGAAAGATCAGTGCCCCATGCCTGGAGAGACTACTGAAATCCACAGAGAGCATCATCAACCACAAAGCCCCCAGGGGGATGAGCAATATGGGCTCTGGCACCTTGTCCTAGTCCACAGAGACTGGGCTTTGGGTAATCAGAGCCTAAACAGCAGGCACTCATATTATCTCATGCCAGTGCACTCGAGCGCACCCCAGCGCAAGCCCCCTGCTTCATTTCAGCCTTCAGGGGACACACAAAGCATAGCTATGGCCAAGCCTAGCACCTAGACTGACATGGCcctcacatacacatgcatcaGCGTGTCACTGGTGTGGCAGTGCGTCCTCATCTAACTTGGGTTTGTCGGCTTTGAATCCTTTCGGGTGTATTACACTTTGTCTCCCAGATATGCCTGGTGAGACAGAGGACTGGTGGCTTGATGTGTAGAGGCAGCATATTGGTATCTGTGAATAAAGGAAAACATTACTTCAGAAAGGGATGGGAAAAGCAGGAGTAATGCATTTCTAGGGAACACTTCAGATATTCCAATGTGTCAGTGATCTCCATTGTAGTTGTACATAAAACATGTGGGATGAATGTGAATTttgcttctgtttatttttcatccGCTCCACTGGAGTCAGTTGATGTGACTGTTACTTCATAGGTATAAACTTCAAGCTAAGATTTTGGTACAACGGTTCTACCTCAATCTGACACAATGTCAATGGTTGTGTATAGAACGAATAAGAACTAATGTTCGCTGACATAGAATCAGAAAGAGGGAGCCTGCTAAGATCAAGGTGAGCCAGAATTGCCTGTAGTGCCGGGGTCTTGGGTATGAGCCTTTTTCTCTGCAAGGAAAAGCTCCACAGGCCTGATTGGTGCCAATGTATAGAATGTGAACtgcaaatttctttttttttttttttttttgatctttCTTTCAGTTAGCGTCTCCAAGTTTTAGGGCATCCAGTGCCTGTTTAATTTGATGTCAAGCTGTGCCTGTACACTGGTTTTGAAATGAATGagaaccacctggaatacctgCAACCTCTGAAGGATGGACTAGAGTGAATCAGTCAGGAACCGTCAAAACTCCTGGCATCAGATACATAGCTTAAATGTTTGCAGACTCTGTGGTCAAGTGGGACAGTGACATTTCTGTTTGCTACAGAGTAGATAATAGACTGAGAGGGAGCTATTCAGTTTTGTGTAAAAATTTGAGGTTGTTAATCTACCCTTGCAAAGTGGCCTTTACAGTGTGATATTTTATACTTTCTAAATAAATGTGGTTATATTTGTTTGGCGTA

Function

NR:

description
PREDICTED: circadian-associated transcriptional repressor-like

GO: NA

KEGG:

id description
K21599 CIART, CHRONO, GM129; circadian-associated transcriptional repressor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919553.2 False 2446 mRNA 0.49 6 16093760 16106147
XM_034307478.1 True 3154 mRNA 0.49 6 16093072 16106147

Neighbor

gene id symbol gene type direction distance location
fbxl22 fbxl22 coding upstream 26089 16061088 ~ 16066983 (+)
usp3 usp3,LOC107659494 coding upstream 32904 16049084 ~ 16060168 (+)
si:dkeyp-73b11.8 NA coding upstream 44918 16045575 ~ 16048154 (+)
trnav-aac_18 NA coding upstream 51825 16041175 ~ 16041247 (+)
neil1 neil1 coding upstream 78917 16009837 ~ 16014155 (+)
si:ch211-112g6.4 sh2d7 coding downstream 64097 16170244 ~ 16174834 (+)
lrrc61 lrrc61,LOC107752319,LOC107598843 coding downstream 96628 16202775 ~ 16206450 (+)
idh3a idh3a,LOC107757767,LOC107659502 coding downstream 103631 16209778 ~ 16219634 (+)
dnaja dnaja4,LOC107550212,LOC107698158,LOC107752324,LOC107598844,LOC107659503,LOC107715738 coding downstream 125188 16231335 ~ 16235381 (+)
rab8b rab8b,LOC108433638,LOC107598845,LOC107550224,LOC107752325,LOC107659505 coding downstream 136101 16242248 ~ 16251075 (+)
G149428 NA non-coding upstream 65053 16027607 ~ 16028019 (+)
G149427 NA non-coding upstream 66560 16024844 ~ 16026512 (+)
G149276 NA non-coding upstream 274704 15771838 ~ 15818368 (+)
G149268 NA non-coding upstream 338160 15754665 ~ 15754912 (+)
G149248 NA non-coding upstream 381155 15711013 ~ 15711917 (+)
G149552 NA non-coding downstream 148537 16254684 ~ 16255314 (+)
G149574 NA non-coding downstream 222109 16328256 ~ 16328539 (+)
LOC117597940 NA non-coding downstream 232443 16338590 ~ 16341963 (+)
G149722 NA non-coding downstream 333559 16439706 ~ 16440054 (+)
G149723 NA non-coding downstream 339892 16446039 ~ 16449140 (+)
LOC113529564 ano9,LOC108442698 other upstream 270481 15807990 ~ 15822591 (+)
svip svip other upstream 367981 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 440388 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2263741 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2316201 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1728090 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2076407 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2568863 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2615448 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2641680 18747827 ~ 18796259 (+)

Expression


Co-expression Network