bet1l (bet1l,LOC107740886,LOC107559993,LOC107569707)


Basic Information

Item Value
gene id bet1l
gene name bet1l,LOC107740886,LOC107559993,LOC107569707
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 22070646 ~ 22074010 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919569.2
AAAGATGGCGACCATTATCAGTAAAACCAGGATAAACTGAGCTGGCTAATCCAGCTGAGCGGAGTGGAGCAGGCGGACTAACATATCCCACAATCCTTTTAGCCTTGTCAGATTTTAAGGGaacatctttatttttgttttgagttACAGTGGAATTATTTTGGACGTAGGAAcgtttttaatttgtatttttctctctgtgtttggtGGTGTTTTTGACTAGTTAGCTAGAGAGTTTGTTTATAAAGATGGCTGATCACTGGAACAGGGGACACGGTGCTGTTGATGATATGCTGGACGCAGAAAATAAACGCATGGCTGAGAATCTCGCAACCAAAGTATCCAGACTGAAGTCGTTGGCATATGATATTGACAAGGAGGCTGAAGAACAGAATTCATACTTGGATGGCATGgacTCAAATTTCCTCAGTGCAACTGGACTGTTGACGGGCAGCGTAAAGAGGTTTTCCACGATGGTCCGCTCTGGCAGAGACAACCGCAAGATCCTGTGCTACGTGTCAATAGGCCTGGTCCTGATGTTCTTTGTGCTTTACTATCTAGTCAGAAGAATACAGAACTGAcatgtctgcatttttttttttttttactatatgttttctcagttttatgagaaatataatcatttttggGAATTCAGTATGGGAATTCATCTTTGTTTATACGAGGAAATGTTTTCACAGATGTTTTCATCACTCATCTTCCAGGTATAATAAAGGTGATTAGAACTGAAAGCTCATTGGTGTGATTCCTGTTTATCCTGTACTCAGATGCTTGCTAATTACTGTAGTGAAGTAATCACGCTTTGATTGCAATATATTCCATAAATGATGTaacaaaagattttttattcTTGGAAATCCTAAGGAATGACAtaagattatttaaaatgatgtaagAACTAAACGCTTTGTTAACTGAACTTTGTACTAATTGTCcagtatgtaaatataaatatactatatcta

Function

symbol description
bet1l Predicted to enable SNAP receptor activity. Predicted to be involved in regulation of retrograde vesicle-mediated transport, Golgi to ER and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi trans cisterna. Human ortholog(s) of this gene implicated in uterine fibroid. Orthologous to human BET1L (Bet1 golgi vesicular membrane trafficking protein like).

NR:

description
BET1-like protein

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08504 BET1; blocked early in transport 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919569.2 True 986 mRNA 0.37 4 22070646 22074010

Neighbor

gene id symbol gene type direction distance location
prdm11 prdm11 coding upstream 23317 22035251 ~ 22047329 (+)
phf21ab LOC108275277,LOC108432679,LOC107673221,LOC105892361 coding upstream 36255 22004622 ~ 22034391 (+)
ambra1b ambra1,LOC108432675,LOC107559958 coding upstream 117951 21938847 ~ 21952695 (+)
glcea glce,glcea,LOC108274589,LOC107569710,LOC107673273,LOC107559985,LOC107740877,LOC107670231 coding upstream 134573 21932709 ~ 21936073 (+)
nox5 nox5,LOC107720789,LOC107559983,LOC107673291 coding upstream 139916 21916016 ~ 21930730 (+)
myo5ab LOC108275443,LOC108432640 coding downstream 7909 22081919 ~ 22107193 (+)
myo5c myo5c,LOC106561779 coding downstream 34337 22108347 ~ 22128791 (+)
gnb5a gnb5,LOC108432683,LOC106584742,LOC105018176 coding downstream 55478 22129488 ~ 22137092 (+)
ap4e1 ap4e1 coding downstream 65623 22139633 ~ 22156798 (+)
drd4a drd4,drd4a,LOC107561186,LOC107655149,LOC107726856 coding downstream 109992 22184002 ~ 22190803 (+)
G152838 NA non-coding upstream 259047 21810911 ~ 21811599 (+)
G152736 NA non-coding upstream 445982 21624450 ~ 21624664 (+)
G152403 NA non-coding upstream 945351 21122929 ~ 21125295 (+)
G152404 NA non-coding upstream 947810 21122322 ~ 21122836 (+)
G152391 NA non-coding upstream 1007587 21059032 ~ 21063059 (+)
G152984 LOC100304581 non-coding downstream 83857 22157867 ~ 22158096 (+)
G152985 NA non-coding downstream 84422 22158432 ~ 22158654 (+)
G152987 NA non-coding downstream 86648 22160658 ~ 22160872 (+)
G153013 NA non-coding downstream 141244 22215254 ~ 22215502 (+)
G153026 NA non-coding downstream 156295 22230305 ~ 22231430 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other upstream 12488 22052614 ~ 22058158 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other upstream 2322566 19661843 ~ 19748080 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other upstream 2685742 19323331 ~ 19384904 (+)
G151401 NA other upstream 2806753 19260624 ~ 19263893 (+)
faap24 faap24 other upstream 2945445 19121151 ~ 19125201 (+)
arpp19b arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970 other downstream 2839 22076849 ~ 22078496 (+)
G153014 zmp:0000001167,LOC108274702,LOC107754369,LOC107551438,LOC107561184,LOC107655150 other downstream 142265 22216275 ~ 22266382 (+)
syt7a syt7,LOC108432693,LOC107655153,LOC107754343,LOC107551433 other downstream 256753 22330763 ~ 22446147 (+)
LOC113529801 LOC108274632,LOC108274583 other downstream 525784 22599794 ~ 22623807 (+)
LOC113529608 NA other downstream 1057556 23131566 ~ 23139656 (+)

Expression


Co-expression Network