thg1l (thg1l,LOC103154062)


Basic Information

Item Value
gene id thg1l
gene name thg1l,LOC103154062
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 12006270 ~ 12011510 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919570.2
GATCCTTGTTTTAGTACGACCGCACAGTCTGACGGACCAATACAAATGATGCTACTGCAATCACTACTGTATGTGAGTTTTGGAGTTTAGTGGGCAAATCCCACAGTCCAGGATTCAGTCTCAAATTGTGATCTGATAATAATGTCATGTCCATGTAGATTCATCAACGAATAAAGTGTCTTAAATGTCTTTGATTGACAAcaggctagttagctagctaggtagttAGGTGAACTACGATACAGGAGGTTGCCACGAGCTTGGGAGGATTCTTCAGTTTCTAATCTCGTTTGAAATCCCATGCTGAGTCAGGTCTCTGCGTTGTTTGGAAATTTAGCGAAGAGGAGCAGTGGACCTCTGGCTCGGTTTTGCACAAGCTGTGTAATGGCGAAGAGTAAGTTTGAGTACGTGCGCAGCTTTGAGACTGATGACACGTGTTTACGGAACTGCTACATCGTCGTTCGACTGGATGGCCGCAATTTTCACAAGTTTGCTGAGCAGCACAACTTTACAAAGCCCAACGATGACAGAGCTTTAGGCCTGATGGCCCGCAGCGCACGCTCCGTCATGGAGGATCTGGAGGACATTGTTATAGCTTATGGGCAGAGCGATGAGTTCAGCTTTGTGTTTAAGAGATCAACCAACTGGTTCAAAAGAAGAGGAAGTAAACTGATGACCCATGTGGCATCACAGTTCTCCTCCAGCTATGTGTTTTATTGGAAGGAGTATTTTGGAGAGCAGCCGCTGCTCTATCCTCCAGGCTTCGATGGCAGAGTTGTCTTATATCCAACCAACCGTAATCTAAAAGACTACTTAAGCTGGAGACAGGCTGACTGTCACATTAACAACTTGTACAACACTGCTTTTTGGACACTGGTGCAAAAAGGTGGACTCTCCACAGCTCAAGCAGAGGAGAGGCTAAATGGAACTTTGTCTGCAGATAAGAATGAAATGTTGTTTTCAGAGTTTAATATGAATTACAACAATGAATCACCTCTACACAGAAAAGGCACCACACTGATTTGGGAAAAGGTTGATGAAACGTTGACTAAAACAATCACGTTGCCaaaggaaggagaaaaagaggtCACTTTTACACGGAGCAGAAGAAAAGTTACAGCTCATAACTGTGATATAATTGGAGATTTGTTCTGGGAAGAACATCCGGACATTTTAGAGGAAGACAGCTGCTGAATATAAACATGGTGAAAAGACTGGAGCTGGACTAATAAATGTTTTAGTGTTGACACAAACATAATaagattttctttatttccacaaaataaaaggtttatatatatagttttatatatagtttttttgtACTGCTTTTATTTGCCAGGTTAAAGAATGACTGACTCATGTGCTCTGCCTTAAGAAGGAAAACACTATTCCTAGTTATAATTAAGAAACAGTTCTATTGTTCCTTCTCAGAAGGAAGTCACGGGTAAGTCATGTTCCATCAGAGTACAATCAGTATGTTCATACAGGTCACTTCCCAAGTCAGAaattattcagattattaattTGGATGCAAGGAAGAACCTGGATGAACATGCAGCTCTGCTCTGACACCACAAGGTGGCATCATGGAGCTTTCAGACATTGCTCATGAATCTGACCTACATGTTAAATCTGTCAGTTACCTCCATGGAGGCTTCTGCATTGTCTGGTGGGATTTTAATAATCagttaattagaaaatattttgcCTATTACAGTCATTGAAATCATTAGCTCCTAGTCCATcagaatataatgaaaataaaaaggttGTACA

Function

symbol description
thg1l Predicted to enable tRNA guanylyltransferase activity. Predicted to be involved in tRNA processing. Predicted to act upstream of or within tRNA modification. Human ortholog(s) of this gene implicated in autosomal recessive cerebellar ataxia. Orthologous to human THG1L (tRNA-histidine guanylyltransferase 1 like).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K10761 THG1; tRNA(His) guanylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919570.2 True 1779 mRNA 0.41 6 12006270 12011510

Neighbor

gene id symbol gene type direction distance location
abca1b LOC108275029,LOC108442474,LOC107680923,LOC107660187,LOC107587072 coding upstream 9091 11964137 ~ 11997179 (+)
tbc1d2 tbc1d2 coding upstream 81811 11903693 ~ 11924459 (+)
smu1a smu1,LOC108275199,LOC106604632,LOC103353869,LOC108442464 coding upstream 125812 11872896 ~ 11880458 (+)
LOC113529539 pcgf3,LOC107697629,LOC107751329,LOC107562381,LOC107587068 coding upstream 336671 11631622 ~ 11669599 (+)
LOC113529641 ncbp1 coding upstream 389626 11602447 ~ 11616644 (+)
irf7 irf7 coding downstream 52907 12064417 ~ 12070764 (+)
hrasa hras,rash,LOC107562835,LOC103357265 coding downstream 132955 12144465 ~ 12161435 (+)
LOC113529450 tsg101,tsg101a,LOC107675666,LOC107675265 coding downstream 152472 12163982 ~ 12173417 (+)
brsk2a brsk2a,brsk2b,LOC108275078,LOC108239952,LOC107600443,LOC107562840,LOC106959558,LOC107696635,LOC107389007,LOC100704858,LOC106917338,LOC107085435,LOC103466148,LOC106515653 coding downstream 196465 12207975 ~ 12397868 (+)
LOC113529869 igsf22 coding downstream 567850 12579360 ~ 12598845 (+)
G146791 NA non-coding upstream 76450 11925868 ~ 11929820 (+)
G146765 NA non-coding upstream 175473 11801077 ~ 11830797 (+)
G146741 NA non-coding upstream 277589 11728026 ~ 11728681 (+)
G146687 NA non-coding upstream 331779 11670762 ~ 11674491 (+)
G146645 il17b non-coding upstream 426838 11518322 ~ 11579432 (+)
G146877 NA non-coding downstream 48785 12060295 ~ 12060586 (+)
G146883 NA non-coding downstream 80670 12092180 ~ 12100566 (+)
G147436 NA non-coding downstream 678691 12690201 ~ 12690479 (+)
G147438 NA non-coding downstream 679417 12690927 ~ 12691422 (+)
G147472 NA non-coding downstream 799012 12810522 ~ 12811329 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other upstream 408300 11595499 ~ 11597970 (+)
hrh2a LOC108274475 other upstream 699952 11295128 ~ 11306318 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other upstream 1410669 10554366 ~ 10595601 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other upstream 1458341 10537251 ~ 10547929 (+)
G145233 LOC107676291 other upstream 3164004 8841476 ~ 8842266 (+)
G147542 NA other downstream 905409 12916919 ~ 12917254 (+)
zgc:172145 LOC108275003 other downstream 1337813 13349323 ~ 13353262 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other downstream 1361362 13372872 ~ 13389196 (+)
ces2b LOC108275184 other downstream 1749824 13761334 ~ 13776871 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other downstream 1779463 13790973 ~ 13829331 (+)

Expression


Co-expression Network