bicc2 (LOC108274692)


Basic Information

Item Value
gene id bicc2
gene name LOC108274692
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 9997288 ~ 10018933 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919587.2
gcacacacactgcaaccaCGGCAGCCAGCATGGAGGGCACTTCTGTGGACCCTGTGGAACTTGAATCTGAGTCCTGCTTTGGGCCTGAACAGAATCAAAACATGGGCTCCGAGGCTGAGCAAGAGCAGAAAGTTCTGATTCAGGACAGAACcgaagaggatgaagaggaggaggaagaggaggaaggaggaaattCCAGGATGGACTCAGAGCCCAAGAACTGGGAGCAATCTGACATGGACTGGATAGAGGAGAGGTTCCGCATTGACAGGAAGAAACTGGAGACCATGCTTtacgGTCCTTCAGATGGACCAGGCCTGAGAGGAGAGGAGTTCTTCGAGAAGGTAATGAGGGAAACTAACACTCAGGTGAAATGGCCGTCAAAGCTGAAGGTTGGAGCCAAGTCAAAGAAAGATCCACATGTAAAAGTGGAAGGAAAGAGAGATGATGTCCTGGAGGCCAAGCGGAAAATTCTGGAACTTTTAGAGACGAAGGTTAATAAAGTCACTCTGAAGATGGACGTCACTCATACTGAACACTCTCATGTGATCGGTAAAGGGGGAGGAAATATCAAAAAAGTCATGGAGGACACTTCTTGTCACATCCACTTCCCTGACTCGAATCGCCACAGTGCAAACGGAGAGAAAAGCAACCAGGTGTCAATCGCTGGACCAGTGCAGGGTGTGGAATCTGCTAGAAGACACATCAGAGATCTGCAGCCTCTGGCGTTGACCATTGACCTGCCACTGACCCTGATGGGCGGGGTTGTTACAGACGCGAGCTCTCCGCTGATTCAGCATGTAGCACAGGCGTTTGGAGTGAGCGTGACGTTCAGAACACAACCCAAACTGTACTGTTCCACCTGTGTGGTGCGAGGCCTGCAAGGAAACTCCGCTGCTGtgaagAAGGCTACCTGCATCCTGATGGAGCTGCTCCTGGGCCGGGAGGCGGCAGCGGTTGCCGGGGTAACGGGTGTGGTGGTGAGCACTCAGCTGGATGTGACGTCTCAGCAGCACCTCTTCCTGCTGGGCCAGAATGGAGCCAACTTCCTCAACGTCatgcaccaaacacacacacagatcgtACTGCCTGACCTCACCGccccacaacacacaccctctctACTCATCCAGGGCACTGCTGATGGAGTGTGTCTCGCAAGACAACAGCTCAtgGAGTGCTTGCCAGTGTGTCTGATGTTCGAGATGAAGGATGAGGGTGAGTCTGACCCTCGCAAACTCGCACAGATGATGCAGAGTCTCGGAGTCTTCATCAGTGTCAAACCAAAGGCTAAACAGGCTGCTAAGTCTGTGGTGGTGAAGGGTTTGGAGAGGAACATAGCGAATCTGTATGAGGCCAGAAGACTCCTGCTAGGCCTTGACTCCTGTGAGGTCTCCATGGCAACAAAGAACTCATGTGAGGTGTCTATAGTACCAAAGTCCACAACGGACCCCCTGCTGGTCAACAGTGGAATTACAAACTACTGGCTCAACATGCTAATGCAGCAGCTGCACGTCacagagacagGCACTGTCACCACCCTGGATTCAGCTTCAAACCCCACCCCCGTGAAGCCACGCCCCTCTCCACCACCCGGACTGGCTGCTCCTGCAGATGAGGGCAGAATGGGACTGAGGGGGACAGACACTAAATTAGAGAAGATCCCGGAGAACGAGGATCAGTTGACAAATGCAGCAAGTGAGCACTTGGGAACACAGGCTCCAGAGGTCACTGAGGTCAAAGAGGTCACTGTGAAGACTGCAGGATCAGTCAGGAGAAACAGCCATTCAGAGGCTATCAGtaggtCTGTAAGAATGGAGGTGGATggtgtgtattttaataaagaCAGACGCTGCAGTCTTAGGATCTTTCCCTCTCTGGAGTCAAACGCAAATAATGAGAAACACGAGTATGAGAGGAAGAAACTTCTAGCAACTCAAGccatGCAGAAAAAGCCAGTAGTGACAGAGGTTCGGACCCCCACTGACACATGGAGTGGACTGGGTTTCTCCAAGTCGATGCCTGCTGAGGCTGTTAAGGAGCTACGCAGTGTGAGCCGCCGATGTTACAGATCCTACCTCAATAAtcaacagTCATGGAGCTCTCAAAGTAGCAAGGACAGAGTGTGTAATGGCAGCGATTCAGAGAACTGGCGAGAGAGACGAGGATCTGCATCATCGTCACCTGTGTCCTCCTGCTCTTCCTCCTCCCccacctccttctcctcctcctcctcatcatcctcatcctcatcatcatcatcaacagcCATGATGGTGTATACTTCCTGTTCAGGACGCACCAACACAGACAAAACATCTGATGGATTCACTAATGGCAGCAACTACTATGAAGGTGTATCCAGACCACTGATTGGTGGATCTCCCAGCCCTCCTCCTCAGCCAAAAGATGATCTGCTGGAGCTACTGATTCAGCTGGGCCTGGAGAAATACACCACTGTATTCCAGGAGCAAGAgaTTGATTACCAGACATTCCTCACTCTTTCTGAAGAGGATCTGAAGGAAGTGGGCGTATCCACATTCGGGGCCAGGAGGAAGATGCTGATGGCTATTTCTGATCTGAATAAAAGTAAGATGAAAGTCCCTGAAGCTCCTGCAGTTAAGTCTGGCTATCTAGAAGGTGGAGCTAGTGGCCGCCTTCCACGAATCATGGACGAGGACGTGGCTGCTAAGAGTAACCGCTGGTGAAACGGGCCTGGCAGTAAACTGGACTGTATTACCTCCACTACAGTGCTGTAGAGGCTGTGCTTCCTGACTAGTGATGTGCCTCAGTGACCAGTAAATGAGAATTAAATAAAGGACTGGCTATTAAGAATAAGTACAGACGGGCAACAGAGTGGACAGATGTGATATAACTCTCAAAGGACGTGTGTGAATAACTGACCTTCACTCTGGACCGATTTTCCTTCTGCTGCCAACATTTAATATGCAAAAACTTATggccttctctttctctttcctttctttactTTGTctcttgtctttctgtctcatcttttttctctctctctataatcaTCTCTGTGCAGTACCATGATGCACTGTGCAAATATGTGAATGGATTGTgaacaatattaaacatttgaaataaattttactCTTCactgaaggaaagaaaaatacaggACCTCATGCAAATGCTTAATCAGAAATCCTTTTAAAATAAGACTGCAGGCTTTTTGCCTAAACAGCGCTTGCTTGTTAAACAGTGTTGATTCTGGATCAGTACCACATGCTCTTATCGCTGTGTGGGAGACACACATTCAATTGTTTCGCTCATTGAACAAATAAAACTGTGCTTGG
>XM_026919588.2
gcacacacactgcaaccaCGGCAGCCAGCATGGAGGGCACTTCTGTGGACCCTGTGGAACTTGAATCTGAGTCCTGCTTTGGGCCTGAACAGAATCAAAACATGGGCTCCGAGGCTGAGCAAGAGCAGAAAGTTCTGATTCAGGACAGAACcgaagaggatgaagaggaggaggaagaggaggaaggaggaaattCCAGGATGGACTCAGAGCCCAAGAACTGGGAGCAATCTGACATGGACTGGATAGAGGAGAGGTTCCGCATTGACAGGAAGAAACTGGAGACCATGCTTtacgGTCCTTCAGATGGACCAGGCCTGAGAGGAGAGGAGTTCTTCGAGAAGGTAATGAGGGAAACTAACACTCAGGTGAAATGGCCGTCAAAGCTGAAGGTTGGAGCCAAGTCAAAGAAAGATCCACATGTAAAAGTGGAAGGAAAGAGAGATGATGTCCTGGAGGCCAAGCGGAAAATTCTGGAACTTTTAGAGACGAAGGTTAATAAAGTCACTCTGAAGATGGACGTCACTCATACTGAACACTCTCATGTGATCGGTAAAGGGGGAGGAAATATCAAAAAAGTCATGGAGGACACTTCTTGTCACATCCACTTCCCTGACTCGAATCGCCACAGTGCAAACGGAGAGAAAAGCAACCAGGTGTCAATCGCTGGACCAGTGCAGGGTGTGGAATCTGCTAGAAGACACATCAGAGATCTGCAGCCTCTGGCGTTGACCATTGACCTGCCACTGACCCTGATGGGCGGGGTTGTTACAGACGCGAGCTCTCCGCTGATTCAGCATGTAGCACAGGCGTTTGGAGTGAGCGTGACGTTCAGAACACAACCCAAACTGTACTGTTCCACCTGTGTGGTGCGAGGCCTGCAAGGAAACTCCGCTGCTGtgaagAAGGCTACCTGCATCCTGATGGAGCTGCTCCTGGGCCGGGAGGCGGCAGCGGTTGCCGGGGTAACGGGTGTGGTGGTGAGCACTCAGCTGGATGTGACGTCTCAGCAGCACCTCTTCCTGCTGGGCCAGAATGGAGCCAACTTCCTCAACGTCatgcaccaaacacacacacagatcgtACTGCCTGACCTCACCGccccacaacacacaccctctctACTCATCCAGGGCACTGCTGATGGAGTGTGTCTCGCAAGACAACAGCTCAtgGAGTGCTTGCCAGTGTGTCTGATGTTCGAGATGAAGGATGAGGGTGAGTCTGACCCTCGCAAACTCGCACAGATGATGCAGAGTCTCGGAGTCTTCATCAGTGTCAAACCAAAGGCTAAACAGGCTGCTAAGTCTGTGGTGGTGAAGGGTTTGGAGAGGAACATAGCGAATCTGTATGAGGCCAGAAGACTCCTGCTAGGCCTTGACTCCTGTGAGGTCTCCATGGCAACAAAGAACTCATGTGAGGTGTCTATAGTACCAAAGTCCACAACGGACCCCCTGCTGGTCAACAGTGGAATTACAAACTACTGGCTCAACATGCTAATGCAGCAGCTGCACGTCacagagacagGCACTGTCACCACCCTGGATTCAGCTTCAAACCCCACCCCCGTGAAGCCACGCCCCTCTCCACCACCCGGACTGGCTGCTCCTGCAGATGAGGGCAGAATGGGACTGAGGGGGACAGACACTAAATTAGAGAAGATCCCGGAGAACGAGGATCAGTTGACAAATGCAGCAAGTGAGCACTTGGGAACACAGGCTCCAGAGGTCACTGAGGTCAAAGAGGTCACTGTGAAGACTGCAGGATCAGTCAGGAGAAACAGCCATTCAGAGGCTATCAGgtCTGTAAGAATGGAGGTGGATggtgtgtattttaataaagaCAGACGCTGCAGTCTTAGGATCTTTCCCTCTCTGGAGTCAAACGCAAATAATGAGAAACACGAGTATGAGAGGAAGAAACTTCTAGCAACTCAAGccatGCAGAAAAAGCCAGTAGTGACAGAGGTTCGGACCCCCACTGACACATGGAGTGGACTGGGTTTCTCCAAGTCGATGCCTGCTGAGGCTGTTAAGGAGCTACGCAGTGTGAGCCGCCGATGTTACAGATCCTACCTCAATAAtcaacagTCATGGAGCTCTCAAAGTAGCAAGGACAGAGTGTGTAATGGCAGCGATTCAGAGAACTGGCGAGAGAGACGAGGATCTGCATCATCGTCACCTGTGTCCTCCTGCTCTTCCTCCTCCCccacctccttctcctcctcctcctcatcatcctcatcctcatcatcatcatcaacagcCATGATGGTGTATACTTCCTGTTCAGGACGCACCAACACAGACAAAACATCTGATGGATTCACTAATGGCAGCAACTACTATGAAGGTGTATCCAGACCACTGATTGGTGGATCTCCCAGCCCTCCTCCTCAGCCAAAAGATGATCTGCTGGAGCTACTGATTCAGCTGGGCCTGGAGAAATACACCACTGTATTCCAGGAGCAAGAgaTTGATTACCAGACATTCCTCACTCTTTCTGAAGAGGATCTGAAGGAAGTGGGCGTATCCACATTCGGGGCCAGGAGGAAGATGCTGATGGCTATTTCTGATCTGAATAAAAGTAAGATGAAAGTCCCTGAAGCTCCTGCAGTTAAGTCTGGCTATCTAGAAGGTGGAGCTAGTGGCCGCCTTCCACGAATCATGGACGAGGACGTGGCTGCTAAGAGTAACCGCTGGTGAAACGGGCCTGGCAGTAAACTGGACTGTATTACCTCCACTACAGTGCTGTAGAGGCTGTGCTTCCTGACTAGTGATGTGCCTCAGTGACCAGTAAATGAGAATTAAATAAAGGACTGGCTATTAAGAATAAGTACAGACGGGCAACAGAGTGGACAGATGTGATATAACTCTCAAAGGACGTGTGTGAATAACTGACCTTCACTCTGGACCGATTTTCCTTCTGCTGCCAACATTTAATATGCAAAAACTTATggccttctctttctctttcctttctttactTTGTctcttgtctttctgtctcatcttttttctctctctctataatcaTCTCTGTGCAGTACCATGATGCACTGTGCAAATATGTGAATGGATTGTgaacaatattaaacatttgaaataaattttactCTTCactgaaggaaagaaaaatacaggACCTCATGCAAATGCTTAATCAGAAATCCTTTTAAAATAAGACTGCAGGCTTTTTGCCTAAACAGCGCTTGCTTGTTAAACAGTGTTGATTCTGGATCAGTACCACATGCTCTTATCGCTGTGTGGGAGACACACATTCAATTGTTTCGCTCATTGAACAAATAAAACTGTGCTTGGA

Function

NR:

description
protein bicaudal C homolog 1-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919587.2 True 3323 mRNA 0.49 19 9997288 10018932
XM_026919588.2 False 3321 mRNA 0.49 19 9997288 10018933

Neighbor

gene id symbol gene type direction distance location
ndst1a ndst1,LOC108274691,LOC108430959,LOC102795901 coding upstream 10873 9918102 ~ 9986415 (+)
slc35a4 slc35a4 coding upstream 101944 9894150 ~ 9895344 (+)
LOC113529465 NA coding upstream 103437 9889760 ~ 9893851 (+)
LOC113529571 csf1r coding upstream 124091 9851466 ~ 9873197 (+)
pdgfrb pdgfrb,LOC107754478,LOC107693052,LOC107690880 coding upstream 153875 9798337 ~ 9843413 (+)
etf1a etf1,LOC108275025,LOC108430956 coding downstream 416014 10434947 ~ 10448212 (+)
fbxw11a fbxw11a,fbxw11,LOC108275024,LOC108430955,LOC105893085,LOC107655672,LOC107588312,LOC107660901,LOC107754486,LOC107747095 coding downstream 433414 10452347 ~ 10471279 (+)
fgf18a fgf18a,LOC108274431,LOC103029481,LOC108430953,LOC105893086,LOC107747128,LOC107660900 coding downstream 489880 10508813 ~ 10525910 (+)
pcdhb LOC108275060,LOC108430951,LOC107754491,LOC107747094,LOC107596358 coding downstream 536367 10555300 ~ 10557826 (+)
LOC117598004 LOC107596395,LOC108274580 coding downstream 539397 10558330 ~ 10560166 (+)
G145842 NA non-coding upstream 83457 9907797 ~ 9913831 (+)
G145841 NA non-coding upstream 90465 9903017 ~ 9906823 (+)
G145745 NA non-coding upstream 170005 9793274 ~ 9827283 (+)
LOC117598008 NA non-coding upstream 258777 9736278 ~ 9738511 (+)
G145711 NA non-coding upstream 265626 9726364 ~ 9731662 (+)
G145950 NA non-coding downstream 85052 10103985 ~ 10104188 (+)
LOC113530164 NA non-coding downstream 151782 10170715 ~ 10190193 (+)
G145966 NA non-coding downstream 189071 10208004 ~ 10211495 (+)
G146141 NA non-coding downstream 431743 10450676 ~ 10451023 (+)
G146168 NA non-coding downstream 507610 10526543 ~ 10526858 (+)
G145233 LOC107676291 other upstream 1155022 8841476 ~ 8842266 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 2530736 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 3040772 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 3044415 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 3045866 6951072 ~ 6951422 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 518318 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 535433 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 1276195 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 1576566 11595499 ~ 11597970 (+)
G147542 NA other downstream 2897986 12916919 ~ 12917254 (+)

Expression


Co-expression Network