foxb1a (foxb1,LOC103353681)


Basic Information

Item Value
gene id foxb1a
gene name foxb1,LOC103353681
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16498524 ~ 16500108 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919602.2
TAGCAAAGAAGTGGCACATTAATGAAGCGCCGCTCCGGGGGTCTTTTCTGCTCATGTCACCACATAAAACTATCAGATGGTTCGAGGAAGGCCATGGAGGCAGGCACTTAGCTCACCTTATCAAGCAAGAAGAGAGAGGGGATCTCGTCTGTTCGTCTGACTCGGCAAGAGGAAGCTGCTCGCCATTTGCTTATAGGCTAAAGCCTACCTACAGCTCGTCTAAAGGGgcagacttgttttttttattattattattagtatttttaatttttttttatacgaGCGACAGCAGCGCAGCCTCACATCCACAGCGAATGCTGCAGCATCGGACTCCCAACTTTCAGCGCTCTGAAACTTGGACAAGCGACACGCGGTAAACTGCTCCTTTTCTGCTCTTTTATGCTCTTCCCTCGCTCTGAGATTTGTTAATATCGACACTCAGGCCGTTCTCTGAAGAACAAGAGGATGCCTCGCCCGGGCAGAAACACTTACAGCGACCAAAAACCTCCCTATTCGTACATCTCTCTCACGGCCATGGCGATCCAGAGCTGTCCCGAGAAGATGCTGCCGCTTAGCGAGATCTACAAATTCATCATGGACCGCTTCCCGTACTACCGCGAGAATACCCAGCGATGGCAGAACTCACTGAGGCACAACCTGTCTTTCAACGACTGCTTCATCAAGATCCCGCGGCGGCCGGATCAGCCGGGCAAGGGCAGCTTCTGGGCGCTGCACCCGAACTGCGGCGACATGTTTGAGAACGGCAGCTTCCTACGGCGCCGCAAGCGCTTCAAGGTGCTCACGGCGGACCCGCTGGCACCGAGCAAGCCGTCGGAAGCTGCACATTACCTGCAGCAGCAGCATGCCAAGCTGCGTCTGAGCGCCCTGGCCGCCACAGGAGCGCACCTGCCACATGTGCCCGCCTACAACCTGACCACACCTCCGCCGTCCACCTTCAAACACCCGTTCGCCATTGAGAACATCATCGCGCGCGACTACAAGGTGCCGGGCGGCCTGGCCTTTTCCACTATGCCCTCCATGTCTGCCGGTTACCCGTTACACGGTCAGCTCGCCACAGCCTGGCCGCACGTGTATGGCGCGGGAGCTCTTGAGAGCGCTGCGCCCATTTCCGTGGCGAGCGATTACGGCGCGTACGGCATGCCTATCAAGTCGCTGTGCCACGGAGCGCAGAGTTTGCCCGCCGTGCCAGTGCCCATCAAGCCAATGCCCCCGCACCTGCCCGCGTTTCTCTCGAACTCTCCGCAGTCTCTAAGCCCCACATCCCCTCACACGGCAACCGGCCAAAGCAGTCCGGCCAACCCGAGCGACACGCTGAGCGGCCCGGCCACGCTGCAGTCAGTCGCCGTGCACTGACGCGGGCCAAAGCTGACGGAAATTTTTCCGGGACAAGGAACTGGAGGCCTGTAGACAGCTTCACGGCTACGTCCGAAACCTcacactactgtactaaatacAGAATAGTACGCCACTTGAGGTTTCTTATCCATTCATATAATTGACTCATGGATTTAATGCAGTTTTCACAACTCCAATCTAAAGACTttgcatttctaaaaaaaaaaaa

Function

symbol description
foxb1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in several processes, including mammary gland development; nervous system development; and visual learning. Predicted to act upstream of or within spinal cord development; thalamus development; and urogenital system development. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
PREDICTED: forkhead box protein B1

GO: NA

KEGG:

id description
K09395 FOXB; forkhead box protein B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919602.2 True 1585 mRNA 0.55 1 16498524 16500108

Neighbor

gene id symbol gene type direction distance location
gcnt3 NA coding upstream 74136 16422623 ~ 16424388 (+)
LOC113529796 LOC108275431,LOC108433634,LOC108274563 coding upstream 76834 16400842 ~ 16421690 (+)
klf13 znf467,klf13,znf746,LOC108274922,LOC107598847,LOC107550220 coding upstream 187465 16296593 ~ 16311059 (+)
rab8b rab8b,LOC108433638,LOC107598845,LOC107550224,LOC107752325,LOC107659505 coding upstream 247449 16242248 ~ 16251075 (+)
dnaja dnaja4,LOC107550212,LOC107698158,LOC107752324,LOC107598844,LOC107659503,LOC107715738 coding upstream 263143 16231335 ~ 16235381 (+)
tln2b tln2,LOC108433629,LOC107659514,LOC107703225,LOC107739102 coding downstream 395602 16895710 ~ 17011850 (+)
tpm1 tpm1,LOC106573503,LOC107659515,LOC107739081,LOC107712528,LOC106946143,LOC103141214,LOC107589334 coding downstream 527969 17028077 ~ 17042478 (+)
lactb lactb coding downstream 545893 17046001 ~ 17052211 (+)
tmem266 tmem266 coding downstream 561830 17061938 ~ 17113603 (+)
isl2a isl2,isl2a,LOC107589357,LOC107662481,LOC107712508 coding downstream 630749 17130857 ~ 17136035 (+)
LOC117597920 NA non-coding upstream 24296 16460380 ~ 16474228 (+)
G149723 NA non-coding upstream 49384 16446039 ~ 16449140 (+)
G149722 NA non-coding upstream 58470 16439706 ~ 16440054 (+)
LOC117597940 NA non-coding upstream 156561 16338590 ~ 16341963 (+)
G149574 NA non-coding upstream 169985 16328256 ~ 16328539 (+)
G149729 NA non-coding downstream 40491 16540599 ~ 16573872 (+)
G150148 NA non-coding downstream 736533 17236641 ~ 17236946 (+)
G150152 sqrdl non-coding downstream 753559 17253667 ~ 17255337 (+)
G150261 LOC108275011 non-coding downstream 930035 17430143 ~ 17434377 (+)
G150265 NA non-coding downstream 946141 17446249 ~ 17446460 (+)
LOC113529564 ano9,LOC108442698 other upstream 675933 15807990 ~ 15822591 (+)
svip svip other upstream 773433 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 845840 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2669193 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2721653 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1334129 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 1682446 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2174902 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2221487 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2247719 18747827 ~ 18796259 (+)

Expression


Co-expression Network