mphosph6 (mphosph6)


Basic Information

Item Value
gene id mphosph6
gene name mphosph6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15446796 ~ 15448741 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919608.2
atgcgcagtgtgTCTCTCTATTTATGTGCGCGTGGAGCATGTTTACGTGATGCTGTTAGCTAAACACTTcagtgagaaaaacagaaagcagacGTAGTTGCgtgtagttttgttttgtttaatttacagGTAGGAATTTTTTAACAAGAACACGACAAAATGCCAAACGACGGCTCAACGAAACTGTCGAAAAACCTTTTGCGGATGAAGTTTATGCAAAGAGGCCTTGATGCAGAGGCAAAAAAACAACttgaggaagaagagaagaggattATAAGTGATGAGCACTGGTATCTGGACCTGCCTGAACTTAAAGCAAAAGAAAGCTTCATTGTTGAAGAAAGAAGTTATGTCCCATGTGAAGACTTGGTTTATGGAAGAATGTCATTTAAGGGATTCAATTCTGAGGTTGAGAAGCTGATGGTTTTAATGAATGCTCCcagagaagaggaggatgaagaggaggagaaggataTGACTCGAATGGACACAGATATTACAGATGAGGAGATGGCCATGAGATATGGAAGCTTGGTTGAAAGCATGAAAAGAAGATTTGCCAAAAAAAGGGAACGCACATCTCTGAAGAATGAAGAGGAAGATGTCAACCAGAATATTGTAGAGACACAACCCAAGAAAGTGTTCTTGAAGCCCCAGGATTGAGGCATTTTATAGGctttataaagtgtgtgtgggtttttttttttttttttttttttttt

Function

symbol description
mphosph6 Predicted to be involved in maturation of 5.8S rRNA. Orthologous to human MPHOSPH6 (M-phase phosphoprotein 6).

NR:

description
M-phase phosphoprotein 6

GO: NA

KEGG:

id description
K12593 MPHOSPH6, MPP6; M-phase phosphoprotein 6, animal type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919608.2 True 722 mRNA 0.39 5 15446796 15448741

Neighbor

gene id symbol gene type direction distance location
snx20 snx20 coding upstream 741 15444108 ~ 15446055 (+)
sall1b LOC108274520 coding upstream 13257 15427516 ~ 15433539 (+)
rbl2 rbl2,LOC107659865 coding upstream 24943 15406172 ~ 15421853 (+)
irx3b LOC108275042 coding upstream 98232 15346438 ~ 15348564 (+)
amfra amfr,LOC107752457,LOC107679970,LOC107566269,LOC107723982,LOC107555700,LOC107659867 coding upstream 182912 15255055 ~ 15263884 (+)
lrrk2 lrrk2 coding downstream 128442 15577183 ~ 15605737 (+)
clpxb clpx,LOC108275190,LOC105913134,LOC108442679 coding downstream 160699 15609440 ~ 15620419 (+)
si:ch211-87j1.4 LOC108274534,LOC103040017,LOC108442681,LOC105913127,LOC107701590,LOC107695923,LOC107555711,LOC107723960,LOC107752489,LOC107571669 coding downstream 182314 15631055 ~ 15634990 (+)
fancf fancf coding downstream 302398 15751139 ~ 15752526 (+)
sigirr sigirr coding downstream 383438 15832179 ~ 15841507 (+)
LOC113530090 NA non-coding upstream 141411 15298770 ~ 15305385 (+)
G148881 NA non-coding upstream 189286 15203735 ~ 15257510 (+)
G148872 NA non-coding upstream 253167 15192755 ~ 15193629 (+)
G148869 NA non-coding upstream 297524 15148686 ~ 15149272 (+)
LOC113530230 NA non-coding upstream 308844 15137742 ~ 15137952 (+)
G149027 NA non-coding downstream 2835 15451576 ~ 15451904 (+)
G149088 NA non-coding downstream 32511 15481252 ~ 15481570 (+)
G149089 NA non-coding downstream 32946 15481687 ~ 15482028 (+)
G149091 cpne8,LOC108274474 non-coding downstream 34333 15483074 ~ 15483903 (+)
G149131 NA non-coding downstream 119095 15567836 ~ 15569487 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 1617465 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 1669925 13761334 ~ 13776871 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other upstream 2057600 13372872 ~ 13389196 (+)
zgc:172145 LOC108275003 other upstream 2093534 13349323 ~ 13353262 (+)
G147542 NA other upstream 2529542 12916919 ~ 12917254 (+)
slc5a12 slc5a12 other downstream 114565 15563306 ~ 15652684 (+)
svip svip other downstream 272537 15721278 ~ 15725091 (+)
LOC113529564 ano9,LOC108442698 other downstream 359249 15807990 ~ 15822591 (+)
G150589 LOC108274445 other downstream 2385496 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2733813 18182554 ~ 18184033 (+)

Expression


Co-expression Network