glcea (glce,glcea,LOC108274589,LOC107569710,LOC107673273,LOC107559985,LOC107740877,LOC107670231)


Basic Information

Item Value
gene id glcea
gene name glce,glcea,LOC108274589,LOC107569710,LOC107673273,LOC107559985,LOC107740877,LOC107670231
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 21932709 ~ 21936073 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919611.2
GGTGCAGGTGGGGGAGAAAAGGGCTTTGTTTGCGCCCATGTTTTCCCCGGCTTACTGAAAAATAgctttagatttttaaataaatgtagcatTTATCTCTTCTGGTTTGCTTTTGGATGTATTGCGCTTGAAACTACATATGCAGTTCCAGACCCTAAAGGCATCCTTGAGACAGCTCAGTATCTTGTAAGATGTCTCTTCCTGTCTCGTCCCACACCTGTGCATGGCTCTGATGTGAGGATGCGCTGCCTGGTGGCAAGAGTCAACCACAAAACGCTGATAGTCCTCTGTGCAGTCTTTGCTCTCATCACAGTTGTGCTGTGGAACAAGTGCTCCAGTGATGTGGCTGTACATCCACCAACCAGGCCCCAACCTGAGCCTGCACCCACTACGGAGGAAGAAGAGGACCACGGGCAGCTCCCTGAAGTGCCCCAGGTCGCCAGGGAAGtgcagtatgagcagattgacTGCCTCATTAATGAGGATGTGACGATCAAAGGGCGCCGTGAGGGCAATGAGGTGTACCTTCCCTTCAGCTGGGTGGAGAAATACTTCAATGTGTACGGGCGCCTGGTACAGTATGATGGTACAGAGCGGTTTGAGTTCTCACACAGCTACTCACGCGTGTATGCCCAGAGAGAACCCTATCATCCTGATGGGGTCTTCATGTCATTCGAAGTCTACAACGTGGAGGTGAGAGACCGCGTGAAGTGCATCAGCGGAGTGGAAGGTGTGCCCATTTCCACACAGTGGGGTCCACAGGGCTACTTTTACCCAATTCAGATAGCTCAGTATGGACTAAGTCATTACAGTAAGAATCTTACAGAGAAGCCACCTAGCATAAAGACTTATGGGTtcatggaagagagagagggcagtCCCAATCCCTGGACAGTCCCCAAAGGTTGCTCGATTGCCAAGGTCCATGACCCAGGTCACACAGCCACTATTTACCAGTTCACCACACCAGATAATTCAGAGGGTGTATCTCTGCTTCTGGACAACTCGAAGGATTTTGTCCTGTCCTTCGACGTGAAGTTCACATCAAATGGTAGCGTGTCAGTGGTGCTGGAGACAACAGAGAAGGGACCTCCATATACCATTCACTATATCACCAGCTCCCTTCTCATTTTCTTCAAGGACAGGGAGGTCACCTACGGCATTGGTCCCCAGGCAGCCTGGAGTACCCTGAGCCGAGACTTGGTGACTGACCTGCGTAAGGGAGTGGGTTTGTCTAATACCAAAGTGGTGAAGGCGACTCGGATCATTCCTCGACGCGTGGTCCAGCTGGTACTTCGTGGCTCAGGCTTCATCAGCAACATCACCATCTCCTCCACAGCTCACATGGCTGCCTTCTTTGCTGCTAGTGATTGGCTCCTACGCAACCAGGACGAGCGAGGTGGGTGGCCCATCAGAGTGGCCCGTAAGTTAGGGGAAGGTTTTAGGACACTGGAGTCTGGCTGGTACTCTGCCATGGCCCAGGGACAGGCAATGTCCACTCTGGTGAGGGCGTACCTCGTCACACATGACCTAGTGTACCTCAGCGCGGCCATGCGTGCCACTGCACCTTTCAAGCGCATGTCAGAGCAGCATGGCGTGAAAGCTCTATTCATGAACAAGTACGACTGGTATGAAGAGTACCCCACAACACCCAGCTCCTTCGTGCTCAACGGCTTCATTTACTCGCTTATCGGACTGTACGATGTGGCTGAAATAGCAGGGGACAAACTCGGCCGAGAGGCGGGCATACTGTTTAGCCGAGGATTAGAGTCCCTGAAAGCCATGCTGCCACTGTTTGACACAGGTTCTGGAACTGTCTATGACCTGAGGCATTTCACGTTAGGTGTGGCACCAAATCTGGCACGCTGGGACTACCACACCACTCACATAAACCAACTGCAGCTGCTCTCCTCTATTGACAGCAGTCCCATTTTTAGAGACTATGCAAAACGCTGGAAAAGCTACCTGAAAGGGGGTCGGGCCAAGCACAACTAGAGACTTTTAGTGGAAAGAACCTGCTGATGTGCTTTTAAAGACTGAATCAGCATGTACATTCAGTCAGTATATACTGATCAAAATGAAAGACTTACACATTTTAACTGAGAAAAGTTATCTAGTAGTTAAGCTATGTTCTTCtcaaacatacattcacacattgTGAAGTTGGAAAACATGCTTTTAGCAGCAGTGTTACTTCATACTTCCAAAATAGTGGTAACAATGCAGATATTTACATGCACTTTAAGACAAGCACATCCAATGTTGCCTattgtgatttattaaaatattgtttgtgAGTGACAGAAGCAAATATTATAAAtggtaatgtaaaataaaactagGAAACGAGGAACAGGACATTAGGTATGGGGCTTTTCCAAGGTCTTGTGCaataatttcaaaattatttgtttaactTATATTGTatgtcttatttatattttattggtaAGTGGTGTAACTTACgatgtataatttatttctattttagtGGTAAAATGACAGTCAAGGACAGATCTAAAATGACTTCTTTATttgtataaacatatatattgaAGTTTGAATATTGTTCTACAGCTCATGTAACACATCTTTCTGAGTACAGATCTGCTAGAGTTTATGGTTTTATATTATGAGCAGCTTTGaaggtaaaataaatgtatttagaCATGAA

Function

symbol description
glcea Enables heparosan-N-sulfate-glucuronate 5-epimerase activity. Acts upstream of or within dorsal/ventral axis specification and heparan sulfate proteoglycan metabolic process. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including brain; immature eye; margin; neural rod; and pronephric duct. Orthologous to human GLCE (glucuronic acid epimerase).
glce Enables calcium ion binding activity; heparosan-N-sulfate-glucuronate 5-epimerase activity; and protein homodimerization activity. Involved in heparan sulfate proteoglycan biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus.

NR:

description
PREDICTED: D-glucuronyl C5-epimerase-like

GO:

id name namespace
GO:0030201 heparan sulfate proteoglycan metabolic process biological_process
GO:0009950 dorsal/ventral axis specification biological_process
GO:0006024 glycosaminoglycan biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0047464 heparosan-N-sulfate-glucuronate 5-epimerase activity molecular_function

KEGG:

id description
K01793 GLCE; heparosan-N-sulfate-glucuronate 5-epimerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919611.2 True 2674 mRNA 0.46 4 21932709 21936073

Neighbor

gene id symbol gene type direction distance location
nox5 nox5,LOC107720789,LOC107559983,LOC107673291 coding upstream 1979 21916016 ~ 21930730 (+)
hal hal,LOC108275357,LOC103041200,LOC107670217,LOC107740873,LOC107673290,LOC107720790 coding upstream 16814 21909109 ~ 21915895 (+)
camk1db camk1d,camk1db,LOC108275359,LOC103041809,LOC107569715,LOC107670218,LOC107740872,LOC107673301 coding upstream 30092 21889672 ~ 21902617 (+)
dhtkd1 dhtkd1,LOC107559980,LOC107673284 coding upstream 47576 21867063 ~ 21885133 (+)
sergef sergef coding upstream 93933 21815900 ~ 21838776 (+)
ambra1b ambra1,LOC108432675,LOC107559958 coding downstream 2774 21938847 ~ 21952695 (+)
phf21ab LOC108275277,LOC108432679,LOC107673221,LOC105892361 coding downstream 68549 22004622 ~ 22034391 (+)
prdm11 prdm11 coding downstream 99178 22035251 ~ 22047329 (+)
bet1l bet1l,LOC107740886,LOC107559993,LOC107569707 coding downstream 134573 22070646 ~ 22074010 (+)
myo5ab LOC108275443,LOC108432640 coding downstream 145846 22081919 ~ 22107193 (+)
G152838 NA non-coding upstream 121110 21810911 ~ 21811599 (+)
G152736 NA non-coding upstream 308045 21624450 ~ 21624664 (+)
G152403 NA non-coding upstream 807414 21122929 ~ 21125295 (+)
G152404 NA non-coding upstream 809873 21122322 ~ 21122836 (+)
G152391 NA non-coding upstream 869650 21059032 ~ 21063059 (+)
G152984 LOC100304581 non-coding downstream 221794 22157867 ~ 22158096 (+)
G152985 NA non-coding downstream 222359 22158432 ~ 22158654 (+)
G152987 NA non-coding downstream 224585 22160658 ~ 22160872 (+)
G153013 NA non-coding downstream 279181 22215254 ~ 22215502 (+)
G153026 NA non-coding downstream 294232 22230305 ~ 22231430 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other upstream 2184629 19661843 ~ 19748080 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other upstream 2547805 19323331 ~ 19384904 (+)
G151401 NA other upstream 2668816 19260624 ~ 19263893 (+)
faap24 faap24 other upstream 2807508 19121151 ~ 19125201 (+)
nfat5a LOC108274760,LOC108428435 other upstream 3136450 18747827 ~ 18796259 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other downstream 116541 22052614 ~ 22058158 (+)
arpp19b arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970 other downstream 140776 22076849 ~ 22078496 (+)
G153014 zmp:0000001167,LOC108274702,LOC107754369,LOC107551438,LOC107561184,LOC107655150 other downstream 280202 22216275 ~ 22266382 (+)
syt7a syt7,LOC108432693,LOC107655153,LOC107754343,LOC107551433 other downstream 394690 22330763 ~ 22446147 (+)
LOC113529801 LOC108274632,LOC108274583 other downstream 663721 22599794 ~ 22623807 (+)

Expression


Co-expression Network