lrrc61 (lrrc61,LOC107752319,LOC107598843)


Basic Information

Item Value
gene id lrrc61
gene name lrrc61,LOC107752319,LOC107598843
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16202775 ~ 16206450 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919649.2
TAGGGTCCTTGACGTCACCTTAGTAACCAAGCAGTGCAGGTACACAGAAGAACAGGACGGATACTTCCGGGgtgatgtaaaaataaataaatgcaaattattaaCCTCTAAGCGATTTGTTTAGACTTTACAGATCAGGAGTTGGTGATGGGAATTatcttttgaaataaaatgataaaaagcaCGAGCACGCCTGACGCGCAGCCGTACAGCGTCTCAGAGCCAGGCATGCTACAGCATTAGCACAGCGTCACCAGCAGTTCACCAGCAGATAAGACAAAACACCTCTAGCGGCTTTCTCCTCTAATGAATGCATAATTTACTACAAATATGGAAGCTAAAAGGGACAAAGAGTATGAAACAGAGTGTGCAAAGATCACTCCTGGGCTCCTGAAGTCCCGAACTGGGGAATTTGATTTGGAGtccattttatttctcaaaCTAAGGAGTCTAGgaatATATGATCTTGGATGCATTGGAGAATGTATAAACCTGGAAAGGCTGGACCTCTCTGGGAATAATATTACAAATCTAGCACCTCTTGCATCACTCCGACTTCTGCTTGTGCTTAATCTGTCAGCTAACAGGATTTCCAACATAGAACCCCTCTCTAGTTGTGAAAGTCTGCAGAGTCTGAATATGGCAGGAAATCTTATATCCAGCATTGATAGCCTCCATGCTTTGAAGTCTTTACGAAAATTAGAGAGTATTAGGCTGAAGGACAACACCTACAATTACACTAATCCAGTTTGCAAGAACACCTCATACAGAAACACAGTCCTTGAAATGTTCCCAAACATCAAGGTGTTCGATGGGGAACGGGTGGTTGGACGCGGAAGTGATCTGTACCAACTATGCAAAGACATTGATGACACAATAAAAGCAGGCATGTATAAAAATGGCCAGCTGCCAGAAGTGCCAGACTGTAAGCCATGGGTAGAAGATGGGTTTTGGGAGATAAAGAGATCAAATAATGCCATTGTTGAAGAAGCCTACAAACAATTTAATgATGTTCTTCATGAATGCAGGCTGCTAAACAGAAGAGCAGCTCATGCAATCTCACAGACTGAGAGGACACTTGGCCTCAAAAACCCACCAAAGCAGTATTCTGtttgaaataaacacacatcgccacaattaaacagatttttgaTACATATTCTTTTCAGTTGATTAAAAAATTGCCACCACACACCTGtttcaatttgtttttaaaagatcCACATGCTTGACACATCACCAGTGCCAGTGCCAGAACTCCTGAATATTCAGTGCTTGGAGGGCAAGGCTTTAACTGTTACTGAGCCACTGTAACTCCACTGCTGAGCTCATGTTTATAGACTTGAGACTCATGATGGTCAAACTGAGACTTTTTTAGAATTGTCACTCAAAGctgtgtacagtatgttattgCTTTTAACAGTGCTGTGTCTTTTAGACAGTGAAATGTATGTTGTGATGCATTTATGCTATTTATTGACCATCTTAGTTTTTCCTATGATTCACTCCTTACTGACACTTTGTGTGTTTCATAGAATTGCacattgtttttgtaattttacattgTTTGATTTTCACATTCTGCCTACATTTTTTCTGACTCTGAACTACCCCATGATTTGTGATgcatataaatagataaaacacA

Function

symbol description
lrrc61 Orthologous to human LRRC61 (leucine rich repeat containing 61).

NR:

description
leucine-rich repeat-containing protein 61 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919649.2 True 1648 mRNA 0.40 9 16202775 16206450

Neighbor

gene id symbol gene type direction distance location
si:ch211-112g6.4 sh2d7 coding upstream 27941 16170244 ~ 16174834 (+)
LOC113529940 LOC108275177 coding upstream 96628 16093072 ~ 16106147 (+)
fbxl22 fbxl22 coding upstream 135792 16061088 ~ 16066983 (+)
usp3 usp3,LOC107659494 coding upstream 142607 16049084 ~ 16060168 (+)
si:dkeyp-73b11.8 NA coding upstream 154621 16045575 ~ 16048154 (+)
idh3a idh3a,LOC107757767,LOC107659502 coding downstream 3328 16209778 ~ 16219634 (+)
dnaja dnaja4,LOC107550212,LOC107698158,LOC107752324,LOC107598844,LOC107659503,LOC107715738 coding downstream 24885 16231335 ~ 16235381 (+)
rab8b rab8b,LOC108433638,LOC107598845,LOC107550224,LOC107752325,LOC107659505 coding downstream 35798 16242248 ~ 16251075 (+)
klf13 znf467,klf13,znf746,LOC108274922,LOC107598847,LOC107550220 coding downstream 90143 16296593 ~ 16311059 (+)
LOC113529796 LOC108275431,LOC108433634,LOC108274563 coding downstream 194392 16400842 ~ 16421690 (+)
G149428 NA non-coding upstream 174756 16027607 ~ 16028019 (+)
G149427 NA non-coding upstream 176263 16024844 ~ 16026512 (+)
G149276 NA non-coding upstream 384407 15771838 ~ 15818368 (+)
G149268 NA non-coding upstream 447863 15754665 ~ 15754912 (+)
G149248 NA non-coding upstream 490858 15711013 ~ 15711917 (+)
G149552 NA non-coding downstream 48234 16254684 ~ 16255314 (+)
G149574 NA non-coding downstream 121806 16328256 ~ 16328539 (+)
LOC117597940 NA non-coding downstream 132140 16338590 ~ 16341963 (+)
G149722 NA non-coding downstream 233256 16439706 ~ 16440054 (+)
G149723 NA non-coding downstream 239589 16446039 ~ 16449140 (+)
LOC113529564 ano9,LOC108442698 other upstream 380184 15807990 ~ 15822591 (+)
svip svip other upstream 477684 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 550091 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2373444 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2425904 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1627787 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 1976104 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2468560 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2515145 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2541377 18747827 ~ 18796259 (+)

Expression


Co-expression Network