LOC113530008 (hyal4,LOC108274447,LOC108274446)


Basic Information

Item Value
gene id LOC113530008
gene name hyal4,LOC108274447,LOC108274446
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17827480 ~ 17831769 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919669.2
CTGAGCTTGTAGTGAGCTATTAACTGTGACCTTTCACCCTCCTCTGAAACAGGATGTGGGCCAAGTGGTGGATGTCTGAGTTTAGTTTCTCGGTTTACCTTCTAACGAGAAATAATCACCAGAAAATCCATGGCGAGCCTCACTCTGTTTACAAGAAGATATATGCAACATCTACCTTCCCTCATCCTTTTGAACCTGGCTGGGTTATACTTTTCAGCAGCTCCTCCTCCAACAGCAGCTCCACTTTTCACTAAGCCATTTGTGGTCATATGGAATGCCCCCATCTACAGATGCAATCAACTGCAGGTTCCCCTGGACTTGAATGTGTTTCAGGCCGTCACCACACCTCAGCGTGTTCCTAACCAAGTCCTAACTCTCATGTATAATAACAGATTGGGGATTTTTCCTTACACTGACCTCTACAATTTCACACAGTACAATGGTGGCATTCCACAGAAGGGAAACCTAAATGCCAGTCTGCAAAATGCCAAAAAAGAGTTCAACCAGTACATTCCATCATCCATACCTGGCCTGGCTGTCCTGGACTGGGAGGAGTGGTTTCCTTTGTTTGACAGAAATGCAGACTTAAGAGAGATCTATAAGGCGCTATCCATAAACTACACCCTTCAACAGAATCCATCCCTCACAAGCAAACAAGCTACAGTGAAAGCCAAAGAGCAATTTGAGAAAGCTGCCAGAAGTTTCATGGAGGAAACATTGAAGTTAGGAATCTCACACAGACCAAATTTTCTCTGGGGCTTTTATTTGTTTCCTGACTGCTACAACTACGATTTTTTGAACCCAAACTACACAGGAAAATGTCCAAAGAGtgcaaatgtattaaatgaCAAACTACAATGGCTGTGGCAGGCAAGTACAGCGTTCTTTCCATCAGCATACATGCCTGTTTCTGTAAGTAAAACCCAGAAAGCAGCTCTGTTTGTCCGACATAAGGTGCTAGAAGCAATGAGAGTGGCACACTTGTCACAACGCCCCTACACTGCTCCCATTTATTTGTATCTGCAACTCCTTTTGCGGGATCAAAATGACCTGTACAAGCACGAGGTTGACCTGATTCGGAGTATTGGGGAGAGTGCAGCCCTGGGAGCCGCTGGATGTGTGCTGTGGGGCTCTAGCTATTATTTTAAAGACAAGGAATCATGTGAATCCCTTTCTGGATACTTGTCTAACACACTAAATAAGTATGTCGTCAATGTTACAACTGCGGCTGAACTGTGCAGTGACCTGCTGTGTCAAGGTAATGGGCGCTGTGTCCGTAAAAGCTATGACTCAGATGACTATCTACACCTCAACATAAGCAGCTTTAATATACAGAAGATTGATGGGATGTATAAAGTCTTTGGGAAACCTTCCCTCACTGACCTCACCGCCTGGGCTGACAAGTTCACCTGTCAGTGCTATGAGGACAAGAAATGCACAGCTCTATTTGAATCTTTCTCCAGCTacagtaatgtttaaaaatgtagtttgaCAGTGTTCTGCACTGCAAACTTTTGCTGTTTGAATATAACATCTCTTCATACTGTATGATTAATATAGGATAACCTCTCAGAACATTCTTTTCTACCATTTATGTATATTCACCCAGGTTTCTTATTTCTTGGTGGTGTGTTGCTTGAACAAGTAAAAACTCTGAAACAGATA
>XM_026919671.2
CTGAGTTTGTGCTTTTCAGCAGTACTCTGAGCAAACCTGACAGTTGGTTGCTCAAGTCTGTTTAGTGTACATCCagtttaacacacattaacccATCACTCACTGGTTAAAGAAAAGCCTACAAACTCTTTAAGGCTCAACAAGAAAGGCTAATGTTTCTGAAGGCAGTAGGACACTTGACTTGTTTGCAGGTTTACCTTCTAACGAGAAATAATCACCAGAAAATCCATGGCGAGCCTCACTCTGTTTACAAGAAGATATATGCAACATCTACCTTCCCTCATCCTTTTGAACCTGGCTGGGTTATACTTTTCAGCAGCTCCTCCTCCAACAGCAGCTCCACTTTTCACTAAGCCATTTGTGGTCATATGGAATGCCCCCATCTACAGATGCAATCAACTGCAGGTTCCCCTGGACTTGAATGTGTTTCAGGCCGTCACCACACCTCAGCGTGTTCCTAACCAAGTCCTAACTCTCATGTATAATAACAGATTGGGGATTTTTCCTTACACTGACCTCTACAATTTCACACAGTACAATGGTGGCATTCCACAGAAGGGAAACCTAAATGCCAGTCTGCAAAATGCCAAAAAAGAGTTCAACCAGTACATTCCATCATCCATACCTGGCCTGGCTGTCCTGGACTGGGAGGAGTGGTTTCCTTTGTTTGACAGAAATGCAGACTTAAGAGAGATCTATAAGGCGCTATCCATAAACTACACCCTTCAACAGAATCCATCCCTCACAAGCAAACAAGCTACAGTGAAAGCCAAAGAGCAATTTGAGAAAGCTGCCAGAAGTTTCATGGAGGAAACATTGAAGTTAGGAATCTCACACAGACCAAATTTTCTCTGGGGCTTTTATTTGTTTCCTGACTGCTACAACTACGATTTTTTGAACCCAAACTACACAGGAAAATGTCCAAAGAGtgcaaatgtattaaatgaCAAACTACAATGGCTGTGGCAGGCAAGTACAGCGTTCTTTCCATCAGCATACATGCCTGTTTCTGTAAGTAAAACCCAGAAAGCAGCTCTGTTTGTCCGACATAAGGTGCTAGAAGCAATGAGAGTGGCACACTTGTCACAACGCCCCTACACTGCTCCCATTTATTTGTATCTGCAACTCCTTTTGCGGGATCAAAATGACCTGTACAAGCACGAGGTTGACCTGATTCGGAGTATTGGGGAGAGTGCAGCCCTGGGAGCCGCTGGATGTGTGCTGTGGGGCTCTAGCTATTATTTTAAAGACAAGGAATCATGTGAATCCCTTTCTGGATACTTGTCTAACACACTAAATAAGTATGTCGTCAATGTTACAACTGCGGCTGAACTGTGCAGTGACCTGCTGTGTCAAGGTAATGGGCGCTGTGTCCGTAAAAGCTATGACTCAGATGACTATCTACACCTCAACATAAGCAGCTTTAATATACAGAAGATTGATGGGATGTATAAAGTCTTTGGGAAACCTTCCCTCACTGACCTCACCGCCTGGGCTGACAAGTTCACCTGTCAGTGCTATGAGGACAAGAAATGCACAGCTCTATTTGAATCTTTCTCCAGCTacagtaatgtttaaaaatgtagtttgaCAGTGTTCTGCACTGCAAACTTTTGCTGTTTGAATATAACATCTCTTCATACTGTATGATTAATATAGGATAACCTCTCAGAACATTCTTTTCTACCATTTATGTATATTCACCCAGGTTTCTTATTTCTTGGTGGTGTGTTGCTTGAACAAGTAAAAACTCTGAAACAGATA
>XM_034307196.1
CTGAGCTTGTAGTGAGCTATTAACTGTGACCTTTCACCCTCCTCTGAAACAGGATGTGGGCCAAGTGGTGGATGTCTGAGTTTAGTTTCTCGGTTTACCTTCTAACGAGAAATAATCACCAGAAAATCCATGGCGAGCCTCACTCTGTTTACAAGAAGATATATGCAACATCTACCTTCCCTCATCCTTTTGAACCTGGCTGGGTTATACTTTTCAGCAGCTCCTCCTCCAACAGCAGCTCCACTTTTCACTAAGCCATTTGTGGTCATATGGAATGCCCCCATCTACAGATGCAATCAACTGCAGGTTCCCCTGGACTTGAATGTGTTTCAGGCCGTCACCACACCTCAGCGTGTTCCTAACCAAGTCCTAACTCTCATGTATAATAACAGATTGGGGATTTTTCCTTACACTGACCTCTACAATTTCACACAGTACAATGGTGGCATTCCACAGAAGGGAAACCTAAATGCCAGTCTGCAAAATGCCAAAAAAGAGTTCAACCAGTACATTCCATCATCCATACCTGGCCTGGCTGTCCTGGACTGGGAGGAGTGGTTTCCTTTGTTTGACAGAAATGCAGACTTAAGAGAGATCTATAAGGCGCTATCCATAAACTACACCCTTCAACAGAATCCATCCCTCACAAGCAAACAAGCTACAGTGAAAGCCAAAGAGCAATTTGAGAAAGCTGCCAGAAGTTTCATGGAGGAAACATTGAAGTTAGGAATCTCACACAGACCAAATTTTCTCTGGGGCTTTTATTTGTTTCCTGACTGCTACAACTACGATTTTTTGAACCCAAACTACACAGGAAAATGTCCAAAGAGtgcaaatgtattaaatgaCAAACTACAATGGCTGTGGCAGGTTGACCTGATTCGGAGTATTGGGGAGAGTGCAGCCCTGGGAGCCGCTGGATGTGTGCTGTGGGGCTCTAGCTATTATTTTAAAGACAAGGAATCATGTGAATCCCTTTCTGGATACTTGTCTAACACACTAAATAAGTATGTCGTCAATGTTACAACTGCGGCTGAACTGTGCAGTGACCTGCTGTGTCAAGGTAATGGGCGCTGTGTCCGTAAAAGCTATGACTCAGATGACTATCTACACCTCAACATAAGCAGCTTTAATATACAGAAGATTGATGGGATGTATAAAGTCTTTGGGAAACCTTCCCTCACTGACCTCACCGCCTGGGCTGACAAGTTCACCTGTCAGTGCTATGAGGACAAGAAATGCACAGCTCTATTTGAATCTTTCTCCAGCTacagtaatgtttaaaaatgtagtttgaCAGTGTTCTGCACTGCAAACTTTTGCTGTTTGAATATAACATCTCTTCATACTGTATGATTAATATAGGATAACCTCTCAGAACATTCTTTTCTACCATTTATGTATATTCACCCAGGTTTCTTATTTCTTGGTGGTGTGTTGCTTGAACAAGTAAAAACTCTGAAACAGATA

Function

symbol description
hyal4 Predicted to enable hyalurononglucosaminidase activity. Predicted to be involved in hyaluronan catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in cytoplasmic vesicle. Orthologous to human HYAL4 (hyaluronidase 4).

NR:

description
PREDICTED: hyaluronidase PH-20-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919669.2 False 1665 mRNA 0.43 4 17827480 17831769
XM_026919671.2 True 1764 mRNA 0.43 4 17827480 17831670
XM_034307196.1 False 1470 mRNA 0.43 4 17827480 17831769

Neighbor

gene id symbol gene type direction distance location
LOC113529452 NA coding downstream 67441 17754384 ~ 17760039 (-)
dldh dld,dldh coding downstream 266657 17554092 ~ 17560823 (-)
parp16 parp16,LOC107589319,LOC107595248,LOC107662480 coding downstream 372402 17448608 ~ 17455078 (-)
apba2a LOC108275011,LOC106584731 coding downstream 393043 17424907 ~ 17434437 (-)
duox duox1,LOC108436899,LOC107712499,LOC106561775 coding downstream 407277 17405410 ~ 17420203 (-)
LOC117598082 LOC108274445 coding upstream 1344 17833113 ~ 17835443 (-)
LOC117597889 LOC108274445 coding upstream 8343 17840112 ~ 17842564 (-)
LOC113530148 hyal4,LOC108436916,LOC108181664,LOC107573489,LOC107752304,LOC107753633 coding upstream 15192 17846961 ~ 17860347 (-)
asb15a asb15 coding upstream 82844 17914613 ~ 17921521 (-)
ptprz1a ptprz1,LOC108274749 coding upstream 281237 18113006 ~ 18164810 (-)
G150551 NA non-coding downstream 67781 17759421 ~ 17759699 (-)
G150495 grm8b non-coding downstream 128396 17698687 ~ 17699084 (-)
G150469 NA non-coding downstream 171691 17655589 ~ 17655789 (-)
G150463 NA non-coding downstream 175600 17651673 ~ 17651880 (-)
G150459 NA non-coding downstream 180535 17646733 ~ 17646945 (-)
G150631 NA non-coding upstream 80871 17912640 ~ 17912855 (-)
G150776 NA non-coding upstream 280483 18112252 ~ 18112477 (-)
G150834 NA non-coding upstream 423306 18255075 ~ 18255418 (-)
G150854 NA non-coding upstream 469524 18301293 ~ 18302959 (-)
G150875 NA non-coding upstream 474440 18306209 ~ 18306443 (-)
LOC113529460 nrg4 other downstream 768574 17053353 ~ 17058906 (-)
acsbg1 acsbg1 other downstream 1599146 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 1835386 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 2107905 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 2598495 15219970 ~ 15228985 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 372882 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 471373 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 472869 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 522205 18353974 ~ 18364036 (-)
G150991 LOC108436944 other upstream 593550 18425319 ~ 18428973 (-)

Expression


Co-expression Network