golt1bb (golt1bb,LOC108275057,LOC108428784,LOC107676462,LOC105895666)


Basic Information

Item Value
gene id golt1bb
gene name golt1bb,LOC108275057,LOC108428784,LOC107676462,LOC105895666
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15145412 ~ 15149282 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919675.2
CGTGTTTCCGGAAGACGTGGCGATCGCTAAAATTATAACGGTGCGGCGTTTCGCCTTGATTTCTGCTCACACGGAAGCAAGTTCATAGACTGCAGAAATGATCTCCTTAACGGACTCGCAGAAAATCGGGATGGGATTAACAGGCTTCGGcgtgtttttccttttctttgggATGATCCTGTTCTTCGATAAAGCTCTGCTGGCCATAGGAAATatctTGTTTGTTGCAGGTCTGTCATTTGTTATTGGCTTGGAGCGCACTTTCAGATTCTTCTTTCAGCGGCACAAAGTAAAAGCTACGAGTTTCTTTTTGGGAGGAGTGTTTGTGGTGTTGATCGGATGGCCGATCATTGGCGTGGTGTTGGAGATTTATGGCTTCTTCCTCCTGTTCAGGGGCTTCTTCCCAGTGGCAGTGGGCTTCATCAGAAGAATACCCATTCTTGGATCACTGCTTAATCTCCCTGGTATCAGTGGGTTGGTGGACAAAGTCGGTGAAAGCAACGCCATGGtataacaaaaaagtaaacttAAAATTTTTCTCTGTGTTGTCACCACTTATTTAAACTCCTCAATcttatttgtaatttgatgCCCTTTTGGCAACCAGTGAATGTCTGGAATGAGAATTTCTCATGTTTGAGAAAAGGCAGTGCTTTTACATGGCGCATGTAGTCACCTTACAAAAGCAATGTGACCAATAGAGAGCTGTTATTTCTGGGAACTGATCCACAGCCCAAATTGGGCTCGGCTACTTTCTCTGCTGCATACCTCCATCAGAGAGGTAACACAGACTTGAACCAACAGAGGGCGTGTTTTAACGGTGCACCTATTTTTGAACGACTTTTGAACGACCTGCTGTGGGAGGAACAGAAGTTTGCTATTTCATTTCTTAGCTTTCTTTATGCCGCTGTTACAGAATTGAACGATCTCCATGTATGAAGGTGTTACTGGAAATCTGCTTGTTCGGGTGCCAACTACTTTTTAGAGTGTGCTGTATTGAAGCTGTAGCGAGAACGGCACACTGGATGAGCCTCATCATGTTACTGGCTCAGTGAGGAATTAGTAGCCTTTGTGAAACACATGATACTACATGTAAATACGTATTTTAAGTAATGTATAAGActgatgtacatttttttacacagaGACAGCAACAATTTAATAAACCTCTCAGTGTCTGTAAA

Function

symbol description
golt1bb Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and membrane. Orthologous to human GOLT1B (golgi transport 1B).

NR:

description
vesicle transport protein GOT1B

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919675.2 True 1184 mRNA 0.43 5 15145412 15149282

Neighbor

gene id symbol gene type direction distance location
pthlhb LOC108274596 coding downstream 27634 15116022 ~ 15117778 (-)
LOC113529696 LOC108274568,LOC108428736,LOC104940688,LOC106573136,LOC103380577,LOC102196233 coding downstream 30547 15113679 ~ 15114865 (-)
cib1 cib1,LOC100536377 coding downstream 46498 15094752 ~ 15098914 (-)
LOC113529649 LOC108275035 coding downstream 101574 14996107 ~ 15043838 (-)
pamr1 pamr1,LOC107570358 coding downstream 364075 14748777 ~ 14781337 (-)
gpr22b gpr22,LOC108428781,LOC107754326,LOC107561157,LOC107701065,LOC107676451 coding upstream 15283 15164565 ~ 15170707 (-)
hbp1 hbp1,LOC107701066,LOC107754327 coding upstream 45036 15194318 ~ 15199670 (-)
LOC113530066 prkar2b,LOC108275286,LOC107676465,LOC107732287 coding upstream 50733 15200015 ~ 15217057 (-)
irx5b LOC108275041 coding upstream 132576 15281858 ~ 15285227 (-)
rpgrip1l rpgrip1l coding upstream 235806 15385088 ~ 15405178 (-)
G148919 slc25a3,LOC107569351,LOC107754323 non-coding downstream 7405 15136126 ~ 15138007 (-)
G148920 LOC108275086 non-coding downstream 12915 15130776 ~ 15132497 (-)
G148926 LOC108275086,LOC108428785,LOC106523631,LOC105938579,LOC107388471 non-coding downstream 16906 15127232 ~ 15128506 (-)
G148833 NA non-coding downstream 107950 15037225 ~ 15037462 (-)
G148612 pdhx non-coding downstream 462659 14681515 ~ 14682753 (-)
G148992 NA non-coding upstream 181925 15331207 ~ 15331432 (-)
G149057 NA non-coding upstream 227921 15377203 ~ 15377406 (-)
G149301 NA non-coding upstream 575969 15725251 ~ 15725901 (-)
G149305 fancf non-coding upstream 601877 15751159 ~ 15752470 (-)
G149312 NA non-coding upstream 609002 15758284 ~ 15758501 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 57352 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 332707 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 1309657 13825782 ~ 13835755 (-)
trnar-acg_1 NA other downstream 1354867 13790287 ~ 13790545 (-)
syt8 LOC108275171,LOC103035847,LOC108428822,LOC107742052,LOC107595270,LOC107675261,LOC107549275,LOC107758745 other downstream 1680196 13457100 ~ 13465216 (-)
LOC113529695 NA other upstream 70688 15219970 ~ 15228985 (-)
LOC113529470 LOC108275326 other upstream 562711 15711993 ~ 15719575 (-)
islr2 islr2,LOC107662462 other upstream 831882 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 991837 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1904071 17053353 ~ 17058906 (-)

Expression


Co-expression Network