prnprs3


Basic Information

Item Value
gene id prnprs3
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19221929 ~ 19226416 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919684.2
ATGCCTGAACTCGGAGAGTCGACTCTTTAGGGAGTCGGATCCCAGCCCCTAGCCGAGCGCTCTGGTTGTTGTTCAGTGAATTAGCGTCGTACAGTGACAGCAGCCTCTTGGGTGAATACAGAGCATACAGAAGAAGATGAATCGTGTTGCAGTGGTCTGGGTGTGTCTGGCTTTGGTGGCGTGTGCAGTGGCCAGAAGAGGAGGCGGTGGCTTTAAAGGGGGTTTCGGCTGGGGCAAGGGCAGCAACACGGGCAGTAAAGGGACTAGCAACACGGGCAGTAAAGGGACCAGCACGGGAAACAGAGGAGGCAGTAACACCAGACATTCTTCTGGAGGAACACACTCCCAACCAGCCAATTATCCTCGCCAGCCTCATGTACCTAACCAAAACCCTCCACCATATCCTGGCACTGGTGGAGGACATGCAGGCTCTTATCCAGGCAGAGGGGGTGCTGGAGGCTACCCCAATCAAGGGGGGTATCCTAATCAAGGAGGCTATCCTAATCAAGGAGGCTATCCAAATCAAGGGGGATATCCTAATCAGGGAGGCTATCCAGGTCAAGGACGATATCCAGGTCAAGGATCATACCCAGGGGCTGGGTCATATCCAGGTCATGGGTCATATCCAGGTGCAGGTTCCTATCCCAACAGCTACCCAGGAAGGAGTGGCGGGTACCCTTATCCTCAAGGTGGATCTTACCCTGGGTACCCAGTCCGAGGAGCATCTTATCCTGGTTCCAGTCCCAACCAGTATGGTGGTGCAGGAGGATATCCTGGAGCAGCACAATACCCCTACTGGAACCCCAACAATAAAATCATCAGCCCTCGTTATGGTGGTAACTATGGATATGGTGGTTATGGATCATACGGAGCAGGAGGTTCTCCTTTCGCCCAGTCTGTGCACAGTATGGGCATGAAGCCCTCTATCCAGTCAAAGGGGTTCGGTAAGCAGGCGATATTGGCTGCTGGAGTTGGAGCTATGGCTGGCATGGCAGTAGGTTATGGCCTGGGCAGTTTTCCACGCCCACACTTCATGTTTCACAGCCCACAAGAAGAATATTATTATAACCACTACATGTACCGCCGCTATGGTACAAGACCTTCTGACAGTAACACAAACCCCAGCTCTCCAGGTGCAGAGCCAGGTGACACTGGATCAAGTTCAACTAATAATGTTCACAAGATCTTTGAAAATCCTCCACCGCAGTCATATGACAAGTACATGGACAGTTGTATGAAGAGGACAGATTTGTTGCGAGAGGACCAGGGAAGAAATAAGAGAGCTGTTGAAGGCTCCTGGCCCCAGGAGGCAGGGGATATTGAAAAGGTTCTCACTGAAAAGGATCCAAATGAGCGACTAGGTGAGAAACCAGTTGAGGAACCAGAGTCTCAAGGATCAGACCTCATTACGAGACATGAGCACGCTGGGGAAGGAAATAAAACCAGCAACGCCACGGATAACCCTCTGCCATTTGCTGCAAAGCTTACTGGTGCTACAGAGCCACCTACTGAGCCTCAGGAGAAGAAGAGTGATGAGATgaatgaggaagatgatgataCTGTAAGCATATTGGAGATCGGCTATCCTGCACTGATTGAGCAGCTGAAAGCGCGACGCTGTGTTGAGCTTTACATGGTTTATGCTGAGCAACATGCTGAGACACAGGCTCAAGTGCACAttgatgataatggtggtgaACAGCTCATGCCACTTAGCCATGGGCTCATGCTCATCTGTCTGCTTATGTGCTCCCTGTTATTCTACTGAACCTACTGAGCTTTTATGAAACCTTGTACACCCTCTTTTGTCATGGCAAGACATATCAACTGAACTACAAGAGCAAAAATTTAATGTCCAACATACACACCGTGAGTTGAGAATATAATAATGACCTGGTGATATACAGTCTTAGTCTTGGCTAATCATAAAAAAGCAAGGAATCCATATTTAAGAATAAGTAATAATTTCTGCCTCAAACATTATCGttgttataaattatattgATTAAGAAAAACCCAGAAGCTACTGGAGTTACTGAAGCTAAAACAGGATTGCATTTGTCTACATGGGTCATTCAAAGACACTCGATATTGTCGTTACACTGAATGAAGATAAATCTGTCTTGTTATCATGATCTCACTGCATGAGTATGTACACTACTGCACCCTCACTCCTCAACGTGTTGCatcatttctgcaaacaaaaatatacataactttttatttatttcctgctGATTTATAGATATCACATCCACAACCTGGACGCATGctgcttttcagtgttttcatatCTTTAGGTCAGTAATGGTACTGCTTGTAGCGCTATAGAAAttacaatgggcctcatttatcaaccctAAATTGCactcatgagtgtgtgtaaatttacacaagtCTAACTAATATAAACAACGATGGAGCAACTGATATAATTTCCATGGATTGCTGCACTTGTATATATGGATTATACTGTCAAGTTTACATAGCTTAGTGTATTGCATATGAACAAATGAACGTCACGCCTATAAGAGAGGATATGTAAAGAgcggaatgtttttttttttgggaggctAAATGTTGGCTTATAAATCGGTTCCGCTTTGCCACAGCATCTTCTTTTAACACTGTGCAACACTCCAGCACGTCAGCTGAGACACTTAAACCAATTTAAAAATAGCAGTTTCCCTGTGTGGCATGCTTGGTGTGCATGATTACTTGGGTACagtgtagatctttttttttttttttttcaccattttctttTGACACCTTTTTCTCGTCACTTCACTTAATTCAGACCTAATTCActatttctgtaattaaaaacgctatacaaataaaattttattgaatTGACGTGAGGCAAAATAGCTTCCAATTCTGCTTATCTGCCTTTTCTTAACCATTTAATAGTCATTTTGTGATTTCAGCCCTCTGTGCGCTTGACATTTTTATAGAGTTATGGTCGTAAATGAGCTGTGTGGGGAAGGATCTTTGCACTTTACTGGTGCTCAACATACATATtggagtatgaagaaaatcagcttttccgaaacttttgtaaatcggGCAGAATAATTTAGTTGGATTTGgcttacataaacatttacacacagctttactaaaagattgataaatgaggctcagtgTCTTTTATGTAGTGTACTTGTGGATTTGTGTTTAGTGGATTTACTATTTACTTTGTAAATAGCTCAGTGATGGCATCTATGACTCAGTACACAAAAGTAGTCTGTGAAGAcgatataaatgataaaacttTAATGATTCAGTAGGCTATATGAATGTACATTTAGTTCACTGCActgtttttaaggtttttataAAATCTCGAgactgaaaaattattttttgaagTGTTTAGTTTTAGATGTGCTTTAATGTGTGACTTATTTATGTTTGTAGTAAGActtgagttgactttttttttttttttttaaagttagtcGCAATTCAAATTTAAGAGTTTAGACACAAACTCTGACTATTCCTTATAAGTGAACCTCTGAACTTATTTACACTACAAGATTCCCAGTTCagcttatatacatatataacacCATGTGTGCTTGGTAAATGGTTTTGTGATGATTGCTTTTTGATGCATTGTAACAGATACAGACTAAGATGGAGATGTGGATGTGCTTTGGTGTGCTTATCCATTTCTGAGGACTGCGCTGACATAATTAATGTACCCTGTACTCATGGTTTTGTAATACGTTTAACTCATAACTGTCAATATTTCTCTGTCCATGCTTAATCTTAAATTAAATGCTGTGTTTCACTGTCT

Function

NR:

description
PREDICTED: FHA domain-containing protein FhaA-like

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0048854 brain morphogenesis biological_process
GO:2000310 regulation of NMDA receptor activity biological_process
GO:0021731 trigeminal motor nucleus development biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919684.2 True 3811 mRNA 0.42 2 19221929 19226416

Neighbor

gene id symbol gene type direction distance location
incenp incenp,LOC107701072 coding upstream 5582 19204494 ~ 19216347 (+)
ccdc77 ccdc77,LOC107754361 coding upstream 46825 19167269 ~ 19175104 (+)
LOC113529841 LOC108274949,LOC108428426 coding upstream 59781 19154291 ~ 19162148 (+)
zgc:153293 LOC108274949 coding upstream 67811 19149067 ~ 19154118 (+)
slc7a10b slc7a10,slc7a10b,LOC108274532,LOC108428368,LOC107679961,LOC107555706,LOC107752484,LOC105900738 coding upstream 80989 19126879 ~ 19140940 (+)
LOC113530162 LOC108274540,LOC103046250,LOC108428357 coding downstream 11256 19237672 ~ 19240638 (+)
thoc5 thoc5 coding downstream 43278 19269694 ~ 19280582 (+)
chid1 chid1,LOC107674841 coding downstream 59369 19285785 ~ 19292110 (+)
mov10l1 mov10l1 coding downstream 205010 19431426 ~ 19446347 (+)
szl LOC108274651,LOC108428364 coding downstream 223127 19449543 ~ 19451833 (+)
G151134 NA non-coding upstream 110956 19109843 ~ 19110973 (+)
G151084 NA non-coding upstream 223997 18955049 ~ 18997932 (+)
G151093 NA non-coding upstream 275987 18945275 ~ 18945942 (+)
LOC113530068 NA non-coding upstream 601108 18601539 ~ 18620821 (+)
G150958 NA non-coding upstream 669792 18551893 ~ 18552137 (+)
G151395 NA non-coding downstream 233 19226649 ~ 19227893 (+)
G151417 NA non-coding downstream 91570 19317986 ~ 19393161 (+)
G151419 NA non-coding downstream 167458 19393874 ~ 19397489 (+)
G151421 NA non-coding downstream 171862 19398278 ~ 19400388 (+)
G151445 LOC108274686,LOC108415052 non-coding downstream 176893 19403309 ~ 19403657 (+)
faap24 faap24 other upstream 96728 19121151 ~ 19125201 (+)
nfat5a LOC108274760,LOC108428435 other upstream 425670 18747827 ~ 18796259 (+)
urahb LOC108274538 other upstream 497243 18721595 ~ 18724686 (+)
rfwd3 rfwd3,LOC107754982 other upstream 538501 18675010 ~ 18683428 (+)
tmem17 tmem17,znf774,LOC107678976 other upstream 1037896 18182554 ~ 18184033 (+)
G151401 NA other downstream 34208 19260624 ~ 19263893 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other downstream 96915 19323331 ~ 19384904 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other downstream 435427 19661843 ~ 19748080 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other downstream 2826198 22052614 ~ 22058158 (+)
arpp19b arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970 other downstream 2850433 22076849 ~ 22078496 (+)

Expression


Co-expression Network