cib2 (cib2,LOC103027299,LOC107752320,LOC107573330,LOC104917862)


Basic Information

Item Value
gene id cib2
gene name cib2,LOC103027299,LOC107752320,LOC107573330,LOC104917862
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16180917 ~ 16199115 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919721.2
GGCTGTGGACAGCAGTGGGTGCTGAAACAGGAGTGAGTGTGAGTAATCCTACAGGCTATTCTGCTATTCATGAACCTCTTCACTCGAGTAGGGGAGGATCGCGGATCACCTTGCACTCAAGTATTTATGGAGAGTGCTATTGGCATTACAAACATCCATAAGTAAGCCGGAGGTCTGCAATTCTATGCGCGGTCACGCTTTTCTCCGTCTGGCCACACCGTATACATGCCATAAATGCCTAGAAAAGCCAGGACTCCTCCAACTCCGAATGTGATGCATCTGTACGACAGGAAAATCACTCGACTAAGATGGGTAATAAGCAGACGATATTTACTGATGAACAGCTAGACGCCTACCAGgacTGCACCTTTTTTACACGCAAGGAAATCCTTCGGTTACATGGAAGATACCATGAACTGGCTCCGCATTTAGTTCCCATGGATTACACAAATGATCCTGATGTTAAAGTCCCTTTAAGCCTCATAGTCAATATGCCAGAGTTGAAGGAAAATCCATTCCGTGACAGGATTGTGGAGTCCTTCTCCGAGGACGGCTTGGGGAACCTCAGCTTCAACGACTTTGTCGACATGTTCTCAGTTCTGAGTGAAATGGCCCCCCGAGAGCTAAAGGCCatttatgcttttaaaatatatgATTTCAATGTGGATAATTATATCTGTAAGGAGGACCTTGAAAAGACTCTGAACAAGCTGACGAAGGAGGAGCTGACTCCTGAGGAGGTGAACTTGGTGTGTGAGAAGGCGATTGAGGAGGCTGACTTGGATGGAGACAGCAAGCTTTCCTTCTCTGACTTTGAAAACATGATTTCCAGGGCTCCTGACTTTTTAAGCACCTTCCATATACGAATCTGAGAGGGCTTCTACTTCATCAACAGAGATTCTTTGGAGTCCCTGACTACAACTTGAATCCTTCTTGAAAAACCATGGACACATATATAGTGCATAGCAGTGCCTGTCCTCTACAGCTCTGAAGAGTTTTCTCTTGGTCCTATTCGAACAGCACTCACTTATTGGGGAAGCTGGATTCTGGCTCTggaaatatttcttttcttttttttctgaggaagCACACTTTAGACTGAGGAATGCTGAGAAAATGCATGACTATTTTTCCTACTGGAAAGATTCTGCAGTTGGCTCAGATTCTCAGAGCGGAAGTAAAAATGCCTGGAGGTTGAACATCTGTGTGGGCATTTCTCATATCCATGTGGCGTTTGGGGAAGACTCCACTGGAATATGGACATATGGTGTTATGCTTGTTTCTTTGTCATACAATGTCCATGGCACCACTAAATACATCAGACACTCTCCTCCTGTTGTCTCCTCTCATTTAAAATTAGGAAAGGTGTGGTGGAGTGaaggacaaaataaagaagagagaaaatacaGGATGTAgagattgacaggagagagagagagagagagagagagagagaagagaatgaGGGCTAAAAGCACAGCACTGGCATCACAGTCAAAAAAGACAGTCTTATCTTTTATACAGCTATGCAATCTTTCTCCATGAAATGCATGAGTTGCATTCATTTTGCCCTCTGCTATAAATTGCTTTTGCTGTATCTGATTCTCTTAGTTGTCTTACTGCTTATAGGACTGGAGCATGACGACAATCATATCAAACTGTTCTCCAGTTGTACCAAGGGCTCTGTCATCTTTTCTTACATTCAGCCATTCAGaaactatacatttttattgtgcTCTTACATTCTCGTTTTGCTGTTTGAACCTGATGTGTGTTAGCGCCACCTCTTAATCTCTTAATGTCAACCCTTTTTTCAATGTAATAGAGGGCATTTGACTTAACTTTGAATAAAACGTTTTCTGCTG

Function

symbol description
cib2 Predicted to enable calcium ion binding activity. Acts upstream of or within camera-type eye development; mechanosensory behavior; and neuromast development. Is expressed in central nervous system and cranial ganglion. Human ortholog(s) of this gene implicated in Usher syndrome type 1J and autosomal recessive nonsyndromic deafness 48. Orthologous to human CIB2 (calcium and integrin binding family member 2).

NR:

description
calcium and integrin-binding family member 2-like isoform X1

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0043010 camera-type eye development biological_process
GO:0048884 neuromast development biological_process
GO:0007638 mechanosensory behavior biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23837 CIB2; calcium and integrin-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919721.2 True 1865 mRNA 0.43 6 16180917 16199115

Neighbor

gene id symbol gene type direction distance location
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding downstream 14918 16141596 ~ 16165999 (-)
dapk2b dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496 coding downstream 40013 16121657 ~ 16140904 (-)
ca12 ca12 coding downstream 137065 16028155 ~ 16043852 (-)
man2c1 man2c1,LOC107752311 coding downstream 156059 16014920 ~ 16024858 (-)
sema7a sema7a coding downstream 175554 15997889 ~ 16005363 (-)
rps27l rps27l,zgc:136826,LOC107598918,LOC107752326 coding upstream 37028 16236143 ~ 16238157 (-)
LOC113530180 LOC108274564 coding upstream 52229 16251344 ~ 16254496 (-)
LOC113529693 LOC108274564,LOC108433637,LOC108441836,LOC107750517 coding upstream 57395 16256510 ~ 16262939 (-)
trpm1b LOC108274564,LOC108433637,LOC107585966,LOC107750517 coding upstream 66447 16265562 ~ 16267986 (-)
otud7a otud7a,LOC108275340,LOC107715690,LOC107659507,LOC107752330,LOC107698115,LOC107550219,LOC107598848 coding upstream 126827 16325942 ~ 16362375 (-)
G149495 NA non-coding downstream 85742 16093072 ~ 16095175 (-)
LOC113529609 NA non-coding downstream 87987 16068429 ~ 16092930 (-)
G149366 NA non-coding downstream 277015 15903692 ~ 15903902 (-)
G149364 NA non-coding downstream 278275 15902440 ~ 15902642 (-)
G149363 cyp11a non-coding downstream 282756 15897890 ~ 15898161 (-)
LOC117597941 NA non-coding upstream 31499 16230614 ~ 16231809 (-)
G149643 NA non-coding upstream 50046 16249161 ~ 16251085 (-)
G149649 NA non-coding upstream 55532 16254647 ~ 16255486 (-)
G149632 klf13,znf746,LOC108274922,LOC107550220,LOC107598847,LOC107752329 non-coding upstream 110775 16309890 ~ 16317926 (-)
G149718 NA non-coding upstream 223551 16422666 ~ 16424604 (-)
islr2 islr2,LOC107662462 other downstream 188823 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 461342 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 951932 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 1092857 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 1368212 14810004 ~ 14812705 (-)
LOC113529460 nrg4 other upstream 854238 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2005536 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2104027 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 2105523 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 2154859 18353974 ~ 18364036 (-)

Expression


Co-expression Network