si:ch211-112g6.4 (sh2d7)


Basic Information

Item Value
gene id si:ch211-112g6.4
gene name sh2d7
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16170244 ~ 16174834 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919736.2
CCAACATGAgctgttcaattttttttgccCCTGAATTTTCCAGTCCCCATGGAAGGTGTCTAATGTAAATGTCAGCACTGTATATCAATCGTTTAACTGTCTGTACACCTTCAGAACGccttttctttcctctgaaGCAGCTGAGGAGAACATCTGTGTTGAGTAACATGAGACTCAAATCACACCACGTACAGCAACGCTCCCCAACAGCTCTGTGGTGCAATCGAGACTGCCTGGGGCAGGGTTGTTGCAAAACTCAGCTTAAACACATCACTGGTGAACGCTCAATGGAGCAGAAGAGGTACAAGCCTCACAGGATCCAGACCTGCCTGTTGTTTTGCATGAAGGATCGCGTGAAGATGGAGCATATGCAGCCGGAGAGCACCAAGAGCAAACTGAGGGAGCTGGCCCTCAAGTGGTTCACCGAGACCCAGGCTCCTCTCATCCTCCACAAAGGCAACTTTCCTGCCTGGTTCCAGGGCTTCATCAGCAGAAAGGATGCAGAAGATCATCTGAGAGATAAAGAACTGGGCTGTTTCCTTATTCGCCTCAGTGATAAAGCCACTGGATACATCCTGTCATATCGaggACGTGACCGGTGCCGGCACTTTGTCATCAACCAGAATAAGGAAGGGCAGTTTATTGTGACAGGAGACACTGAAATGCATGATACACTGACCAGCCTGATCGAGTATTACAAGACCAGTCCTATTGAGCCATTTGGAGAATATTTAACAGTGTCTTGTTTTGAGTTGCCTACGAATGATCTCTATGATGTGGTGCAGTTGGAGCCGAAGGTGAAGTCAGGGGTGAGTGTGGAGGCAGTAAGGATGATTTGGAACCAGCGAGCCGAACAGGCAGCTCATTCTCAGCATGCTCCAGCCTTGCCACCCAAGAGCATCAGAAACACCCAAGCCATCCCTCCAGTTCCAAAAAGAGGCTCCCCAATAAAGACAAGCTCCCTGGAGGAAAAAAGCACTTCAGACAATAAGGTACTACTGTATGCCAAGCTGGAACAGGCCAGGCGTCTGCAAAGCAGAGATAGTGATGCTAGAGCTGAATTGGCGAGACACAGAGGAGCCATGCCAGTTTCTGACCCACCAAACGTCACAGCCCAGGACATGCCTGCACTGGGAAAGGGCACCGTTTATTCAGAACTCAGCCTTTCAGACTGCAGGAGTAAATCACTCCCCCTACTGGACAATAACACAAGGGAAGAGCGTTCGTACAAGCTGAACACCTTCACAGTAAACCCACCTCAGCTGTCCCCTAAACTCGAGAGAGAGAACGCTAAGAAAACCAGCAGCCATGAGGGGCCAAGCCACAGCCACAGTCTGGATAAGCTAAGTGATCATTCCTTCTATCAGCTGGCTGGCAAGTCTGCCAATCCCAAAGACATGAAGCAGCAAGAGAAAAGTGATGCTACATATGCTGAAGTGCCTTGTGAACCCGGGCCAAACCATTTGCTGTTAGAGAACACTTATGAGCAAATTCCTGAAACAATGTCCACTACAAACCCAAAGGAGATCTCTGTCCAGGGAAACACCTACGAGACACTAGAAGACTTCAAACCAAAGCCAAGCGAGTCAGCATGGGGCTTTAAGGGTGACAAATGGAAAAGGCTGCTCCCTGAAAACTGGAAGAAATGACAGAGTCTTCATCCACTAAATCAACGGTTACACATAAACACGCAAATCGTGAGAGTTacactaaaaacaaaagcagtcagtttattgaaattatttatGTCAAGGCTATTCTAAATACAATCAAATGGTTAAAATGCTGATATGAGGTTCTATTCTTGTGTCCTTAACag

Function

symbol description
sh2d7 Orthologous to human SH2D7 (SH2 domain containing 7).

NR:

description
PREDICTED: SH2 domain-containing protein 7-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919736.2 True 1819 mRNA 0.47 8 16170244 16174834

Neighbor

gene id symbol gene type direction distance location
LOC113529940 LOC108275177 coding upstream 64097 16093072 ~ 16106147 (+)
fbxl22 fbxl22 coding upstream 103261 16061088 ~ 16066983 (+)
usp3 usp3,LOC107659494 coding upstream 110076 16049084 ~ 16060168 (+)
si:dkeyp-73b11.8 NA coding upstream 122090 16045575 ~ 16048154 (+)
trnav-aac_18 NA coding upstream 128997 16041175 ~ 16041247 (+)
lrrc61 lrrc61,LOC107752319,LOC107598843 coding downstream 27941 16202775 ~ 16206450 (+)
idh3a idh3a,LOC107757767,LOC107659502 coding downstream 34944 16209778 ~ 16219634 (+)
dnaja dnaja4,LOC107550212,LOC107698158,LOC107752324,LOC107598844,LOC107659503,LOC107715738 coding downstream 56501 16231335 ~ 16235381 (+)
rab8b rab8b,LOC108433638,LOC107598845,LOC107550224,LOC107752325,LOC107659505 coding downstream 67414 16242248 ~ 16251075 (+)
klf13 znf467,klf13,znf746,LOC108274922,LOC107598847,LOC107550220 coding downstream 121759 16296593 ~ 16311059 (+)
G149428 NA non-coding upstream 142225 16027607 ~ 16028019 (+)
G149427 NA non-coding upstream 143732 16024844 ~ 16026512 (+)
G149276 NA non-coding upstream 351876 15771838 ~ 15818368 (+)
G149268 NA non-coding upstream 415332 15754665 ~ 15754912 (+)
G149248 NA non-coding upstream 458327 15711013 ~ 15711917 (+)
G149552 NA non-coding downstream 79850 16254684 ~ 16255314 (+)
G149574 NA non-coding downstream 153422 16328256 ~ 16328539 (+)
LOC117597940 NA non-coding downstream 163756 16338590 ~ 16341963 (+)
G149722 NA non-coding downstream 264872 16439706 ~ 16440054 (+)
G149723 NA non-coding downstream 271205 16446039 ~ 16449140 (+)
LOC113529564 ano9,LOC108442698 other upstream 347653 15807990 ~ 15822591 (+)
svip svip other upstream 445153 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 517560 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2340913 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2393373 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1659403 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2007720 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2500176 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2546761 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2572993 18747827 ~ 18796259 (+)

Expression


Co-expression Network