zgc:101540 (slc27a2,LOC108414297)


Basic Information

Item Value
gene id zgc:101540
gene name slc27a2,LOC108414297
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17316673 ~ 17322858 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919770.2
CCCCTGAAGCGAAATCTTGGAAAGGATTGATTACATCTATCTGTCTGGCTCATATCTAAGAGCTTGTGATTTCCACGTTTCACAGTGCTGCACTTTCCTTTTCTGGATCAGGCTTTgtctgagcagcagctctgttcGCATGGCCATGTACGTGTGCTTTACTTTCCTTGTGGCTGGGCTGTGTGTGCTGCCTGCTTTGCTGTGGACACTGTGTCCATACCTGCTCCAGGACTGCGCCTACATGCTGAACGCTGTGCGCTTCGGACTGCGCCTGGAGCGCTACAAGAGGAGAGCTCGCTTCTACAGCATTCTCGACTGTTTTCTGGATGCCGTGAGGAAACATCCACACAAACCCTTCATCCACTTCATGGGAGAGACGCACTCGTACTCAGACGTGGACAGAGAGAGTAATAAAGTGGCTCATGCTTTGCAGAAGGTGGCTGGACTGAAGGAGGGTGACGTTGTGGCCTTGTTCATAGGCAATGAGCCTTGTTTTATCTGGCTCTGGCTGGGCCTGGCTAAACTCGGCTGTGCCTCTGCTTTACTCAACTTTAACATCAGATCCAAATCTCTTCTGCACTGCTTCTCCTGCTGTGGTGCAAACGTGCTCATAGTGAGCGAAGAGCTCTGCGGTGCCATTGAAGAAGTTTTGCCTGCTTTGAAAGAGAAGAGCATCAGCGTGTATGTGCTCTCTGATGCATGCAGCACAGATGGCATTAAGGGCATCTCTCAGGCCATCACACAGGCGCCTGACGAAGCGCTGTCTCCATCACTCAGGGCTAATGTTAAATTCCACAGCACAGCGCTATATATCTACACATCTGGAACCACCGGTCTGCCTAAAGCAGCCATGGTGACTCATGAGAGAGTCTGGGCTGCTTCATTCATCCAGGCTGTTTCTGGGGTCACATCTGAAGACGTGTTTTACCTCAACCTGCCTCTGTACCACAGCGCTGGCTTCCTCATAGGATTCACCGGCTGTATTGAGAGAGGGAATACTTTAGTTCTGCGGAGGAAATTTTCTGCCTCTCAGTTCTGGGACGACTGCAGGAAGTATAATGttacagtgatgcagtacatTGGAGAAACAATGCGTTACCTCTGCAGTACACCAAAGAGAGATAATGACCGAGACCACAAAGTGAAGATTGCTATAGGTAACGGTGTACGAGCCGACGTGTGGAATGAATTTTTGAATCGCTTTGGGAATATTTACGTCAGGGAGCTCTACGCTGCCACAGAGGGAAACATCGGGTTTATTAACTACACCACTAAGGTTGGAGTGGTAGGCCGTGTTAACTTCCTCCACAAGAAATTGTTCCCCCATTCCCTGATCAAGTTCGACATCGAGAAAGAGGAGCCTGTGAGGAATGCAGACGGACTTTGTGTGCCAGCAGCTCGAGGTGAGCCTGGACTGCTGGTTGGGAAAATCACCATTAAGTCTCCATTTGTTGGTTACGCTGGAAACAAGCAGcagacagaaaggaaaagactcagaaatgtgtttgttgaaGGCGATCTCTATTTCAACAGCGGTGACTTGCTGAAAATCGACCATGAAAACTTCGTCTACTTTCAGGATCGGGTTGGAGACACTTTCAGATGGAAAGGTGAAAACGTAGCCACAACTGAAGTATCAGATATTCTGACTATGGTGGACTGCATTGAGGAAGCAAACGTCTATGGCGTCATGGTCAAAGGGCACGAAGGGAGGATTGGAATGGCGGCTGTTGTGTTGAAAGAAGGGAAGGAGTTTGATGGCATTGACACATGTAGAGTTTTAGCTAACTACCTACCAGTTTATGCCAGACCTCGTTTCATTCGCATTCAGAGTTCTTTGGAACTCACAGGAACTTTCAAGATGAAAAAGGTGAAGCTGGTGGAGGAGGGCTTTGATCCAGCGCTCATTCGCGACCCACTCTACTTCCTTGATCTAGTTGAAAAGAAATACGTTGCTCTCACTCAGGAAATGTATAATTCAGTGATTGCAGGAGACATTAAACTATAAGTctggaaatgtaaaaatatgagtatactttaaaaatgaaaggttGTTGTATGTGGCCTTGTGAAAAACAATAGCTAATGGTAAACTAGTTGCAGACTAATCTCAGGGAGGAGCCTGGTTTCATCTTTGTCAGTTTTTAATATCCATTGACTAATTCAGTAAACAAACTTTTATGCTGTGAcaatgattaataaaatgtagcaTGTTTGTTTGATCATAATATACATTCTGTTTTATAAGTAATAAATGTACTTATATCATTCAA
>XM_034307110.1
AACCCCTGAAGCGAAATCTTGGAAAGGATTGATTACATCTATCTGTCTGGCTCATATCTAAGAGCTTGTGATTTCCACGTTTCACAGTGCTGCACTTTCCTTTTCTGGATCAGGCTTTgtctgagcagcagctctgttcGCATGGCCATGTACGTGTGCTTTACTTTCCTTGTGGCTGGGCTGTGTGTGCTGCCTGCTTTGCTGTGGACACTGTGTCCATACCTGCTCCAGGACTGCGCCTACATGCTGAACGCTGTGCGCTTCGGACTGCGCCTGGAGCGCTACAAGAGGAGAGCTCGCTTCTACAGCATTCTCGACTGTTTTCTGGATGCCGTGAGGAAACATCCACACAAACCCTTCATCCACTTCATGGGAGAGACGCACTCGTACTCAGACGTGGACAGAGAGAGTAATAAAGTGGCTCATGCTTTGCAGAAGGTGGCTGGACTGAAGGAGGGTGACGTTGTGGCCTTGTTCATAGGCAATGAGCCTTGTTTTATCTGGCTCTGGCTGGGCCTGGCTAAACTCGGCTGTGCCTCTGCTTTACTCAACTTTAACATCAGATCCAAATCTCTTCTGCACTGCTTCTCCTGCTGTGGTGCAAACGTGCTCATAGTGAGCGAAGAGCTCTGCGGTGCCATTGAAGAAGTTTTGCCTGCTTTGAAAGAGAAGAGCATCAGCGTGTATGTGCTCTCTGATGCATGCAGCACAGATGGCATTAAGGGCATCTCTCAGGCCATCACACAGGCGCCTGACGAAGCGCTGTCTCCATCACTCAGGGCTAATGTTAAATTCCACAGCACAGCGCTATATATCTACACATCTGGAACCACCGGTCTGCCTAAAGCAGCCATGGTGACTCATGAGAGAGTCTGGGCTGCTTCATTCATCCAGGCTGTTTCTGGGGTCACATCTGAAGACGTGTTTTACCTCAACCTGCCTCTGTACCACAGCGCTGGCTTCCTCATAGGATTCACCGGCTGTATTGAGAGAGGGAATACTTTAGTTCTGCGGAGGAAATTTTCTGCCTCTCAGTTCTGGGACGACTGCAGGAAGTATAATGttacagtgatgcagtacatTGGAGAAACAATGCGTTACCTCTGCAGTACACCAAAGAGAGATAATGACCGAGACCACAAAGTGAAGATTGCTATAGGTAACGGTGTACGAGCCGACGTGTGGAATGAATTTTTGAATCGCTTTGGGAATATTTACGTCAGGGAGCTCTACGCTGCCACAGAGGGAAACATCGGGTTTATTAACTACACCACTAAGGTTGGAGTGGTAGGCCGTGTTAACTTCCTCCACAAGTTCGACATCGAGAAAGAGGAGCCTGTGAGGAATGCAGACGGACTTTGTGTGCCAGCAGCTCGAGGTGAGCCTGGACTGCTGGTTGGGAAAATCACCATTAAGTCTCCATTTGTTGGTTACGCTGGAAACAAGCAGcagacagaaaggaaaagactcagaaatgtgtttgttgaaGGCGATCTCTATTTCAACAGCGGTGACTTGCTGAAAATCGACCATGAAAACTTCGTCTACTTTCAGGATCGGGTTGGAGACACTTTCAGATGGAAAGGTGAAAACGTAGCCACAACTGAAGTATCAGATATTCTGACTATGGTGGACTGCATTGAGGAAGCAAACGTCTATGGCGTCATGGTCAAAGGGCACGAAGGGAGGATTGGAATGGCGGCTGTTGTGTTGAAAGAAGGGAAGGAGTTTGATGGCATTGACACATGTAGAGTTTTAGCTAACTACCTACCAGTTTATGCCAGACCTCGTTTCATTCGCATTCAGAGTTCTTTGGAACTCACAGGAACTTTCAAGATGAAAAAGGTGAAGCTGGTGGAGGAGGGCTTTGATCCAGCGCTCATTCGCGACCCACTCTACTTCCTTGATCTAGTTGAAAAGAAATACGTTGCTCTCACTCAGGAAATGTATAATTCAGTGATTGCAGGAGACATTAAACTATAAGTctggaaatgtaaaaatatgagtatactttaaaaatgaaaggttGTTGTATGTGGCCTTGTGAAAAACAATAGCTAATGGTAAACTAGTTGCAGACTAATCTCAGGGAGGAGCCTGGTTTCATCTTTGTCAGTTTTTAATATCCATTGACTAATTCAGTAAACAAACTTTTATGCTGTGAcaatgattaataaaatgtagcaTGTTTGTTTGATCATAATATACATTCTGTTTTATAAGTAATAAATGTACTTATATCATTCAA

Function

symbol description
slc27a2 Enables CoA-ligase activity; enzyme binding activity; and long-chain fatty acid transporter activity. Involved in methyl-branched fatty acid metabolic process and monocarboxylic acid metabolic process. Located in endoplasmic reticulum lumen; endoplasmic reticulum membrane; and peroxisomal membrane. Is integral component of endoplasmic reticulum membrane and integral component of peroxisomal membrane.

NR:

description
very long-chain acyl-CoA synthetase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K08746 SLC27A2, FACVL1, FATP2; solute carrier family 27 (fatty acid transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919770.2 True 2273 mRNA 0.46 10 17316675 17322858
XM_034307110.1 False 2248 mRNA 0.46 10 17316673 17322858

Neighbor

gene id symbol gene type direction distance location
cep152 cep152 coding upstream 1431 17298741 ~ 17315242 (+)
cops2 cops2,LOC107557994,LOC107589327 coding upstream 18453 17291387 ~ 17298220 (+)
atp8b4 atp8b4 coding upstream 32747 17262433 ~ 17283926 (+)
isl2a isl2,isl2a,LOC107589357,LOC107662481,LOC107712508 coding upstream 180638 17130857 ~ 17136035 (+)
tmem266 tmem266 coding upstream 203070 17061938 ~ 17113603 (+)
duox2 duoxa1 coding downstream 97350 17420208 ~ 17423465 (+)
eif3ja eif3j,LOC108275014,LOC107688938,LOC107739069 coding downstream 114376 17437234 ~ 17443674 (+)
si:ch73-330k17.3 LOC108275018,LOC108436903,LOC107688943 coding downstream 122503 17445361 ~ 17447657 (+)
scamp5a scamp5,LOC103363822,LOC107395508,LOC108436905,LOC102221013,LOC103466429 coding downstream 136632 17459490 ~ 17467526 (+)
LOC113529594 LOC108275015 coding downstream 146062 17468920 ~ 17473913 (+)
G150152 sqrdl non-coding upstream 61336 17253667 ~ 17255337 (+)
G150148 NA non-coding upstream 79727 17236641 ~ 17236946 (+)
G149729 NA non-coding upstream 742801 16540599 ~ 16573872 (+)
LOC117597920 NA non-coding upstream 842445 16460380 ~ 16474228 (+)
G149723 NA non-coding upstream 867533 16446039 ~ 16449140 (+)
G150261 LOC108275011 non-coding downstream 107285 17430143 ~ 17434377 (+)
G150265 NA non-coding downstream 123391 17446249 ~ 17446460 (+)
G150268 NA non-coding downstream 134062 17456920 ~ 17457135 (+)
G150407 NA non-coding downstream 379696 17702554 ~ 17702758 (+)
G150590 LOC108274445 non-coding downstream 509908 17832766 ~ 17840449 (+)
LOC113529564 ano9,LOC108442698 other upstream 1494082 15807990 ~ 15822591 (+)
svip svip other upstream 1591582 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 1663989 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 3487342 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 3539802 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 511379 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 859696 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 1352152 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 1398737 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 1424969 18747827 ~ 18796259 (+)

Expression


Co-expression Network