LOC113530066 (prkar2b,LOC108275286,LOC107676465,LOC107732287)


Basic Information

Item Value
gene id LOC113530066
gene name prkar2b,LOC108275286,LOC107676465,LOC107732287
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15200015 ~ 15217057 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919772.2
ggatgctcTCTGTCGGATTCTCTGCCATTTTCATGTGGACGAATTAGATAAAGGACCGCCATCGAAAACAAATGGAAATAGGCGCCATATGGGACTGTGAGAGGAGGTCCATCACTCGTTGTGTCGATATTGTTCCAGGTTCGTCTGGCGTCGGTTCCGTTCCCTTCAGCTGACGCGAGAGCGCACACACGGAGCTTCATCAGCCGAGCCCTGCCTGCATTTTGCACGTCTTCCTCTGGAGCCCTGCTATCAGGAATGAGTATAGAAATCCCCGAGGGCTTGACGGAGCTTTTACAGAGCTTTACGGTGGAGGTGTTGAGGAATCAGCCGCGGGATCTTTTGGAGTTCGCCCTGCAGTATTTCACCCAGCTGAAGGAGAACGAAGCGAGGGCGGCCGCTTTCGGCAATGAGCAGCATCCGGCTCTGCGCGCAGGCAAAGCCGTTAACTTCATCGAGGAGGCCATGCAGATCGACTCAGAGAACGGAGAGGACGAGGATGACGATGAGGAATTCGTAGCACCAGTCATAAACAGATTCATAAGACGACCTTCTGTGTGTGCAGAGGCCTTcaacccagatgaggatgaagaggacAAGGAGCCCAGGGTGACTTACCcaaaaacagatgaacagagaCAAAGACTACAGGAGGCCTGCAAGGACatacttctttttaaaaatcttgacCAGGAGCAAATGTCCCAAGTTCTGGATGCCATGTTTGAGAAGACAGTTTCTACTGGCGAACACATCATTGATCAAGATGATGACGGAGACAACTTTTATGTCATTGAAAGAGGGACTTTTGACATCCTTGTGAAGTCAGAGGGCACCACAAGAACAGTGGGCTCGTATGACAACCGTGGGAGTTTCGGGGAGCTGGCGCTGATGTATAACACCCCACGCGCCGCCACCATTGTTGCTACCTCACCTGGCGCCCTGTGGTGCCTAGACCGATTAACATTCAGAAGGATCATTGTAAAAAACAATGCCAAGAAGAGGAAAATGTATGAAGCTTTCATTGAGACCCTTCCACTGCTCACATCTTTGGAGGTCTCAGAAAGAATGAAGGTGGTGGATGTCTTGTCATCCAAAGTGTACAACGATGGAGAGCAGATCATTGCACAAGGTGACCTGGCAGACTGTTTCTACATCGTAGAGTCAGGTGAGGTTAGAATCACCATGAAGAGGAACCGGTTGAAAACAGATTCAGAGCATGACGAAATGGACATCGCCACATGCACTAGAGGGCAGTACTTTGGAGAATTAGCCCTTGTTACAAACAAGCCAAGGGCCGCTTCTGCATATGCGGTGGAAAACGTCAAGTGTTTAGTAATGGATGTCCAGGCATTTGAGAGGTTGCTGGGGCCGTGCATGGACATCATGAAACGCAACATCGCTAACTATGAAGAGCAGTTGGTCACCCTTTTTGGGAGTCAGATGGAAATAGAAGAGTCAAgtgcataaaattaaaaacaaaaaaacgctcCAATGCAACATATTGAAAAGATATAATAATGGTGAGTACAGGTCTCTCACCATTGTTCAGATGCCATATgatcataacttttgaacttcaAAGTTATTGTTTTGCATCACAAAGTGAAGCTCTGGTGTGTCAGTGATAGTGATTTTTTACATGTAGGATAAACTTAACAGGTTATGTaaggtttgaaaaaaaagagtttcatttttcattagtAAAGTGTTTTGTTATATTGGGAATAAACTGTTTATCCAGCTATTTAGTAATGTCATTATCTCCactgctgtattttattttggagtGCTAGGATaggattgttttatttttttccagttatttttttatttttgagctCAGGCTTTGACAGATAAAAGTTGAAATCTCCTGTCACTCATTTGTCATGTATTTCAAAAATCTTGTTTATGAATCCTGTACATTTTGAAGTACAAATGGCAATGTTCTTAACACATCTTAATTACAATATCCCCAAGTTTTGTCTTGATTAATATCTTCACAGaatgagcaaacacacaaacataaatttGGGACTATACTGTCTGTGAGTGTATGAGGATGATACAAACCAAAACCTATTCATATATAAACTTGTAATGGTTTGATTACAGAAAAGGGAAATATAAGAGTGTGTATGCAAATTGCACTTTGCTGTCAGAatcatggaaaaagaaaaattgcacATTAACTTATGCTGTACACAGTAGTTTAGAATTTTAGTTCCCTCATTAATAAGGAGAATCCATGTAGTATTTTAAAGTACTGTCTCAAAGGTAGCGTATTTATTGTACATATACATGTTAACGTTTATTTATTAACCCCCAGTGTTTCAGAGTGTAACAAGACATATTTAATGTTCGTAAGATAGCTTTCTGTTGCCGATTATTTtctacggtgtgtgtgtttttgttaaaaaaataataagaataattattATCAAATATGTTATGGcatattactttattttactctAATATGCTCATTTGCCTTTAAAAGTTTTACTTCTGAACTGCAATATGTGTCACCAGTTGTAGTGCTGTTTTCCATTATTCCATccattacagtattacagtgtcTTTGCTCCACTGGCAAGTAATCACTTTTTGAATTTTTCTTCCAATAACATTGATGAGATGAGATTTATTAATGTCTTCATAACAATGTTGCACCATGACACTGTGTGAGAGTCTACAGCTTCTGTCTCTGAGTAGCCCGCCTCAACTGTGCGCTTTCATTGTAGGATTTTCTGTTCATTGTTTTATAAGCAGTACACTCCTTAAAGACTTTAAATGCTGacctgtgtttatatttatatcatttatctGAATTACCATGTTCAAAAGTAGCTCTTTGCATTAACTGCTCACTATTTAATGACATCCATGTAGAAAGGTCTACTCTTAATGCCAGAGGCACTAGTACTATTGTCTGTGATATTTCATTTTccattcaaataaaatacaattttgtattaaa

Function

symbol description
prkar2b Enables cAMP-dependent protein kinase inhibitor activity; protein kinase A catalytic subunit binding activity; and ubiquitin protein ligase binding activity. Involved in negative regulation of cAMP-dependent protein kinase activity. Located in centrosome; cytoplasm; and plasma membrane. Biomarker of granulosa cell tumor.

NR:

description
PREDICTED: cAMP-dependent protein kinase type II-beta regulatory subunit-like

GO:

id name namespace
GO:0045859 regulation of protein kinase activity biological_process
GO:0005952 cAMP-dependent protein kinase complex cellular_component
GO:0008603 cAMP-dependent protein kinase regulator activity molecular_function

KEGG:

id description
K04739 PRKAR; cAMP-dependent protein kinase regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919772.2 True 2977 mRNA 0.40 11 15200015 15217057

Neighbor

gene id symbol gene type direction distance location
hbp1 hbp1,LOC107701066,LOC107754327 coding downstream 345 15194318 ~ 15199670 (-)
gpr22b gpr22,LOC108428781,LOC107754326,LOC107561157,LOC107701065,LOC107676451 coding downstream 29308 15164565 ~ 15170707 (-)
golt1bb golt1bb,LOC108275057,LOC108428784,LOC107676462,LOC105895666 coding downstream 50733 15145412 ~ 15149282 (-)
pthlhb LOC108274596 coding downstream 82237 15116022 ~ 15117778 (-)
LOC113529696 LOC108274568,LOC108428736,LOC104940688,LOC106573136,LOC103380577,LOC102196233 coding downstream 85150 15113679 ~ 15114865 (-)
irx5b LOC108275041 coding upstream 64801 15281858 ~ 15285227 (-)
rpgrip1l rpgrip1l coding upstream 168031 15385088 ~ 15405178 (-)
hsd17b2 LOC108275401 coding upstream 231685 15448742 ~ 15452712 (-)
gpia gpia,LOC108274969,LOC108428767,LOC107679975 coding upstream 237123 15454180 ~ 15465781 (-)
lsm14aa lsm14aa,LOC108274970,LOC108428766 coding upstream 251665 15468722 ~ 15478312 (-)
G148919 slc25a3,LOC107569351,LOC107754323 non-coding downstream 62008 15136126 ~ 15138007 (-)
G148920 LOC108275086 non-coding downstream 67518 15130776 ~ 15132497 (-)
G148926 LOC108275086,LOC108428785,LOC106523631,LOC105938579,LOC107388471 non-coding downstream 71509 15127232 ~ 15128506 (-)
G148833 NA non-coding downstream 162553 15037225 ~ 15037462 (-)
G148612 pdhx non-coding downstream 517262 14681515 ~ 14682753 (-)
G148992 NA non-coding upstream 114150 15331207 ~ 15331432 (-)
G149057 NA non-coding upstream 160146 15377203 ~ 15377406 (-)
G149301 NA non-coding upstream 508194 15725251 ~ 15725901 (-)
G149305 fancf non-coding upstream 534102 15751159 ~ 15752470 (-)
G149312 NA non-coding upstream 541227 15758284 ~ 15758501 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 111955 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 387310 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 1364260 13825782 ~ 13835755 (-)
trnar-acg_1 NA other downstream 1409470 13790287 ~ 13790545 (-)
syt8 LOC108275171,LOC103035847,LOC108428822,LOC107742052,LOC107595270,LOC107675261,LOC107549275,LOC107758745 other downstream 1734799 13457100 ~ 13465216 (-)
LOC113529695 NA other upstream 2913 15219970 ~ 15228985 (-)
LOC113529470 LOC108275326 other upstream 494936 15711993 ~ 15719575 (-)
islr2 islr2,LOC107662462 other upstream 764107 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 924062 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1836296 17053353 ~ 17058906 (-)

Expression


Co-expression Network