sema7a (sema7a)


Basic Information

Item Value
gene id sema7a
gene name sema7a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15997889 ~ 16005363 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919790.2
AACCGATCCGGAGCGCGCGCTCGCCTCAATTAAGCGTGTGTTGACAGAGCAAAACCCTGTTCTTCGCGATCTTTGACGGATATTTTGCTAACTGCTAAAGTCAGATAAATAGCTTTTACTTGGAGACTTGAATCAGCAGGAACGAGGAGTCACACTGGCGTATCTGGCTGATTTAGGAGAGGTTTTTTTGGACTGGATACAGTAGACCTACCCTCTGGGATGGGGATTGGAGAGTGcatttgctttgtgcactgagTGTGAGTTTGGGAAGAGAAGAGTGATCGACAGCGCGTTCTCCATTACAGAGGCACCTGAGTGATACAGAAATGAAATTCCTCTGCAAGTCGCTTCTTTTTGGCTCGTGCTTTCTGTCCGTTTTTTGTTCATGGGCAATTCCCAGATTAATGCTGCGACAAGATAATTCAAGTCAGCCGCTAATCTATAGTAAAAATGTGAGCCATACTGTCTTCTGCCTTCAACATGGATCTGAGAACTTGCTCTTGGGGCAACTAAACTCTGTGCTGGAGCTGAACGATGGTGGTGTAGTAGagAACTTCACCCTGACAGATAACGGAGATGACTTTTGCGATGGGAGCTCTTGTGAAATCGTCATAACAGTAATTGAAGAATTCCAGGATTGGCTTTTTGTCTGTGGGACAAATGGAAGACAACCAACGTGCTGGAAGCTGGATCCCAGAAAAAACAATCGCTCCCTTGTGGTTGTGGAAAGTATTGATGGCAGTGGCATCTCACCTTACAAATACTCACAAAACTCTCTGTCACTTGTAGTAGATGGAGACCTTTATGCTGCAGCGCCACTTTACTTGGATGGAACATCACTACATTTccgaaggcaagctggcagccAAAACAAATTATGGATGTATGATCCATGGATTACAGAACCAACATTTATATCAGCTTTTGTGGCCAGCAGACCTGAAGACCCATTGAATGAGAAAATTTATGTTCTCTTTCGAGAGAAAAACTCAGACAGCAGTCCAGAAGCTGACCCCTGGATCTCTAGGGTGGCCAGAGTATGCAAGATTGACAAAGGAGGGCCTAAGAgatttttccaaaacatttggACATCTTTTCTGAAGGCACGCCTTGTGTGTGCGATTCCTGGAGAGTCGCTATATTTTAATCGTCTGCAAGACATCTTTGTGCTACACTCTGATAACTGGAAGGAATCTCTTGTCTATGCTCTTTTCTCAAGCAGCTGGAATGCCACAGCTGTTTGCATATACTCCTTAGCTGAGCTTGATGACATTTTTGAGAAGTCCAGCTTCAAAGGATACAATGAAGATATTCCCAACCCAAGGCCAGGAACCTGTGTGGGGGACAGTAGGTCTCTGCCCACCCCTACTATCCGTATTGTTAGAAACCATCCAGAGATGACTGACTGGGTCCATCCCATACAGAAACATGCTCCTTTCTACATCAGCAATAACAATTACACCAAAATTGCAGTGGATAGGGTGCAGGCCTCAgatgaaaaaatgtacaatgtgttgCTGCTTGCCACAGACACTGGAACGATCCATAAGATATTGGAGCATGATTCCAAAGCCTTTATAATTTCTGAGACAAGTCTTTGCAGTGGCGCTGCTCCTGTTCTGTCTATGAAACTACACTCTGAAAAGAGAAAGTTGTTTGTTGGATATCCTGGGCAAATGTCTGTCTTAGATCTGCAGGCGTGCCAGGACTATAATACATCCTGTGAAGACTGTGTTCTTGCCAGGGACCCATACTGTGCTTGGACTGAAAATGGATGCACCTCACAAATTAAAGGGGGGATTCAAAATATTGCCACTGGTGAGCCACACATATGTTCCATAAATTCAGCTCTAAAAAGACTCAAGCGAGATGTACCATCTTCAGTTTCAACCCCTCCAATAGTGCACACTGTGCCCAAGGGTTTCCCTTTCTACCTTTCCTGCCCAATTGACTCCCATCATGCCACCTACAGCTGGGAGCACAGAGGTGAAAGTGAACCATGCCAGAGGACTCAGTCTGACTGCCTCTATCTAATAAAATCTGTCAGTGCACATGATTATGGAatgtacagctgtgtgtcaaGGGAGCGTAACTACAGCAAAATGGTTAAAGTATATCAACTGAATGGTCCCTCTGAGCCACGGACCCTAAACAGAGCCTTCAAACTCACAGCTGAGAAAGAATGGCTGTTGGCTGTATTCACTGCACTTCTTTTCAGAGAACACTAATCTGTCTAAAGAGCAGTATATCTGCTTCTGTCCTTAAGCTTCTTTCCCTCTTGGTCTTAGTCAGTAATGCAATAATATCAAAGGTTGCCAGGGAAAGCAAGTGCGTGTGCATGAAGTGCACGTAAAAAGAAACTAGACAAAAGTGTAGGTCAGTGGATGTGATGGGAGAGGGTGATACCACTCCCAAGAATTTCCTTCCATTACTGCTGGGTCTTCATCCTGTATAAAGTCTAGCCACTGAGCCATGTTCAAatacagttaggtctggaagtatttggacaatgacagagtttttgtgattttgcctttatacaccaccacaatggatatgaaataaaacaatcaaaatgtgatcgaagt

Function

symbol description
sema7a Predicted to enable chemorepellent activity; integrin binding activity; and semaphorin receptor binding activity. Predicted to be involved in several processes, including cell surface receptor signaling pathway; generation of neurons; and positive regulation of macrophage cytokine production. Predicted to be integral component of plasma membrane. Is expressed in Purkinje cell. Orthologous to human SEMA7A (semaphorin 7A (John Milton Hagen blood group)).

NR:

description
semaphorin-7A-like

GO: NA

KEGG:

id description
K06529 SEMA7, CD108; semaphorin 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919790.2 True 2588 mRNA 0.44 14 15997889 16005363

Neighbor

gene id symbol gene type direction distance location
ccdc33 ccdc33 coding downstream 61311 15904320 ~ 15936578 (-)
pkp3a LOC108275089 coding downstream 133187 15848138 ~ 15864702 (-)
ano5a ano5,LOC107728425 coding downstream 195262 15772414 ~ 15802627 (-)
LOC113529694 LOC108274566 coding downstream 226404 15769696 ~ 15771485 (-)
slc17a6a slc17a6,slc17a6a,LOC107555703,LOC107677426,LOC107570095 coding downstream 228425 15759626 ~ 15769464 (-)
man2c1 man2c1,LOC107752311 coding upstream 9557 16014920 ~ 16024858 (-)
ca12 ca12 coding upstream 22792 16028155 ~ 16043852 (-)
dapk2b dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496 coding upstream 116294 16121657 ~ 16140904 (-)
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding upstream 136233 16141596 ~ 16165999 (-)
cib2 cib2,LOC103027299,LOC107752320,LOC107573330,LOC104917862 coding upstream 175554 16180917 ~ 16199115 (-)
G149366 NA non-coding downstream 93987 15903692 ~ 15903902 (-)
G149364 NA non-coding downstream 95247 15902440 ~ 15902642 (-)
G149363 cyp11a non-coding downstream 99728 15897890 ~ 15898161 (-)
G149312 NA non-coding downstream 239388 15758284 ~ 15758501 (-)
G149305 fancf non-coding downstream 245419 15751159 ~ 15752470 (-)
LOC113529609 NA non-coding upstream 63066 16068429 ~ 16092930 (-)
G149495 NA non-coding upstream 87709 16093072 ~ 16095175 (-)
G149631 rps27l,zgc:136826,LOC107598918,LOC107752326 non-coding upstream 175543 16180906 ~ 16238108 (-)
LOC117597941 NA non-coding upstream 225251 16230614 ~ 16231809 (-)
G149643 NA non-coding upstream 243798 16249161 ~ 16251085 (-)
islr2 islr2,LOC107662462 other downstream 5795 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 278314 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 768904 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 909829 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 1185184 14810004 ~ 14812705 (-)
acsbg1 acsbg1 other upstream 135756 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1047990 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2199288 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2297779 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 2299275 18304638 ~ 18304801 (-)

Expression


Co-expression Network