si:dkey-42p14.3 (LOC108274539)


Basic Information

Item Value
gene id si:dkey-42p14.3
gene name LOC108274539
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17562187 ~ 17564164 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919792.2
GAGAAACGTAAATTTACATTCACATCTTCGAAAGCATTATCGTACATAACATTTAGTTAGTGAAACAGAAACTACTGGTTTAGTCGTGAGCACAGTCCCTTCAGGgacgctaaaaaaaaaaaaataaaaaaagttggaAGTGTAAACCTTCGtagtaccttttttttcagtagctTCCTGGTCATTACGGTAAAAACCCGAATATACGCGCACTACAGTTTGAACAGCCGCTGGCTTGAGTGCGCGCTGCAGGTATCTTAGCAACCAGGCCAAACACTGAGGAAGCGGAGGCCTGAGCAGTGTTAATGAAGCGCGATCATGTCAACACCGCGGGAAAAAGAGGCAGCAAAATACCTCGAAAATCACAAAATCTTAGAACTAATGAACAACTTAACTAGCATGCTCTTCTATTACAGACCAGAACAGCCAAGGGAATTCCTGATTTCCCAACTTGAGCAAATGCAAGCATCCAAGCTTCAGGCGGCTGGTATTCCCTGTCTGTTTGATGATTCCAACctggatgcagtgtgtggtaTCCTAGATCCTACAAATCAAGGGTACATCTCTTACAACCAGTATAGAGAGGCACTGAAGACACTTGGTATCCAGCATTTCAGTGAGTGTCCTGAGGGTCTTGGAAATGACAGGATATCACATGAGACATTCAAACGAGAAGCgaAGGAGTGCCTTCTGAAAAATGCAGCAACATTCCAGATGTAATTATTTAACCATTATTACTGTCTAATTGTTTTGTAAGCTTATTAAATGTAGTGTCTTTAATGCTGTGTCAATGTTTGAAGtactaaatattaaaagtatCTTTTGGA

Function

NR:

description
EF-hand calcium-binding domain-containing protein 10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919792.2 True 827 mRNA 0.41 4 17562187 17564164

Neighbor

gene id symbol gene type direction distance location
lamb1a lamb1,lamb1a,LOC107662456,LOC107595246 coding upstream 10663 17528241 ~ 17551524 (+)
lamb4 lamb4 coding upstream 36406 17507860 ~ 17525781 (+)
LOC113529626 LOC108275292,LOC108436907 coding upstream 57291 17499317 ~ 17504896 (+)
ubl7a ubl7a,ubl7,LOC108274434,LOC108436908,LOC107703185 coding upstream 65726 17490835 ~ 17496461 (+)
LOC113529627 NA coding upstream 72824 17481462 ~ 17489363 (+)
znf800a znf800 coding downstream 12544 17576708 ~ 17594730 (+)
grm8b grm8,grm8b,LOC107659486,LOC107698172,LOC107598887 coding downstream 32909 17597073 ~ 17723081 (+)
pot1 pot1 coding downstream 196154 17760318 ~ 17803798 (+)
gpr37a gpr37 coding downstream 241961 17806125 ~ 17811964 (+)
wasla wasl,wasla,LOC108275301,LOC107753630,LOC107659464,LOC107598884 coding downstream 326723 17890887 ~ 17910861 (+)
G150268 NA non-coding upstream 105052 17456920 ~ 17457135 (+)
G150265 NA non-coding upstream 115727 17446249 ~ 17446460 (+)
G150261 LOC108275011 non-coding upstream 127810 17430143 ~ 17434377 (+)
G150152 sqrdl non-coding upstream 306850 17253667 ~ 17255337 (+)
G150148 NA non-coding upstream 325241 17236641 ~ 17236946 (+)
G150407 NA non-coding downstream 138390 17702554 ~ 17702758 (+)
G150590 LOC108274445 non-coding downstream 268602 17832766 ~ 17840449 (+)
G150592 NA non-coding downstream 347473 17911637 ~ 17912583 (+)
G150609 NA non-coding downstream 350461 17914625 ~ 17915242 (+)
LOC117598020 NA non-coding downstream 566682 18130846 ~ 18139145 (+)
LOC113529564 ano9,LOC108442698 other upstream 1739596 15807990 ~ 15822591 (+)
svip svip other upstream 1837096 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 1909503 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 3732856 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 3785316 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 270073 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 618390 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 1110846 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 1157431 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 1183663 18747827 ~ 18796259 (+)

Expression


Co-expression Network