neil1 (neil1)


Basic Information

Item Value
gene id neil1
gene name neil1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16009837 ~ 16014155 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919794.2
CTGACTGCTGATACGCGAGCCTGTGGAGTCGAGCGCAGGAACTACACCTCCCATCAATCCACAGTTTCCGCTCTGTAAACATGGCGGTGTTTTGGACAACAGCGTGAGTAAAGTACAGTAGCGTGCCACTAAACAAAACTTTCTGCTCCTTCATACCGACTACAGCTATTACAGAAACTGTACCATTGTGCAACAACTTGGATCGAATCTTGAATCTTTTTATACCATTATATTACGAGTTAAGGAACTGCCCTTAAAGCCAAACTCCACCTGCCGTTTCTTTGGAGTTTCTTGGCCTCTTCTGAGTACGCTACTAGCATCCAGTTTATCTGCACAGCGTCCACAGCGCCATGCCCGAGGGCCCTGAGCTGCACCTGGCCAGTGTGTTTGTGAACACAGCATGTGCTGGGCTGATTTTCTCCGGCGCTGTGGAGAAGTCTGAGGTGAGTAAAGAAGCCGAGGTGCCGTTTGCCAGCGATGCGTACCGAATCAGCGCCACATCCAGAGAAGAAGTGCGGCTCACACTCACTCCAGTCAAACCTGACACACGGAGTAAAGGCAAACCAGAACTGAACCACGCGCCTATGGATGTGGTCTTCCGGTTCGGGATGTCAGGTTATTTCCGCTTCACTACGTTAGCAGAACTCCCTAAACATGCCCATCTGCGCTTTTACACCAAAGAGGTTCCTCAGAGAGTGCTGAGCTTGGTCGATACGCGCAGGTTTGGCAGCTGGCAGCCTAATGGAAGCTGGCAAAAAGACCGAGGCCCCTGTGTCATGTCTGAGTATAAGAGCTTCAGggAGAATGTTCTGTCCAATTTGTCAGACAAGGCATTCGACAGGCCAGTCTGTGAGGCTCTCTTAAATCAGAAATACTTCAACGGGATTGGCAACTACCTCCAAGCAGAGATTCTGTACAGATTAAAGATCCCTCCCTTTGTGAAGGCGAGAGCTGTGTTAGAGGGACTCAAACTAAAACATGAAGAAACAATGAACGTTAAAGAGGAGCCCAGCACAGAGGCGGCAGAGAAAACAGATGTGGATGAGAAAACTGAGAATCCagacctcctctctctctgtcacacggTACCACTTGAAGTGATTAATCTGGgtGGAAAAGGATATGACCCAGGGAAGGGAGATTACACAGAATTTGTTTCCTGGCTGCAGTGTTACAGCGTTGATGGGATGAATTCAGTAAGAGACCACAATGGAAGAACTATGTGGTTTAAAGGTGCTCCTGGTCCAATGGCCCCTAAAGCTTCCAAATCTCCCAAggcaaagagaaaaataaagaaagatgaCTATACAGATACAAAGAAGGAAAAGCTTGTAAAGAAGGAACCAGGGGCTGGAAAAAGGGAGAAGGATGAGCCTAAGAAACAGAGTGGCACCAGACGGCAGAAAGCCAGCAAGAGTGGACTAGAAGCAGAAGCAGCTGATGACAGCAGAAGACCAAATACACGCAGAAAGAGTAGCGCAACAGGTCTAAGGCAAACCAGAGCTAAGAGTACAGGAAGCCCAAGTGTACGGAAAGCTAACACTAAATCTAAGGCCACCAGCAGACCTCGCAGGAAGAGCAGTAGAACTGCTTAAGggcagtttgtaaaaaaaaaaataataatttcatgaCTGCTGGATCAAGAGGCaactgtctgtatgtatgtaaatactAAGCTGTAGAGGGGCAGTTAATAAGCAAATCTAGCCATGCACATCTGGTTCACATCAGCTATTGCTTGGAATAATCaccattttatatttgtaacacatttatctgaaaaataaatatattatatataagttTC

Function

symbol description
neil1 Predicted to enable DNA N-glycosylase activity and DNA-(apurinic or apyrimidinic site) endonuclease activity. Predicted to be involved in base-excision repair. Predicted to be located in chromosome. Predicted to be active in nucleus. Orthologous to human NEIL1 (nei like DNA glycosylase 1).

NR:

description
endonuclease 8-like 1

GO:

id name namespace
GO:0005488 binding molecular_function
GO:0004518 nuclease activity molecular_function

KEGG:

id description
K10567 NEIL1; endonuclease VIII-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919794.2 True 1807 mRNA 0.46 10 16009837 16014155

Neighbor

gene id symbol gene type direction distance location
commd4 commd4,LOC107576274,LOC107757759,LOC107598913 coding upstream 1014 16005670 ~ 16008823 (+)
stra6 stra6 coding upstream 29592 15968543 ~ 15980245 (+)
LOC113530122 cyp11a,LOC108442685,LOC106561846 coding upstream 104508 15897676 ~ 15905329 (+)
stoml1 stoml1 coding upstream 114383 15891653 ~ 15895454 (+)
nr2e3 nr2e3,LOC105892475,LOC107595245,LOC107589312 coding upstream 119098 15888107 ~ 15890739 (+)
trnav-aac_18 NA coding downstream 27020 16041175 ~ 16041247 (+)
si:dkeyp-73b11.8 NA coding downstream 31420 16045575 ~ 16048154 (+)
usp3 usp3,LOC107659494 coding downstream 34929 16049084 ~ 16060168 (+)
fbxl22 fbxl22 coding downstream 46933 16061088 ~ 16066983 (+)
LOC113529940 LOC108275177 coding downstream 78917 16093072 ~ 16106147 (+)
G149276 NA non-coding upstream 191469 15771838 ~ 15818368 (+)
G149268 NA non-coding upstream 254925 15754665 ~ 15754912 (+)
G149248 NA non-coding upstream 297920 15711013 ~ 15711917 (+)
G149131 NA non-coding upstream 440350 15567836 ~ 15569487 (+)
G149091 cpne8,LOC108274474 non-coding upstream 525934 15483074 ~ 15483903 (+)
G149427 NA non-coding downstream 10689 16024844 ~ 16026512 (+)
G149428 NA non-coding downstream 13452 16027607 ~ 16028019 (+)
G149552 NA non-coding downstream 240529 16254684 ~ 16255314 (+)
G149574 NA non-coding downstream 314101 16328256 ~ 16328539 (+)
LOC117597940 NA non-coding downstream 324435 16338590 ~ 16341963 (+)
LOC113529564 ano9,LOC108442698 other upstream 187246 15807990 ~ 15822591 (+)
svip svip other upstream 284746 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 357153 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2180506 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2232966 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1820082 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2168399 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2660855 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2707440 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2733672 18747827 ~ 18796259 (+)

Expression


Co-expression Network