ice2 (ice2)


Basic Information

Item Value
gene id ice2
gene name ice2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16547325 ~ 16566002 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919801.2
CTTTTTCCTGTTGCACTGTTTGTACCGGTCGAAAACATCCACCTGCGTATATAGCTCACTACATAAGATGTAGAAAccgttattttatatttcacttGTGTATGGAGGAAGGAGCTACTTTTGAGTCGATATTAACACTGTGTTTGTGTCCACGGGCATGGAGTTGAAGTGGGATCAGGCTCCTGTCACAGACCCGGGCCCCTTTTCCAAAGATGTTTTTGATAAATTCTCTCTGGCGCCCACCATAAAAGAGCTCTGGGCCATGTTACAAAGCCCAGATGAAAAAGCTGATGTGAAAAAAGACACAAAGGTAAATCCAGCTGCTCACGCCTCACAATCCAGTCGTGCCAAAAGTAACAAAACCACGCCACAGACCAACATCAAACATGGCCACGGAACTTCAGACTGCAGAGAAGCTCTTCCTGAATGTAAGAATAAAGTTGCTGAGACTATGGAAGAGATATGCTTCCCTACACCGAAAGTGCCCTACCCCTGCTTCTCCTCTCTCAGCCGCAAAGAAAGAGTGATGCATATATACTCCATTAAGAACAACAAGCAGGACAAAGCTCCACAGaatttaATAGAGAAGGTGAAGAAAGAGGTGGCAGAGTTTATGAAGTACCTGCAAGATGTCTCTAAAGTGTGCGCTGATGATTATAACTTCATGCCCATGGGAGCTACTCACTATTCAGAGGAGTATTTTAAACATTGCTTGGACCACATGAGGAACTACCCACAGGTTTACAGTATTCAAGAAATCACCAGTTTAACAGGGGGGAAATTTGTCCCCGACATTTCGCTCAACTTTGAGAAACGGCTGCTTGCAATGGGCACCATAGACATGGTAGAAAAACAAATGCTGccagaaaacacacaacttGCAATGGATTATGAGTCCATTTCAGCTGTGAATCCTCCAGTTAAAAAGGCCACTCGTTTCCACACAccTATCAGCAGTGACACAAATGCAGAGAAGCTCAGTGCTACATATGAGCCACATGTGTGTCTAGCGAAAGAGGCCTTCCTTCAGCTGCTGAACAACAGTGTTGGGTTTACTGAGGCATGGGAACTGCCGGtctgtgtgaaagcaaaccCTGCAAAAGGTAGCACTCAGAGTAAAACGGTGTACATCGACCCTCCTCTGCTGAAGACAGAGatgacatggagagagagaaatcaccTCTTTCTTGAGGAGAGTGTAAAACTGGCATACAAGAAGACAGGCTCAAACCCTGTGTTTTTCCTCACATCAGAGGACTACTGCAATAGGACTGACTTCGCCACAGCAGAGGCGAGCAGTAGACCAGTTGTTTCATTTGACAGCACTGATATAGATTTTGAAGCAGATTTGACCGACTTGGAGTCATTTGGGGAGTCTTGTCAACTGAAAAAGAAAGTCAAGGACAATGATTCGAAAAATCAAGCACCCTCTAAAAGTGAAACACTGGGATTATCAAAACCTAAAGTAGAATTAGATAAAGGCAAAACCTCACACAAATTACCTGAAGAAGCTTCCCCACCTAAAGACATTATATCAGCACTTTCTACACCAGCAAAGGAAGAAGCGCAAGATGAAACAGCCAGGGCGAGTGTAGAGGACAGCTCAGTGGATGAGAGTGCTGAGACTACTTTGAATTCTGTATCTGAAGAGGATCCTTTGAGCTCTACTGTAGAAGAGACCGCAGAATGTACACCAACCAAGCGACTAAGGCATTCCTCTGTAAACACAGATTCTGATGAGGAACGCCTCATTATTGATGACCCAAGCTCCCCACTGAGCAGCGTAGCAAGTAAGAAGAACCAGGTGACACCAGCAGCTCCGGAGAACTTCACTGACCCCAACACATCCTCTGTGAGTGAGCTGAATGTGCTCCTAAGTCCCAGCAGCTCTGCTAAAGGAGCTAAGAAAGGAGCCAAGAGACCCAGAGTCTCGGCGGATTGCGACCAGCTAGGGCACATTTTGCGAATGCAAAATGCCATGCTGAAATCCACGACGGCTAAAAGCCAAGAACCTCCAAAAGCACCAGCTGCAGACTGTCGTCCACCAGAACCAAAACCCAACCACCAAACTGTGTCTCTGGTCAAACCTAGTGTGTCCTCGTACCTGGACTTGGAACACAGAGAAGGGCTGCAGAATGAGCCTGCTGCTCCTGCCACCTCTCAGCCCACAGCACAAAGAAAAAGGCTGCTGAGAGAGGATCTGCTGGTGAGTGCCGAGGATGAGGAGGACTATGAAGCTCCTGAGGAGGGCAGTGTACTGTATAAACTCTACAGCCTGCTAGATGTGCTGCTGATGGTGCGCAGCACTGTGTCCATTGCTCATCCCAGACATGACCAAGAAACTTTCAGGGCGGTCCCTGTGCATGTGCTGCCCAAGCTGGAGTACCAGCTGTGTTACGGAGCCGAGTGTCTGACCCATGCTGAGGCCTGCCAACTGTGGGCTGAGCAGCAGCTTCACTCCAGCACGGTATCTTTCATAGgtcggATTAATGCACACACATCAAAGATTGTGCAGCTTCAAGAGCTCAAGCCTGACTGGATCCAGAGCACCTCCTGTGATTTCAAACCAGCTAGGTGCTTGAACACTCTCCACCACATACTGAAAAAAGTCATGAGCTTACAAGAGGGGAGATATCTGTTGGGTCACAAATCTGGCGAGGCTTTTTTAACCATATTCAAAGCTAGTGATGGAACAAAGCCCACTCGCAGTGTCTGTGACCTCCAGGCTGTCCACTGTGGACCTCCTGTAATCCCAGAGGCCAAAATCCCCTGGGTTCCAGTGGATCCCTTCGTTCTTATGCCGTTTCACAAGAAATACTGTAGACCTCCGTGCACCTTCCCTCCACGTCCACCCACACAGCCTAAGGCAGGAGGGTGTAAAGGAGCAAGGCTGGGTAACAGCATGACTGCATCTGCACAAGGGTGGCAAGGCTCAGCAGGGACGCCGAGTCAAAAGCGGaagaaaaagaatagaaaaaaaaaacaacagacaaataaaaacacatgtacAGAATGAAGAAGGCCA
>XM_034307590.1
GGTgtattggatttaaaaaaaaattctgctatGTTTTCATTGTGCAGTTTTGGGGTAACTAAAgATGAAAAAGCTGATGTGAAAAAAGACACAAAGGTAAATCCAGCTGCTCACGCCTCACAATCCAGTCGTGCCAAAAGTAACAAAACCACGCCACAGACCAACATCAAACATGGCCACGGAACTTCAGACTGCAGAGAAGCTCTTCCTGAATGTAAGAATAAAGTTGCTGAGACTATGGAAGAGATATGCTTCCCTACACCGAAAGTGCCCTACCCCTGCTTCTCCTCTCTCAGCCGCAAAGAAAGAGTGATGCATATATACTCCATTAAGAACAACAAGCAGGACAAAGCTCCACAGaatttaATAGAGAAGGTGAAGAAAGAGGTGGCAGAGTTTATGAAGTACCTGCAAGATGTCTCTAAAGTGTGCGCTGATGATTATAACTTCATGCCCATGGGAGCTACTCACTATTCAGAGGAGTATTTTAAACATTGCTTGGACCACATGAGGAACTACCCACAGGTTTACAGTATTCAAGAAATCACCAGTTTAACAGGGGGGAAATTTGTCCCCGACATTTCGCTCAACTTTGAGAAACGGCTGCTTGCAATGGGCACCATAGACATGGTAGAAAAACAAATGCTGccagaaaacacacaacttGCAATGGATTATGAGTCCATTTCAGCTGTGAATCCTCCAGTTAAAAAGGCCACTCGTTTCCACACAccTATCAGCAGTGACACAAATGCAGAGAAGCTCAGTGCTACATATGAGCCACATGTGTGTCTAGCGAAAGAGGCCTTCCTTCAGCTGCTGAACAACAGTGTTGGGTTTACTGAGGCATGGGAACTGCCGGtctgtgtgaaagcaaaccCTGCAAAAGGTAGCACTCAGAGTAAAACGGTGTACATCGACCCTCCTCTGCTGAAGACAGAGatgacatggagagagagaaatcaccTCTTTCTTGAGGAGAGTGTAAAACTGGCATACAAGAAGACAGGCTCAAACCCTGTGTTTTTCCTCACATCAGAGGACTACTGCAATAGGACTGACTTCGCCACAGCAGAGGCGAGCAGTAGACCAGTTGTTTCATTTGACAGCACTGATATAGATTTTGAAGCAGATTTGACCGACTTGGAGTCATTTGGGGAGTCTTGTCAACTGAAAAAGAAAGTCAAGGACAATGATTCGAAAAATCAAGCACCCTCTAAAAGTGAAACACTGGGATTATCAAAACCTAAAGTAGAATTAGATAAAGGCAAAACCTCACACAAATTACCTGAAGAAGCTTCCCCACCTAAAGACATTATATCAGCACTTTCTACACCAGCAAAGGAAGAAGCGCAAGATGAAACAGCCAGGGCGAGTGTAGAGGACAGCTCAGTGGATGAGAGTGCTGAGACTACTTTGAATTCTGTATCTGAAGAGGATCCTTTGAGCTCTACTGTAGAAGAGACCGCAGAATGTACACCAACCAAGCGACTAAGGCATTCCTCTGTAAACACAGATTCTGATGAGGAACGCCTCATTATTGATGACCCAAGCTCCCCACTGAGCAGCGTAGCAAGTAAGAAGAACCAGGTGACACCAGCAGCTCCGGAGAACTTCACTGACCCCAACACATCCTCTGTGAGTGAGCTGAATGTGCTCCTAAGTCCCAGCAGCTCTGCTAAAGGAGCTAAGAAAGGAGCCAAGAGACCCAGAGTCTCGGCGGATTGCGACCAGCTAGGGCACATTTTGCGAATGCAAAATGCCATGCTGAAATCCACGACGGCTAAAAGCCAAGAACCTCCAAAAGCACCAGCTGCAGACTGTCGTCCACCAGAACCAAAACCCAACCACCAAACTGTGTCTCTGGTCAAACCTAGTGTGTCCTCGTACCTGGACTTGGAACACAGAGAAGGGCTGCAGAATGAGCCTGCTGCTCCTGCCACCTCTCAGCCCACAGCACAAAGAAAAAGGCTGCTGAGAGAGGATCTGCTGGTGAGTGCCGAGGATGAGGAGGACTATGAAGCTCCTGAGGAGGGCAGTGTACTGTATAAACTCTACAGCCTGCTAGATGTGCTGCTGATGGTGCGCAGCACTGTGTCCATTGCTCATCCCAGACATGACCAAGAAACTTTCAGGGCGGTCCCTGTGCATGTGCTGCCCAAGCTGGAGTACCAGCTGTGTTACGGAGCCGAGTGTCTGACCCATGCTGAGGCCTGCCAACTGTGGGCTGAGCAGCAGCTTCACTCCAGCACGGTATCTTTCATAGgtcggATTAATGCACACACATCAAAGATTGTGCAGCTTCAAGAGCTCAAGCCTGACTGGATCCAGAGCACCTCCTGTGATTTCAAACCAGCTAGGTGCTTGAACACTCTCCACCACATACTGAAAAAAGTCATGAGCTTACAAGAGGGGAGATATCTGTTGGGTCACAAATCTGGCGAGGCTTTTTTAACCATATTCAAAGCTAGTGATGGAACAAAGCCCACTCGCAGTGTCTGTGACCTCCAGGCTGTCCACTGTGGACCTCCTGTAATCCCAGAGGCCAAAATCCCCTGGGTTCCAGTGGATCCCTTCGTTCTTATGCCGTTTCACAAGAAATACTGTAGACCTCCGTGCACCTTCCCTCCACGTCCACCCACACAGCCTAAGGCAGGAGGGTGTAAAGGAGCAAGGCTGGGTAACAGCATGACTGCATCTGCACAAGGGTGGCAAGGCTCAGCAGGGACGCCGAGTCAAAAGCGGaagaaaaagaatagaaaaaaaaaacaacagacaaataaaaacacatgtacAGAATGAAGAAGGCCA
>XM_034307591.1
aaaaaaaattctgctatGTTTTCATTGTGCAGTTTTGGGCCCAGATGAAAAAGCTGATGTGAAAAAAGACACAAAGGTAAATCCAGCTGCTCACGCCTCACAATCCAGTCGTGCCAAAAGTAACAAAACCACGCCACAGACCAACATCAAACATGGCCACGGAACTTCAGACTGCAGAGAAGCTCTTCCTGAATGTAAGAATAAAGTTGCTGAGACTATGGAAGAGATATGCTTCCCTACACCGAAAGTGCCCTACCCCTGCTTCTCCTCTCTCAGCCGCAAAGAAAGAGTGATGCATATATACTCCATTAAGAACAACAAGCAGGACAAAGCTCCACAGaatttaATAGAGAAGGTGAAGAAAGAGGTGGCAGAGTTTATGAAGTACCTGCAAGATGTCTCTAAAGTGTGCGCTGATGATTATAACTTCATGCCCATGGGAGCTACTCACTATTCAGAGGAGTATTTTAAACATTGCTTGGACCACATGAGGAACTACCCACAGGTTTACAGTATTCAAGAAATCACCAGTTTAACAGGGGGGAAATTTGTCCCCGACATTTCGCTCAACTTTGAGAAACGGCTGCTTGCAATGGGCACCATAGACATGGTAGAAAAACAAATGCTGccagaaaacacacaacttGCAATGGATTATGAGTCCATTTCAGCTGTGAATCCTCCAGTTAAAAAGGCCACTCGTTTCCACACAccTATCAGCAGTGACACAAATGCAGAGAAGCTCAGTGCTACATATGAGCCACATGTGTGTCTAGCGAAAGAGGCCTTCCTTCAGCTGCTGAACAACAGTGTTGGGTTTACTGAGGCATGGGAACTGCCGGtctgtgtgaaagcaaaccCTGCAAAAGGTAGCACTCAGAGTAAAACGGTGTACATCGACCCTCCTCTGCTGAAGACAGAGatgacatggagagagagaaatcaccTCTTTCTTGAGGAGAGTGTAAAACTGGCATACAAGAAGACAGGCTCAAACCCTGTGTTTTTCCTCACATCAGAGGACTACTGCAATAGGACTGACTTCGCCACAGCAGAGGCGAGCAGTAGACCAGTTGTTTCATTTGACAGCACTGATATAGATTTTGAAGCAGATTTGACCGACTTGGAGTCATTTGGGGAGTCTTGTCAACTGAAAAAGAAAGTCAAGGACAATGATTCGAAAAATCAAGCACCCTCTAAAAGTGAAACACTGGGATTATCAAAACCTAAAGTAGAATTAGATAAAGGCAAAACCTCACACAAATTACCTGAAGAAGCTTCCCCACCTAAAGACATTATATCAGCACTTTCTACACCAGCAAAGGAAGAAGCGCAAGATGAAACAGCCAGGGCGAGTGTAGAGGACAGCTCAGTGGATGAGAGTGCTGAGACTACTTTGAATTCTGTATCTGAAGAGGATCCTTTGAGCTCTACTGTAGAAGAGACCGCAGAATGTACACCAACCAAGCGACTAAGGCATTCCTCTGTAAACACAGATTCTGATGAGGAACGCCTCATTATTGATGACCCAAGCTCCCCACTGAGCAGCGTAGCAAGTAAGAAGAACCAGGTGACACCAGCAGCTCCGGAGAACTTCACTGACCCCAACACATCCTCTGTGAGTGAGCTGAATGTGCTCCTAAGTCCCAGCAGCTCTGCTAAAGGAGCTAAGAAAGGAGCCAAGAGACCCAGAGTCTCGGCGGATTGCGACCAGCTAGGGCACATTTTGCGAATGCAAAATGCCATGCTGAAATCCACGACGGCTAAAAGCCAAGAACCTCCAAAAGCACCAGCTGCAGACTGTCGTCCACCAGAACCAAAACCCAACCACCAAACTGTGTCTCTGGTCAAACCTAGTGTGTCCTCGTACCTGGACTTGGAACACAGAGAAGGGCTGCAGAATGAGCCTGCTGCTCCTGCCACCTCTCAGCCCACAGCACAAAGAAAAAGGCTGCTGAGAGAGGATCTGCTGGTGAGTGCCGAGGATGAGGAGGACTATGAAGCTCCTGAGGAGGGCAGTGTACTGTATAAACTCTACAGCCTGCTAGATGTGCTGCTGATGGTGCGCAGCACTGTGTCCATTGCTCATCCCAGACATGACCAAGAAACTTTCAGGGCGGTCCCTGTGCATGTGCTGCCCAAGCTGGAGTACCAGCTGTGTTACGGAGCCGAGTGTCTGACCCATGCTGAGGCCTGCCAACTGTGGGCTGAGCAGCAGCTTCACTCCAGCACGGTATCTTTCATAGgtcggATTAATGCACACACATCAAAGATTGTGCAGCTTCAAGAGCTCAAGCCTGACTGGATCCAGAGCACCTCCTGTGATTTCAAACCAGCTAGGTGCTTGAACACTCTCCACCACATACTGAAAAAAGTCATGAGCTTACAAGAGGGGAGATATCTGTTGGGTCACAAATCTGGCGAGGCTTTTTTAACCATATTCAAAGCTAGTGATGGAACAAAGCCCACTCGCAGTGTCTGTGACCTCCAGGCTGTCCACTGTGGACCTCCTGTAATCCCAGAGGCCAAAATCCCCTGGGTTCCAGTGGATCCCTTCGTTCTTATGCCGTTTCACAAGAAATACTGTAGACCTCCGTGCACCTTCCCTCCACGTCCACCCACACAGCCTAAGGCAGGAGGGTGTAAAGGAGCAAGGCTGGGTAACAGCATGACTGCATCTGCACAAGGGTGGCAAGGCTCAGCAGGGACGCCGAGTCAAAAGCGGaagaaaaagaatagaaaaaaaaaacaacagacaaataaaaacacatgtacAGAATGAAGAAGGCCA

Function

symbol description
ice2 Predicted to be involved in positive regulation of transcription by RNA polymerase III; snRNA transcription by RNA polymerase II; and snRNA transcription by RNA polymerase III. Predicted to be part of transcription elongation factor complex. Orthologous to human ICE2 (interactor of little elongation complex ELL subunit 2).

NR:

description
uncharacterized protein LOC110521127, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919801.2 True 3025 mRNA 0.47 15 16547325 16566002
XM_034307590.1 False 2811 mRNA 0.47 14 16547325 16562803
XM_034307591.1 False 2791 mRNA 0.48 14 16547325 16562788

Neighbor

gene id symbol gene type direction distance location
anxa2a anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175 coding downstream 1055 16540852 ~ 16546270 (-)
bnip2 bnip2 coding downstream 88930 16443455 ~ 16458395 (-)
otud7a otud7a,LOC108275340,LOC107715690,LOC107659507,LOC107752330,LOC107698115,LOC107550219,LOC107598848 coding downstream 184950 16325942 ~ 16362375 (-)
trpm1b LOC108274564,LOC108433637,LOC107585966,LOC107750517 coding downstream 279339 16265562 ~ 16267986 (-)
LOC113529693 LOC108274564,LOC108433637,LOC108441836,LOC107750517 coding downstream 284386 16256510 ~ 16262939 (-)
roraa rora,roraa,LOC108433630,LOC106561150,LOC107703215,LOC106573506 coding upstream 1293 16567295 ~ 16800368 (-)
LOC113530224 NA coding upstream 187174 16753176 ~ 16753281 (-)
c2cd4a LOC108275248,LOC108433606 coding upstream 322335 16888337 ~ 16890007 (-)
etfa etfa,LOC107712526,LOC107557988 coding upstream 547752 17113754 ~ 17128284 (-)
scaper scaper,LOC107662441,LOC107712524,LOC107688925,LOC106561156 coding upstream 574413 17140415 ~ 17234857 (-)
G149841 NA non-coding downstream 48864 16496171 ~ 16498461 (-)
G149836 NA non-coding downstream 86280 16460791 ~ 16461045 (-)
G149718 NA non-coding downstream 122721 16422666 ~ 16424604 (-)
G149632 klf13,znf746,LOC108274922,LOC107550220,LOC107598847,LOC107752329 non-coding downstream 229399 16309890 ~ 16317926 (-)
G149649 NA non-coding downstream 291839 16254647 ~ 16255486 (-)
G149854 NA non-coding upstream 46982 16612984 ~ 16614416 (-)
G150089 NA non-coding upstream 452954 17018956 ~ 17019183 (-)
G150036 NA non-coding upstream 462115 17028117 ~ 17052512 (-)
LOC117597939 NA non-coding upstream 509244 17075246 ~ 17078085 (-)
G150130 NA non-coding upstream 559412 17125414 ~ 17150481 (-)
acsbg1 acsbg1 other downstream 318991 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 555231 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 827750 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 1318340 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 1459265 15086113 ~ 15088060 (-)
LOC113529460 nrg4 other upstream 487351 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 1638649 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 1737140 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 1738636 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 1787972 18353974 ~ 18364036 (-)

Expression


Co-expression Network