slc15a5 (slc15a5,LOC107598876,LOC107575796)


Basic Information

Item Value
gene id slc15a5
gene name slc15a5,LOC107598876,LOC107575796
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18171931 ~ 18180647 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919805.2
GTTCAAATGAGGTGTTGACTTTGGACTTACACTGACCTACATGACTGGTAAACAATACTGCACAGACAGAGGGAATATACCAGTCCCTGAACAACACTTCCAAAGGAAAAGCTCCTGAAGCACTATGGTAGCGTTGAACGTCACTGGCCTTCATGATGGCCATCTGCTACAGAAGGTCTCTACCACTTGCCACCCAAATAGGAAAGTTATCCCACGTAAGCCTCGAAAGCCTCGAAAGAAAGTGAAGGCGATTATCTGTGTTCTATTTGTGGAGTTATTCGAGAGGTTCACTTTTCTTGGGATTGTGTGTAATATGATCCTCTTTTGCACCATCAAGTTGGGATATGACAATTACCAAGCAGCCACAGTAAACCTGTGTTTTGTGGGAGCCAGTACACTCACACCTGTTCTCGCCGGGTGGTTCGCAGAGACGTGTTTGGGAAGGAAAAAAGTTCTCTACCTTTGTACTCTACTTCATTTCTTTGGCACAGCACTGCTCCCGGTAGTTGCATTTCCATTTGAGGATTTCTACATCGACACACACAATATTATACATCACCTTGAGCCGCAGATACAACATATTCTCTTCTACACAGGGCTGCTGGCTGCTGCTTTTGGGATTGGGGGGATACGTGCTATCCTCTGCCCACTGGGAGTCAATAACCTTCAAGGTTATAATCAAAAGAAGATACTATCCTTTTTCAACTGGATCTACTGGTTAGTCAATCTGAATTCTACAGTCATCTTCCTGGGAATCGCCTATATTCAGCAGTCTGTGGGCAAAAACCTGGGCTTTCTCATTCCCTTCACTTCTGTTCTCTTGGGACTCATTGGCATAAATATGGCACGCAGCAATCTTATCCTACATCCCAAGAAAGGTAGTTCGTTGCTGACTACACTAGGTGTGTTTCTAAACTCCTTACAAATGTGTTGCCTCCGTTATCGTCATTTGAGTGGAGATGTGACAGACTGGCTTGATCGTGCCAAAGAGAACAATGGAGGATGTTACAGTGAGACCAAAGTAGAAAATGTTAAGATTCTGGTCAagctttttcctctttttggaCTGCAATTACTCTACCGGGCTTGTATAACCCAGATTCCATCAGGATACTATCTCCAGACGATGCATTCAAACCTCAACATTAATGGTGTCATGCTGCCAATAGCAGCTATGAATGTAATCAGTATTTTGCCGCTGCTAATTTTAGCACCGCTACTGGAGTTTGTCAGCACCTTATACCAGTATTTAAAGAAAACGCCTCCCTCCCCAGTCAAATTCATAATAATCGGGCATGCGTGTGCAGCTCTGTCTGCACTAATTGCAGGGATTTCAGAGATTCACAGAAAGGACTATCCTCAGATGGATCAGAGCCTCTCAGGAACAGTGCTTCAAGTGTCCTCAATGCCCTGCGTTCATCTTGCACCTCAGTACATCTTACTGGGTGTGGCAGAGGCCTTTGTCACACCAGCATGCTCTgttatctctttctgtctgactCCCAGCAACCTCAGAGGGATCTCCCTACACTTCCTTACCCTCTCCTATGGTGGAGGATGTTTTTTGGGTGCTCTTCTGATTCAGTTCTTTTACTTCGTGTCTGGTGGAAGCTTTTATCCAAATATATTAAACAATGGCAATATGGAGAGATTTTTTCTTACTGTAGCACTATTGATGGCCATAAACACCctgatattttggaaaatatctCACAGGTACACAGATCTGAGTGTTGAATTAAATACAAGAGTGAGACAAAGTCAGCTGGCTGAAAAGCTTCTACAGTATAAAGCCTGTCTCAGATATTATACAGTGGAACCTCACCATCTATAGAGCCTATTCTTTAACTTCTGCATGATggtcaattattattattgttttactgTACTACATGGCTTTGGCAAATTATTGCTGcattactttgtttttgttttttttccaaatcattGTGGCGCTGGCGTTACACATAGTATTTAATAGAACTATAATTATGTGCTTCAAAAGTGTTTTCCTCCTACATATATGACTCTAAG

Function

symbol description
slc15a5 Predicted to enable symporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC15A5 (solute carrier family 15 member 5).

NR:

description
PREDICTED: solute carrier family 15 member 5

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14639 SLC15A5; solute carrier family 15, member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919805.2 True 2034 mRNA 0.43 10 18171931 18180647

Neighbor

gene id symbol gene type direction distance location
aass aass,LOC107698474,LOC107752301,LOC106584550,LOC107753626 coding upstream 60487 18089100 ~ 18111444 (+)
fezf1 fezf1 coding upstream 85196 18082942 ~ 18086735 (+)
cadps2 cadps2 coding upstream 92309 17949291 ~ 18079622 (+)
slc13a1 slc13a1,LOC108274433 coding upstream 228976 17934290 ~ 17942955 (+)
iqub iqub coding upstream 240785 17921555 ~ 17931146 (+)
cnot2 cnot2,LOC108275083,LOC108436929,LOC107678985,LOC107696293,LOC107752336 coding downstream 33476 18214123 ~ 18227661 (+)
slc41a2a NA coding downstream 64923 18245570 ~ 18254770 (+)
si:ch211-106e7.2 NA coding downstream 96264 18276911 ~ 18296702 (+)
amn1 amn1 coding downstream 116947 18297594 ~ 18302925 (+)
LOC113529962 LOC108275334 coding downstream 125594 18306241 ~ 18317725 (+)
LOC117598020 NA non-coding upstream 32786 18130846 ~ 18139145 (+)
G150609 NA non-coding upstream 256689 17914625 ~ 17915242 (+)
G150592 NA non-coding upstream 259348 17911637 ~ 17912583 (+)
G150590 LOC108274445 non-coding upstream 331482 17832766 ~ 17840449 (+)
G150407 NA non-coding upstream 469173 17702554 ~ 17702758 (+)
G150873 LOC108275329,LOC102219286,LOC107096723,LOC103150244,LOC103466419,LOC103046663 non-coding downstream 161596 18342243 ~ 18345729 (+)
G150900 NA non-coding downstream 186235 18366882 ~ 18367108 (+)
G150933 NA non-coding downstream 242911 18423558 ~ 18424220 (+)
G150932 LOC108436944 non-coding downstream 244670 18425317 ~ 18444052 (+)
G150952 NA non-coding downstream 349492 18530139 ~ 18530708 (+)
G150589 LOC108274445 other upstream 329396 17834237 ~ 17842535 (+)
LOC113529564 ano9,LOC108442698 other upstream 2349340 15807990 ~ 15822591 (+)
svip svip other upstream 2446840 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 2519247 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 4342600 13790973 ~ 13829331 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 1907 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 494363 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 540948 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 567180 18747827 ~ 18796259 (+)
faap24 faap24 other downstream 940504 19121151 ~ 19125201 (+)

Expression


Co-expression Network