dbx2 (dbx2)


Basic Information

Item Value
gene id dbx2
gene name dbx2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19456749 ~ 19464228 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919870.2
caatcaggacaCAGCAACGCACACCCAAGAGCAAAAGAGGGAAAGGAgttattgttttctttctgctttttaatGAAGTTTACCCTGTCGGTCTTTCAGGAAAATGTTAGTAGTTGGGACAAACTTTGCGAAGAGCTCTGGATCCGACTCAGAAGGAGCAAATTCATGGTAAAGGGGGAAGTGGAGAGCAATGGCTGAATCTCCATCACGGCATCTTGGATTTGGCAATTCTGGGAAGAGTTTTCTTATTGATAATTTGCTTCGTCCTGACAATAAATCACCCCCCGCCCAGGTCATACCTGCTGCCAGCCAGAAAAGATACCTTTCTACTCTGGTGTGTGGGCCACTGGGACTGGCTCCTAAAAGTTCCTGGGTGGCTTCACATGCTCAGCCGAGTAACACTCCccaagagatggagagagagacactcaagACACGTTCAGTGTTGAGCGGTGTACTGCTGTGTGCTTCTCCTCTCGTTCACCCATGTTATGGTGGCTCCAGCCCACTGACGTGCTCTCCGCCTCTCCTCTGCAaaggGACAAGCCCTGCAGTATGGAGTTCAGGCCCATGCCCTAAACAACACAGAGGAATCCTGAGGAGAGCTGTGTTCTCTGAGCAGCAGAGGAGAGAACTTGAGAAAACGTTTCGCAGACAGAAATATATCAGCAAGACAGATCGCAACCGACTGGCCACAGAACTCTGTCTGAAGGAAACACAGGTAAAGATCTGGTTCCAAAACCGCAGAATGAAGTGGAGGAACTCGAAGGAGAGAGAAAGCCTGAGCTCAAGGCCACCCATGGAAGAGCTCCTGCTTAGGAGCATCCCAGAAAAAGGAGAAACAGGGCATACACAAACATTCCCCAGAGGAGGGCGCCACACATCGCAAACACCTGCTGGCAAGCCCTTGAAAGATCACACATCTGGCTGCTAACAATGTTCAAAGATAAGCCATGTACACttcagtcaaaagtttttgaacactTGGAGTTTGTTTAATTAGAGCGTCATTACTATTAGTACCACACAGAAAAAGGTACAGAACAAGAATTTAATAAggagaaaattaaaacaagtgTTCTACCAGAGATAtcgaaatcttttttttttttttaaggattatTAAGTCTCAGATCCTAATGGGAACCATAAGCAAATTAAGCCTACAGATACATACATGCTAGTATGACTGTAATAATAAGCTACAAGTACCTGATATTACTGATCAAGGTATAGATTGTTCCCATTAAAATAAATCCTCATTTTAGAGTGTTTATAAAGCCACCACTTTTTAAACTCTCAATGTCCCCAGacttatttttcagttattcatATAGAAAAGCAATCCATCATATTATTCAGCTTCCAATTATTCAGTAGCTAGAGTGATACTAACAGGAAAAGTATCTAGTTACGAGAGTGGACTGTAAGTCTGAACCCAAAAATTCTCAAATATAGGGTGTTCAGAAATGTTTGACGATCAGAATATATGCACCCATATACATCTTCCTCCCTTAATTTCCAGGAAGATACTTAATATTTGACTAATACTTCAGAAAGATTATACATGCATTAAAACATAACACTGAAATTTTGGaatttgtaaatatgtttttccaGAAGGTGCTCTGACAGCCAAAGCTGACCTGgtttctgttttcagttttttttttttgtcataaataTTGCCTGTTGTATATGACTGTATAAATTCATTGAATATTATTTGAAAACTAATTCAATATacttacaatgtttttttaactgagaaataaattgaatttttttgttattatttgtgaatagtaaaaatgttaatgtgctcactgtgctttgctacaaaacaaatgaattaatggCAGCATTTTGAATTTTGCATTTTGAATAAAACTCCTCCTGTAATCTCACATGtacataatgtttaataaa
>XM_034307522.1
caatcaggacaCAGCAACGCACACCCAAGAGCAAAAGAGGGAAAGGAgttattgttttctttctgctttttaatGAAGTTTACCCTGTCGGTCTTTCAGGAAAATGTTAGTAGTTGGGACAAACTTTGCGAAGAGCTCTGGATCCGACTCAGAAGGAGCAAATTCATGGTAAAGGGGGAAGTGGAGAGCAATGGCTGAATCTCCATCACGGCATCTTGGATTTGGCAATTCTGGGAAGAGTTTTCTTATTGATAATTTGCTTCGTCCTGACAATAAATCACCCCCCGCCCAGGTCATACCTGCTGCCAGCCAGAAAAGATACCTTTCTACTCTGGTGTGTGGGCCACTGGGACTGGCTCCTAAAAGTTCCTGGGTGGCTTCACATGCTCAGCCGAGTAACACTCCccaagagatggagagagagacactcaagACACGTTCAGCAGTGTTGAGCGGTGTACTGCTGTGTGCTTCTCCTCTCGTTCACCCATGTTATGGTGGCTCCAGCCCACTGACGTGCTCTCCGCCTCTCCTCTGCAaaggGACAAGCCCTGCAGTATGGAGTTCAGGCCCATGCCCTAAACAACACAGAGGAATCCTGAGGAGAGCTGTGTTCTCTGAGCAGCAGAGGAGAGAACTTGAGAAAACGTTTCGCAGACAGAAATATATCAGCAAGACAGATCGCAACCGACTGGCCACAGAACTCTGTCTGAAGGAAACACAGGTAAAGATCTGGTTCCAAAACCGCAGAATGAAGTGGAGGAACTCGAAGGAGAGAGAAAGCCTGAGCTCAAGGCCACCCATGGAAGAGCTCCTGCTTAGGAGCATCCCAGAAAAAGGAGAAACAGGGCATACACAAACATTCCCCAGAGGAGGGCGCCACACATCGCAAACACCTGCTGGCAAGCCCTTGAAAGATCACACATCTGGCTGCTAACAATGTTCAAAGATAAGCCATGTACACttcagtcaaaagtttttgaacactTGGAGTTTGTTTAATTAGAGCGTCATTACTATTAGTACCACACAGAAAAAGGTACAGAACAAGAATTTAATAAggagaaaattaaaacaagtgTTCTACCAGAGATAtcgaaatcttttttttttttttaaggattatTAAGTCTCAGATCCTAATGGGAACCATAAGCAAATTAAGCCTACAGATACATACATGCTAGTATGACTGTAATAATAAGCTACAAGTACCTGATATTACTGATCAAGGTATAGATTGTTCCCATTAAAATAAATCCTCATTTTAGAGTGTTTATAAAGCCACCACTTTTTAAACTCTCAATGTCCCCAGacttatttttcagttattcatATAGAAAAGCAATCCATCATATTATTCAGCTTCCAATTATTCAGTAGCTAGAGTGATACTAACAGGAAAAGTATCTAGTTACGAGAGTGGACTGTAAGTCTGAACCCAAAAATTCTCAAATATAGGGTGTTCAGAAATGTTTGACGATCAGAATATATGCACCCATATACATCTTCCTCCCTTAATTTCCAGGAAGATACTTAATATTTGACTAATACTTCAGAAAGATTATACATGCATTAAAACATAACACTGAAATTTTGGaatttgtaaatatgtttttccaGAAGGTGCTCTGACAGCCAAAGCTGACCTGgtttctgttttcagttttttttttttgtcataaataTTGCCTGTTGTATATGACTGTATAAATTCATTGAATATTATTTGAAAACTAATTCAATATacttacaatgtttttttaactgagaaataaattgaatttttttgttattatttgtgaatagtaaaaatgttaatgtgctcactgtgctttgctacaaaacaaatgaattaatggCAGCATTTTGAATTTTGCATTTTGAATAAAACTCCTCCTGTAATCTCACATGtacataatgtttaataaa

Function

symbol description
dbx2 Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within swimming behavior. Predicted to be located in nucleus. Is expressed in spinal cord; spinal cord neural tube; and tegmentum. Orthologous to human DBX2 (developing brain homeobox 2).

NR:

description
PREDICTED: homeobox protein DBX2

GO: NA

KEGG:

id description
K24875 DBX; homeobox protein DBX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919870.2 False 1929 mRNA 0.40 4 19456749 19464228
XM_034307522.1 True 1932 mRNA 0.40 4 19456749 19464228

Neighbor

gene id symbol gene type direction distance location
szl LOC108274651,LOC108428364 coding upstream 4916 19449543 ~ 19451833 (+)
mov10l1 mov10l1 coding upstream 10402 19431426 ~ 19446347 (+)
chid1 chid1,LOC107674841 coding upstream 164639 19285785 ~ 19292110 (+)
thoc5 thoc5 coding upstream 176167 19269694 ~ 19280582 (+)
LOC113530162 LOC108274540,LOC103046250,LOC108428357 coding upstream 216111 19237672 ~ 19240638 (+)
nell2a nell2,LOC108428412,LOC107661281,LOC100380741 coding downstream 11290 19475518 ~ 19542669 (+)
LOC113529538 LOC108275145 coding downstream 128273 19592501 ~ 19595962 (+)
twf1a twf1,twf1a,LOC108428409,LOC107695005,LOC107710864 coding downstream 148984 19613212 ~ 19621631 (+)
prickle1a prickle1,LOC107695002,LOC107741965,LOC107564734 coding downstream 343025 19807253 ~ 19830667 (+)
yaf2 yaf2,LOC108428404,LOC108439407,LOC105018284 coding downstream 396971 19861199 ~ 19868218 (+)
G151457 NA non-coding upstream 32591 19423440 ~ 19424158 (+)
G151450 NA non-coding upstream 43297 19413235 ~ 19413452 (+)
G151448 NA non-coding upstream 44716 19411601 ~ 19412033 (+)
G151446 NA non-coding upstream 49423 19406606 ~ 19407326 (+)
G151447 NA non-coding upstream 52351 19403972 ~ 19404398 (+)
LOC117597885 NA non-coding downstream 146510 19610738 ~ 19612230 (+)
G151662 NA non-coding downstream 148426 19612654 ~ 19612937 (+)
G151683 NA non-coding downstream 265509 19729737 ~ 19782913 (+)
G151694 NA non-coding downstream 345569 19809797 ~ 19815626 (+)
G151826 NA non-coding downstream 513743 19977971 ~ 19978197 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other upstream 71845 19323331 ~ 19384904 (+)
G151401 NA other upstream 192856 19260624 ~ 19263893 (+)
faap24 faap24 other upstream 331548 19121151 ~ 19125201 (+)
nfat5a LOC108274760,LOC108428435 other upstream 660490 18747827 ~ 18796259 (+)
urahb LOC108274538 other upstream 732063 18721595 ~ 18724686 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other downstream 197615 19661843 ~ 19748080 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other downstream 2588386 22052614 ~ 22058158 (+)
arpp19b arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970 other downstream 2612621 22076849 ~ 22078496 (+)
G153014 zmp:0000001167,LOC108274702,LOC107754369,LOC107551438,LOC107561184,LOC107655150 other downstream 2752047 22216275 ~ 22266382 (+)
syt7a syt7,LOC108432693,LOC107655153,LOC107754343,LOC107551433 other downstream 2866535 22330763 ~ 22446147 (+)

Expression


Co-expression Network