sigirr (sigirr)


Basic Information

Item Value
gene id sigirr
gene name sigirr
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15832179 ~ 15841507 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919874.2
tttttcagcttcactGCGCAACCTGTGCGCTCCTCGTCTCTTGGTGTCAGTTGTTATTTGCCATTAAATTAGCGCTTCAGTCGTCGGATATCTGTATCCTCCTGTTTCACACACTGGACTCAGCTGCGACTGAGCAGGAGGCTGTGGCTGTCTTCTGCAGGTGTAAGAGCACGATGGGACACACACTCTTCATGTGTTTAATATGGATCCAGGTTGCACTCATGATTGGAGAGCCACTTTGTAGCAGAACCGTGCAATTTGTGCCCAGCAGCGCTGAGACTGATGTGTGGGCAAGCCAAGGCTCCAATGTTGAACTGAACTGCACAGTTCTGATACACTACAGCAACAACAGTGAGTCTGAATGTAAGGCCCATCTGCGTTGGAGCAAAGATGGAGAACCTCTCCGCAGCCCTGGTTCCTTCACCAAGAACACCTCCCAGTGGTTCACAGACGAAGACCAGCTGATGGTGAGCAGTGTTCTGACTGTGAGTCTGAAGGAAGAGTCAGATTATGGTCTCTACTCATGTGAAATATGGAACAGTACAACCATCTTCAGGCTTAAAAACACCATCTTCCCCAGTCACACAGGGGCAGTGATCGCATCCCTGGTTTTGTTCGTAATGTTGTTCTTGGCTGTTCTAGTGTATTCAAAATGCCACCTCAACTTCAAACTCTGGTATAAAAACTCATATGGAGATTATGAAATCAGTGATGGCAAAATTTATGATGCCTACATTTCATACATAAACGATGAGAATGACCAGAAGTTTGTAAATTTTATTCTGAAACCTCAACTGGAGAATAAGTATGGGCACAAGTTACTCCTTAACAACACAAACATCCTCCCTGGAGCAGAGCCATCTGCAGAGTTGATTATGAACATCAGTCGCTGCCGGCGGCTCATCGTCGTGCTGTCACAGGCCTATGTACAGCAGGAGTGGTGCACTACCAACTTCAGACAGGGCTTATTTCACCTGCTGGAGCTGTCTCGGAAGCCCATCTTCATCGTCTTTCAGTCTCAGCAGAAGCATGTGAGTGTGGACATCATCCAGCAGCTACGAGATCACCAGGCACGCATCACGACTCTCATCTGGGGAGCACATTCCATTaccccatcatcatcattttggAAGGCACTAGCTTTGGCCATGCCCCGTAAAGTGGTGTTCCAGAGTGAGTTGCCTGGAGACCCTCAGACTCTGCTCGAGGGGGATAGGGACCCCATGCTCACCATGCAGCCAGACTATCTGGATTGCAGACCTGATCCAGACCCTGAAGGAGATCTGGGCATACGGTTCCCCATCTATAAAGCAATGTCCAGGGACCAAGTTCTCCCTCCAGCTTCTGATCCAGTGACTGAAGCCAAAACCCCTGAGATTGATGTGTCTGACCTGGGCTCCAGGAGCTACGCTGCCCGAAGAGATTTTTACTGTCTGGTTACTGATGACATTTGAACCTGGAGCACTACACCTTGTTCCTCTTTCACTCCAATGAGTACAGAGCAAAACAGAAGCTCTAGCCTATTTCAGTGGTCACTCTTTGTTTGTGTTTCAAAAAATTTCTGTGTTTTAGGAAACTAGATTTGACCAGATTAGAGGAGCACAAGTCATTTACAAGGGCTTGAGTTTAGGTAAACTCAGCACACAACATCCAAGCCACTACCCTTTAATctgagatttttaatttttctatataaaaagtcctatatttaaaattatgtttgCTAGCCGGTTAGGCTGTTAGTTCTGAGAGGTTATGCCTTTAGATCAAGTAAAGTAAAAATTCTGtataaattttttcttttcttttgccttTCCCTTTCTTGTACTTTCAGCACACAAGTTACTGCAAAAGCATTGAAGTGCATCATATTGCTAACATTTCGTATTAGTTGATGTATATAgcttttatatttgtatatacttCAATTCAGTGTTtccaaataaattcattttgtgGGCCATTTGTTGTGAAAGGG

Function

symbol description
sigirr Acts upstream of or within negative regulation of inflammatory response. Located in cell surface. Is expressed in brain; gill; integument; liver; and pleuroperitoneal region. Orthologous to human SIGIRR (single Ig and TIR domain containing).

NR:

description
single Ig IL-1-related receptor

GO: NA

KEGG:

id description
K05169 SIGIRR; single Ig IL-1R-related molecule

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919874.2 True 1978 mRNA 0.45 9 15832179 15841507

Neighbor

gene id symbol gene type direction distance location
fancf fancf coding upstream 79653 15751139 ~ 15752526 (+)
si:ch211-87j1.4 LOC108274534,LOC103040017,LOC108442681,LOC105913127,LOC107701590,LOC107695923,LOC107555711,LOC107723960,LOC107752489,LOC107571669 coding upstream 197189 15631055 ~ 15634990 (+)
clpxb clpx,LOC108275190,LOC105913134,LOC108442679 coding upstream 211760 15609440 ~ 15620419 (+)
lrrk2 lrrk2 coding upstream 226442 15577183 ~ 15605737 (+)
mphosph6 mphosph6 coding upstream 383438 15446796 ~ 15448741 (+)
hexa hexa coding downstream 33356 15874863 ~ 15882172 (+)
nr2e3 nr2e3,LOC105892475,LOC107595245,LOC107589312 coding downstream 46600 15888107 ~ 15890739 (+)
stoml1 stoml1 coding downstream 50146 15891653 ~ 15895454 (+)
LOC113530122 cyp11a,LOC108442685,LOC106561846 coding downstream 56169 15897676 ~ 15905329 (+)
stra6 stra6 coding downstream 127036 15968543 ~ 15980245 (+)
G149276 NA non-coding upstream 13811 15771838 ~ 15818368 (+)
G149268 NA non-coding upstream 77267 15754665 ~ 15754912 (+)
G149248 NA non-coding upstream 120262 15711013 ~ 15711917 (+)
G149131 NA non-coding upstream 262692 15567836 ~ 15569487 (+)
G149091 cpne8,LOC108274474 non-coding upstream 348276 15483074 ~ 15483903 (+)
G149427 NA non-coding downstream 183337 16024844 ~ 16026512 (+)
G149428 NA non-coding downstream 186100 16027607 ~ 16028019 (+)
G149552 NA non-coding downstream 413177 16254684 ~ 16255314 (+)
G149574 NA non-coding downstream 486749 16328256 ~ 16328539 (+)
LOC117597940 NA non-coding downstream 497083 16338590 ~ 16341963 (+)
LOC113529564 ano9,LOC108442698 other upstream 9588 15807990 ~ 15822591 (+)
svip svip other upstream 107088 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 179495 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2002848 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2055308 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1992730 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2341047 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2833503 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2880088 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2906320 18747827 ~ 18796259 (+)

Expression


Co-expression Network